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MASK4 Test Report

Forbush, Dominic; Coe, Ryan G.; Donnelly, Timothy J.; Bacelli, Giorgio; Gallegos-Patterson, Damian; Spinneken, Johannes; Lee, Jantzen; Crandell, Robert; Dullea, Kevin

Wave energy converters (WECs) are designed to produce useful work from ocean waves. This useful work can take the form of electrical power or even pressurized water for, e.g., desalination. This report details the findings from a wave tank test focused on that production of useful work. To that end, the experimental system and test were specifically designed to validate models for power transmission throughout the WEC system. Additionally, the validity of co-design informed changes to the power take-off (PTO) were assessed and shown to provide the expected improvements in system performance.

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Assessing Uncertainty in Modeling Stress Corrosion Cracking

Mendoza, Hector; Gilkey, Lindsay N.; Brooks, Dusty M.

This report summarizes the collaboration between Sandia National Laboratories (SNL) and the Nuclear Regulatory Commission (NRC) to improve the state of knowledge on chloride induced stress corrosion cracking (CISCC). The foundation of this work relied on using SNL’s CISCC computer code to assess the current state of knowledge for probabilistically modeling CISCC on stainless steel canisters. This work is presented as three tasks. The first task is exploring and independently comparing crack growth rate (CGR) models typically used in CISCC modeling by the research community. The second task is implementing two of the more conservative CGR models from the first task into SNL’s full CISCC code to understand the impact of the different CGR models on a full probabilistic analysis while studying uncertainty from three key input parameters. The combined work of the first two tasks showed that properly measuring salt deposition rates is impactful to reducing uncertainty when modeling CISCC. The work in Task 2 also showed how probabilistic CGR models can be more appropriate at capturing aleatory uncertainty when modeling SCC. Lastly, appropriate and realistic input parameters relevant for CISCC modeling were documented in the last task as a product of the simulations considered in the first two tasks.

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Predicting EBW detonator failure using DSC data

Journal of Thermal Analysis and Calorimetry

Hobbs, Michael L.

Exploding bridgewire detonators (EBWs) containing pentaerythritol tetranitrate (PETN) exposed to high temperatures may not function following discharge of the design electrical firing signal from a charged capacitor. Knowing functionality of these arbitrarily facing EBWs is crucial when making safety assessments of detonators in accidental fires. Orientation effects are only significant when the PETN is partially melted. Here, the melting temperature can be measured with a differential scanning calorimeter. Nonmelting EBWs will be fully functional provided the detonator never exceeds 406 K (133 °C) for at least 1 h. Conversely, EBWs will not be functional once the average input pellet temperature exceeds 414 K (141 °C) for a least 1 min which is long enough to cause the PETN input pellet to completely melt. Functionality of the EBWs at temperatures between 406 and 414 K will depend on orientation and can be predicted using a stratification model for downward facing detonators but is more complex for arbitrary orientations. A conservative rule of thumb would be to assume that the EBWs are fully functional unless the PETN input pellet has completely melted.

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Accurate equation of state of H2He binary mixtures up to 5.4 GPa

Physical Review. B

Clay III, Raymond C.; Duwal, Sakun; Seagle, Christopher T.; Zoller, Charlie M.; Hemley, Russell J.; Ryu, Young J.; Tkachev, Sergey; Prakapenka, Vitali; Ahart, Muhtar

Brillouin scattering spectroscopy has been used to obtain an accurate (<1%) ρ-P equation of state (EOS) of 1:1 and 9:1 H2-He molar mixtures from 0.5 to 5.4 GPa at 296 K. Our calculated equations of state indicate close agreement with the experimental data right to the freezing pressure of hydrogen at 5.4 GPa. The measured velocities agree on average, within 0.5%, of an ideal mixing model. The ρ-P EOSs presented have a standard deviation of under 0.3% from the measured densities and under 1% deviation from ideal mixing. Furthermore, a detailed discussion of the accuracy, precision, and sources of error in the measurement and analyses of our equations of state is presented.

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Large Destabilization of (TiVNb)-Based Hydrides via (Al, Mo) Addition: Insights from Experiments and Data-Driven Models

ACS Applied Energy Materials

Pineda Romero, Nayely; Witman, Matthew D.; Harvey, Kim; Stavila, Vitalie; Nassif, Vivian; Elkaim, Erik; Zlotea, Claudia

High-entropy alloys (HEAs) represent an interesting alloying strategy that can yield exceptional performance properties needed across a variety of technology applications, including hydrogen storage. Examples include ultrahigh volumetric capacity materials (BCC alloys → FCC dihydrides) with improved thermodynamics relative to conventional high-capacity metal hydrides (like MgH2), but still further destabilization is needed to reduce operating temperature and increase system-level capacity. In this work, we demonstrate efficient hydride destabilization strategies by synthesizing two new Al0.05(TiVNb)0.95-xMox (x = 0.05, 0.10) compositions. We specifically evaluate the effect of molybdenum (Mo) addition on the phase structure, microstructure, hydrogen absorption, and desorption properties. Both alloys crystallize in a bcc structure with decreasing lattice parameters as the Mo content increases. The alloys can rapidly absorb hydrogen at 25 °C with capacities of 1.78 H/M (2.79 wt %) and 1.79 H/M (2.75 wt %) with increasing Mo content. Pressure-composition isotherms suggest a two-step reaction for hydrogen absorption to a final fcc dihydride phase. The experiments demonstrate that increasing Mo content results in a significant hydride destabilization, which is consistent with predictions from a gradient boosting tree data-driven model for metal hydride thermodynamics. Furthermore, improved desorption properties with increasing Mo content and reversibility were observed by in situ synchrotron X-ray diffraction, in situ neutron diffraction, and thermal desorption spectroscopy.

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Applying Sensor-Based Phase Identification With AMI Voltage in Distribution Systems

IEEE Access

Blakely, Logan; Reno, Matthew J.; Azzolini, Joseph A.; Jones, Christian B.; Nordy, David

Accurate distribution system models are becoming increasingly critical for grid modernization tasks, and inaccurate phase labels are one type of modeling error that can have broad impacts on analyses using the distribution system models. This work demonstrates a phase identification methodology that leverages advanced metering infrastructure (AMI) data and additional data streams from sensors (relays in this case) placed throughout the medium-voltage sector of distribution system feeders. Intuitive confidence metrics are employed to increase the credibility of the algorithm predictions and reduce the incidence of false-positive predictions. The method is first demonstrated on a synthetic dataset under known conditions for robustness testing with measurement noise, meter bias, and missing data. Then, four utility feeders are tested, and the algorithm’s predictions are proven to be accurate through field validation by the utility. Lastly, the ability of the method to increase the accuracy of simulated voltages using the corrected model compared to actual measured voltages is demonstrated through quasi-static time-series (QSTS) simulations. The proposed methodology is a good candidate for widespread implementation because it is accurate on both the synthetic and utility test cases and is robust to measurement noise and other issues.

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CO2 adsorption mechanisms at the ZIF-8 interface in a Type 3 porous liquid

Journal of Molecular Liquids

Rimsza, Jessica; Hurlock, Matthew; Nenoff, Tina M.; Christian, Matthew S.

Porous liquids (PLs) are an attractive material for gas separation and carbon sequestration due to their permanent internal porosity and high adsorption capacity. PLs that contain zeolitic imidazole frameworks (ZIFs), such as ZIF-8, form PLs through exclusion of aqueous solvents from the framework pore due to its hydrophobicity. The gas adsorption sites in ZIF-8 based PLs are historically unknown; gas molecules could be captured in the ZIF-8 pore or adsorb at the ZIF-8 interface. To address this question, ab initio molecular dynamics was used to predict CO2 binding sites in a PL composed of a ZIF-8 particle solvated in a water, ethylene glycol, and 2-methylimidazole solvent system. Further, the results show that CO2 energetically prefers to reside inside the ZIF-8 pore aperture due to strong van der Waals interactions with the terminal imidazoles. However, the CO2 binding site can be blocked by larger solvent molecules that have greater adsorption interactions. CO2 molecules were unable to diffuse into the ZIF-8 pore, with CO2 adsorption occurring due to binding with the ZIF-8 surface. Therefore, future design of ZIF-based PLs for enhanced CO2 adsorption should be based on the strength of gas binding at the solvated particle surface.

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Performance assessment for climate intervention (PACI): preliminary application to a stratospheric aerosol injection scenario

Frontiers in Environmental Science

Wheeler, Lauren B.; Zeitler, Todd Z.; Brunell, Sarah B.; Lien, Jessica; Shand, Lyndsay; Wagman, Benjamin M.; Roesler, Erika L.; Martinez, Carianne; Potter, Kevin M.

As the prospect of exceeding global temperature targets set forth in the Paris Agreement becomes more likely, methods of climate intervention are increasingly being explored. With this increased interest there is a need for an assessment process to understand the range of impacts across different scenarios against a set of performance goals in order to support policy decisions. The methodology and tools developed for Performance Assessment (PA) for nuclear waste repositories shares many similarities with the needs and requirements for a framework for climate intervention. Using PA, we outline and test an evaluation framework for climate intervention, called Performance Assessment for Climate Intervention (PACI) with a focus on Stratospheric Aerosol Injection (SAI). We define a set of key technical components for the example PACI framework which include identifying performance goals, the extent of the system, and identifying which features, events, and processes are relevant and impactful to calculating model output for the system given the performance goals. Having identified a set of performance goals, the performance of the system, including uncertainty, can then be evaluated against these goals. Using the Geoengineering Large Ensemble (GLENS) scenario, we develop a set of performance goals for monthly temperature, precipitation, drought index, soil water, solar flux, and surface runoff. The assessment assumes that targets may be framed in the context of risk-risk via a risk ratio, or the ratio of the risk of exceeding the performance goal for the SAI scenario against the risk of exceeding the performance goal for the emissions scenario. From regional responses, across multiple climate variables, it is then possible to assess which pathway carries lower risk relative to the goals. The assessment is not comprehensive but rather a demonstration of the evaluation of an SAI scenario. Future work is needed to develop a more complete assessment that would provide additional simulations to cover parametric and aleatory uncertainty and enable a deeper understanding of impacts, informed scenario selection, and allow further refinements to the approach.

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pvlib python: 2023 project update

Journal of Open Source Software

Anderson, Kevin S.; Hansen, Clifford; Holmgren, William F.; Mikofski, Mark A.; Jensen, Adam R.; Driesse, Anton

pvlib python is a community-developed, open-source software toolbox for simulating the performance of solar photovoltaic (PV) energy components and systems. It provides reference implementations of over 100 empirical and physics-based models from the peer-reviewed scientific literature, including solar position algorithms, irradiance models, thermal models, and PV electrical models. In addition to individual low-level model implementations, pvlib python provides high-level workflows that chain these models together like building blocks to form complete “weather-to-power” photovoltaic system models. It also provides functions to fetch and import a wide variety of weather datasets useful for PV modeling. pvlib python has been developed since 2013 and follows modern best practices for open-source python software, with comprehensive automated testing, standards-based packaging, and semantic versioning. Its source code is developed openly on GitHub and releases are distributed via the Python Package Index (PyPI) and the conda-forge repository. pvlib python’s source code is made freely available under the permissive BSD-3 license. Here we (the project’s core developers) present an update on pvlib python, describing capability and community development since our 2018 publication (Holmgren, Hansen, & Mikofski, 2018).

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Quantifying uncertainty in analysis of shockless dynamic compression experiments on platinum. I. Inverse Lagrangian analysis

Journal of Applied Physics

Davis, Jean-Paul; Brown, Justin L.

Absolute measurements of solid-material compressibility by magnetically driven shockless dynamic compression experiments to multi-megabar pressures have the potential to greatly improve the accuracy and precision of pressure calibration standards for use in diamond anvil cell experiments. To this end, we apply characteristics-based inverse Lagrangian analysis (ILA) to 11 sets of ramp-compression data on pure platinum (Pt) metal and then reduce the resulting weighted-mean stress-strain curve to the principal isentrope and room-temperature isotherm using simple models for yield stress and Grüneisen parameter. We introduce several improvements to methods for ILA and quasi-isentrope reduction, the latter including calculation of corrections in wave speed instead of stress and pressure to render results largely independent of initial yield stress while enforcing thermodynamic consistency near zero pressure. More importantly, we quantify in detail the propagation of experimental uncertainty through ILA and model uncertainty through quasi-isentrope reduction, considering all potential sources of error except the electrode and window material models used in ILA. Compared to previous approaches, we find larger uncertainty in longitudinal stress. Monte Carlo analysis demonstrates that uncertainty in the yield-stress model constitutes by far the largest contribution to uncertainty in quasi-isentrope reduction corrections. We present a new room-temperature isotherm for Pt up to 444 GPa, with 1-sigma uncertainty at that pressure of just under ± 1.2 % ; the latter is about a factor of three smaller than uncertainty previously reported for multi-megabar ramp-compression experiments on Pt. The result is well represented by a Vinet-form compression curve with (isothermal) bulk modulus K 0 = 270.3 ± 3.8 GPa, pressure derivative K 0 ′ = 5.66 ± 0.10 , and correlation coefficient R K 0 , K 0 ′ = − 0.843 .

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Quantifying uncertainty in analysis of shockless dynamic compression experiments on platinum. II. Bayesian model calibration

Journal of Applied Physics

Brown, Justin L.; Davis, Jean-Paul; Tucker, J.D.; Huerta, Jose G.; Shuler, Kurtis

Dynamic shockless compression experiments provide the ability to explore material behavior at extreme pressures but relatively low temperatures. Typically, the data from these types of experiments are interpreted through an analytic method called Lagrangian analysis. In this work, alternative analysis methods are explored using modern statistical methods. Specifically, Bayesian model calibration is applied to a new set of platinum data shocklessly compressed to 570 GPa. Several platinum equation-of-state models are evaluated, including traditional parametric forms as well as a novel non-parametric model concept. The results are compared to those in Paper I obtained by inverse Lagrangian analysis. The comparisons suggest that Bayesian calibration is not only a viable framework for precise quantification of the compression path, but also reveals insights pertaining to trade-offs surrounding model form selection, sensitivities of the relevant experimental uncertainties, and assumptions and limitations within Lagrangian analysis. The non-parametric model method, in particular, is found to give precise unbiased results and is expected to be useful over a wide range of applications. The calibration results in estimates of the platinum principal isentrope over the full range of experimental pressures to a standard error of 1.6%, which extends the results from Paper I while maintaining the high precision required for the platinum pressure standard.

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Passive and active neutron signatures of 233U for nondestructive assay

Physical Review Applied

Searfus, O.; Marleau, P.; Uribe, Eva U.; Reedy, Heather A.; Jovanovic, Igor

The thorium fuel cycle is emerging as an attractive alternative to conventional nuclear fuel cycles, as it does not require the enrichment of uranium for long-term sustainability. The operating principle of this fuel cycle is the irradiation of 232Th to produce 233U, which is fissile and sustains the fission chain reaction. 233U poses unique challenges for nuclear safeguards, as it is associated with a uniquely extreme γ-ray environment from 232U contamination, which limits the feasibility of the γ-ray-based assay, as well as more conservative accountability requirements than for 235U set by the International Atomic Energy Agency. Consequently, instrumentation used for safeguarding 235U in traditional fuel cycles may be inapplicable. It is essential that the nondestructive signatures of 233U be characterized so that nuclear safeguards can be applied to thorium fuel-cycle facilities as they come online. In this work, a set of 233U3O8 plates, containing 984 g233U, was measured at the National Criticality Experiments Research Center. A high-pressure 4He gaseous scintillation detector, which is insensitive to γ-rays, was used to perform a passive fast neutron spectral signature measurement of 233U3O8, and was used in conjunction with a pulsed deuterium-tritium neutron generator to demonstrate the differential die-away signature of this material. Furthermore, an array of 3He detectors was used in conjunction with the same neutron generator to measure the delayed neutron time profile of 233U, which is unique to this nuclide. These measurements provide a benchmark for future nondestructive assay instrumentation development, and demonstrate a set of key neutron signatures to be leveraged for nuclear safeguards in the thorium fuel cycle.

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The Roadrunner Trap: A QSCOUT Device

Revelle, Melissa C.; Delaney, Matthew A.; Haltli, Raymond A.; Heller, Edwin J.; Nordquist, Christopher D.; Ou, Eric; Van Der Wall, Jay W.; Clark, Susan M.

The Roadrunner ion trap is a micro-fabricated surface-electrode ion trap based on silicon technology. This trap has one long linear section and a junction to allow for chain storage and reconfiguration. It uses a symmetric rf-rail design with segmented inner and outer control electrodes and independent control in the junction arms. The trap is fabricated on Sandia’s High Optical Access (HOA) platform to provide good optical access for tightly focused laser beams skimming the trap surface. It is packaged on our custom Bowtie-102 ceramic pin or land grid array packages using a 2.54 mm pitch for backside pins or pads. This trap also includes an rf sensing capacitive divider and tungsten wires for heating or temperature monitoring. The Roadrunner builds on the knowledge gained from previous surface traps fabricated at Sandia while improving ion control capabilities.

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Uncovering anisotropic effects of electric high-moment dipoles on the tunneling current in $\delta$-layer tunnel junctions

Scientific Reports

Mendez Granado, Juan P.; Mamaluy, Denis

The precise positioning of dopants in semiconductors using scanning tunneling microscopes has led to the development of planar dopant-based devices, also known as δ layer-based devices, facilitating the exploration of new concepts in classical and quantum computing. Recently, it has been shown that two distinct conductivity regimes (low- and high-bias regimes) exist in δ-layer tunnel junctions due to the presence of quasi-discrete and continuous states in the conduction band of δ-layer systems. Furthermore, discrete charged impurities in the tunnel junction region significantly influence the tunneling rates in δ-layer tunnel junctions. Here we demonstrate that electrical dipoles, i.e. zero-charge defects, present in the tunnel junction region can also significantly alter the tunneling rate, depending, however, on the specific conductivity regime, and orientation and moment of the dipole. In the low-bias regime, with high-resistance tunneling mode, dipoles of nearly all orientations and moments can alter the current, indicating the extreme sensitivity of the tunneling current to the slightest imperfection in the tunnel gap. In the high-bias regime, with low-resistivity, only dipoles with high moments and oriented in the directions perpendicular to the electron tunneling direction can significantly affect the current, thus making this conductivity regime significantly less prone to the influence of dipole defects with low-moments or oriented in the direction parallel to the tunneling.

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Pressure-based process monitoring of direct-ink write material extrusion additive manufacturing

Additive Manufacturing

Kopatz, Jessica W.; Reinholtz, William D.; Cook, Adam; Tappan, Alexander S.; Grillet, Anne M.

As additive manufacturing (AM) has become a reliable method for creating complex and unique hardware rapidly, the quality assurance of printed parts remains a priority. In situ process monitoring offers an approach for performing quality control while simultaneously minimizing post-production inspection. For extrusion printing processes, direct linkages between extrusion pressure fluctuations and print defects can be established by integrating pressure sensors onto the print head. In this work, the sensitivity of process monitoring is tested using engineered spherical defects. Pressure and force sensors located near an ink reservoir and just before the nozzle are shown to assist in identification of air bubbles, changes in height between the print head and build surface, clogs, and particle aggregates with a detection threshold of 60–70% of the nozzle diameter. Visual evidence of printed bead distortion is quantified using optical image analysis and correlated to pressure measurements. Importantly, this methodology provides an ability to monitor the quality of AM parts produced by extrusion printing methods and can be accomplished using commonly available pressure-sensing equipment.

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Real time lithium metal calendar aging in common battery electrolytes

Frontiers in Batteries and Electrochemistry

Merrill, Laura C.; Long, Daniel M.; Rosenberg, Samantha G.; Foulk, James W.; Lam, Nhu; Harrison, Katharine L.

Li metal anodes are highly sought after for high energy density applications in both primary commercial batteries and next-generation rechargeable batteries. In this research, Li metal electrodes are aged in coin cells for a year with electrolytes relevant to both types of batteries. The aging response is monitored via electrochemical impedance spectroscopy, and Li electrodes are characterized post-mortem. It was found that the carbonate-based electrolytes exhibit the most severe aging effects, despite the use of LiBF4-based carbonate electrolytes in Li/CFx Li primary batteries. Highly concentrated LiFSI electrolytes exhibit the most minimal aging effects, with only a small impedance increase with time. This is likely due to the concentrated nature of the electrolyte causing fewer solvent molecules available to react with the electrode surface. LiI-based electrolytes also show improved aging behavior both on their own and as an additive, with a similar impedance response with time as the concentrated LiFSI electrolytes. Since I is in its most reduced state, it likely prevents further reaction and may help protect the Li electrode surface with a primarily organic solid electrolyte interphase.

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Manganese-based A-site high-entropy perovskite oxide for solar thermochemical hydrogen production

Journal of Materials Chemistry A

Bishop, Sean R.; Liu, Cijie; Liu, Xingbo; King, Keith A.; Sugar, Joshua D.; Mcdaniel, Anthony H.; Salinas, Perla A.; Coker, Eric N.; Foulk, James W.; Luo, Jian

Non-stoichiometric perovskite oxides have been studied as a new family of redox oxides for solar thermochemical hydrogen (STCH) production owing to their favourable thermodynamic properties. However, conventional perovskite oxides suffer from limited phase stability and kinetic properties, and poor cyclability. Here, we report a strategy of introducing A-site multi-principal-component mixing to develop a high-entropy perovskite oxide, (La1/6Pr1/6Nd1/6Gd1/6Sr1/6Ba1/6)MnO3 (LPNGSB_Mn), which shows desirable thermodynamic and kinetics properties as well as excellent phase stability and cycling durability. LPNGSB_Mn exhibits enhanced hydrogen production (?77.5 mmol moloxide?1) compared to (La2/3Sr1/3)MnO3 (?53.5 mmol moloxide?1) in a short 1 hour redox duration and high STCH and phase stability for 50 cycles. LPNGSB_Mn possesses a moderate enthalpy of reduction (252.51-296.32 kJ (mol O)?1), a high entropy of reduction (126.95-168.85 J (mol O)?1 K?1), and fast surface oxygen exchange kinetics. All A-site cations do not show observable valence changes during the reduction and oxidation processes. This research preliminarily explores the use of one A-site high-entropy perovskite oxide for STCH.

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Predictive maturity of non-linear concrete constitutive models for impact simulation

Nuclear Engineering and Design

Hogancamp, Joshua; Jones, Christopher

This paper explores the concept of predictive maturity for non-linear concrete constitutive models employed in the computational prediction of the structural response of reinforced concrete structures to impact from free-flying missiles. Such concrete constitutive models are widely varied in complexity. Three constitutive models were utilized within the same finite element structural model to simulate the response of the IRIS III experiment. Each of the models were individually calibrated with available material testing data and also re-calibrated assuming limited availability of test data. When full calibration is possible, more sophisticated constitutive models appear to provide more predictive maturity; however, when this data is not available (e.g. for an existing structure where representative test specimens may not be available), the expected maturity is reduced. Indeed, this hypothesis is supported by the simulations that indicate good agreement with measured experimental response quantities from the IRIS III tests with complex constitutive models and full calibration, and accordingly poor predictions when less complex models are used or when the more sophisticated models are poorly calibrated. Thus, predictions of structural response where complete material testing data is not obtainable should be understood as less predictive.

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A greedy Galerkin method to efficiently select sensors for linear dynamical systems

Linear Algebra and Its Applications

Kouri, Drew P.; Udell, Madeleine; Hua, Zuhao

A key challenge in inverse problems is the selection of sensors to gather the most effective data. In this paper, we consider the problem of inferring the initial condition to a linear dynamical system and develop an efficient control-theoretical approach for greedily selecting sensors. Our method employs a Galerkin projection to reduce the size of the inverse problem, resulting in a computationally efficient algorithm for sensor selection. As a byproduct of our algorithm, we obtain a preconditioner for the inverse problem that enables the rapid recovery of the initial condition. We analyze the theoretical performance of our greedy sensor selection algorithm as well as the performance of the associated preconditioner. Finally, we verify our theoretical results on various inverse problems involving partial differential equations.

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Uncertainty quantification in machine learning for engineering design and health prognostics: A tutorial

Mechanical Systems and Signal Processing

Foulk, James W.; Nemani, Venkat; Fink, Olga; Biggio, Luca; Huan, Xun; Wang, Yan; Du, Xiaoping; Zhang, Xiaoge; Hu, Chao

On top of machine learning (ML) models, uncertainty quantification (UQ) functions as an essential layer of safety assurance that could lead to more principled decision making by enabling sound risk assessment and management. The safety and reliability improvement of ML models empowered by UQ has the potential to significantly facilitate the broad adoption of ML solutions in high-stakes decision settings, such as healthcare, manufacturing, and aviation, to name a few. In this tutorial, we aim to provide a holistic lens on emerging UQ methods for ML models with a particular focus on neural networks and the applications of these UQ methods in tackling engineering design as well as prognostics and health management problems. Towards this goal, we start with a comprehensive classification of uncertainty types, sources, and causes pertaining to UQ of ML models. Next, we provide a tutorial-style description of several state-of-the-art UQ methods: Gaussian process regression, Bayesian neural network, neural network ensemble, and deterministic UQ methods focusing on spectral-normalized neural Gaussian process. Established upon the mathematical formulations, we subsequently examine the soundness of these UQ methods quantitatively and qualitatively (by a toy regression example) to examine their strengths and shortcomings from different dimensions. Then, we review quantitative metrics commonly used to assess the quality of predictive uncertainty in classification and regression problems. Afterward, we discuss the increasingly important role of UQ of ML models in solving challenging problems in engineering design and health prognostics. Two case studies with source codes available on GitHub are used to demonstrate these UQ methods and compare their performance in the life prediction of lithium-ion batteries at the early stage (case study 1) and the remaining useful life prediction of turbofan engines (case study 2).

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Pulsed photoemission induced plasma breakdown

Journal of Physics D: Applied Physics

Iqbal, Asif; Bentz, Brian Z.; Youngman, Kevin Y.; Foulk, James W.; Zhou, Yang

This article characterises the effects of cathode photoemission leading to electrical discharges in an argon gas. We perform breakdown experiments under pulsed laser illumination of a flat cathode and observe Townsend to glow discharge transitions. The breakdown process is recorded by high-speed imaging, and time-dependent voltage and current across the electrode gap are measured for different reduced electric fields and laser intensities. We employ a 0D transient discharge model to interpret the experimental measurements. The fitted values of transferred photoelectron charge are compared with calculations from a quantum model of photoemission. The breakdown voltage is found to be lower with photoemission than without. When the applied voltage is insufficient for ion-induced secondary electron emission to sustain the plasma, laser driven photoemission can still create a breakdown where a sheath (i.e. a region near the electrode surfaces consisting of positive ions and neutrals) is formed. This photoemission induced plasma persists and decays on a much longer time scale ( ∼ 10 s μ s) than the laser pulse length ( 30 ps). The effects of different applied voltages and laser energies on the breakdown voltage and current waveforms are investigated. The discharge model can accurately predict the measured breakdown voltage curves, despite the existence of discrepancy in quantitatively describing the transient discharge current and voltage waveforms.

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Increasing resilience with wastewater reuse

Nature Water

Klise, Katherine A.

Drinking water infrastructure in urban settings is increasingly affected by population growth and disruptions like extreme weather events. This study explores how the integration of direct wastewater reuse can help to maintain drinking water service when the system is compromised.

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Transport and Energetics of Carbon Dioxide in Ionic Liquids at Aqueous Interfaces

Journal of Physical Chemistry B

Sharma, Arjun; Leverant, Calen J.; Richards, Danielle; Beamis, Christopher P.; Spoerke, Erik D.; Percival, Stephen J.; Rempe, Susan; Vanegas, Juan M.

A major hurdle in utilizing carbon dioxide (CO2) lies in separating it from industrial flue gas mixtures and finding suitable storage methods that enable its application in various industries. To address this issue, we utilized a combination of molecular dynamics simulations and experiments to investigate the behavior of CO2 in common room-temperature ionic liquids (RTIL) when in contact with aqueous interfaces. Our investigation of RTILs, [EMIM][TFSI] and [OMIM][TFSI], and their interaction with a pure water layer mimics the environment of a previously developed ultrathin enzymatic liquid membrane for CO2 separation. We analyzed diffusion constants and viscosity, which reveals that CO2 molecules exhibit faster mobility within the selected ILs compared to what would be predicted solely based on the viscosity of the liquids using the standard Einstein-Stokes relation. Moreover, we calculated the free energy of translocation for various species across the aqueous-IL interface, including CO2 and HCO3-. Free energy profiles demonstrate that CO2 exhibits a more favorable partitioning behavior in the RTILs compared to that in pure water, while a significant barrier hinders the movement of HCO3- from the aqueous layer. Experimental measurement of the CO2 transport in the RTILs corroborates the model. These findings strongly suggest that hydrophobic RTILs could serve as a promising option for selectively transporting CO2 from aqueous media and concentrating it as a preliminary step toward storage.

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Nonlinear analysis and vibro-impact characteristics of a shaft-bearing assembly

International Journal of Non-Linear Mechanics

Saunders, Brian E.; Kuether, Robert J.; Vasconcellos, Rui M.G.; Abdelkefi, Abdessattar

Here this study investigates the nonlinear frequency response of a shaft-bearing assembly with vibro-impacts occurring at the bearing clearances. The formation of nonlinear behavior as system parameters change is examined, along with the effects of asymmetries in the nominal, inherently symmetric system. The primary effect of increasing the forcing magnitude or decreasing the contact gap sizes is the formation of grazing-induced chaotic solution branches occurring over a wide frequency range near each system resonance. The system's nominal setup has very hard contact stiffness and shows no evidence of isolas or superharmonic resonances over the frequency ranges of interest. Moderate contact stiffnesses cause symmetry breaking and introduce superharmonic resonance branches of primary resonances. Even if some primary resonances are not present due to the system's inherent symmetry, their superharmonic resonances still manifest. Branches of quasiperiodic isolas (isolated resonance branches) are also discovered, along with a cloud of isolas near a high-frequency resonance. Parameter asymmetries are found to produce a few significant changes in behavior: asymmetric linear stiffness, contact stiffness, and gap size could affect the behavior of primary resonant frequencies and isolas.

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Two-Step Chemical Looping Cycle for Renewable NH3 Production Based on Non-Catalytic Co3Mo3N/Co6Mo6N Reactions

Advanced Energy Materials

Nguyen, Nhu P.; Kaur, Shaspreet; Bush, Hagan E.; Miller, James E.; Ambrosini, Andrea A.; Loutzenhiser, Peter G.

A two-step solar thermochemical looping cycle based on Co3Mo3N/Co6Mo6N reduction/nitridation reactions offers a pathway for green NH3 production that utilizes concentrated solar irradiation, H2O, and air as feedstocks. The NH3 production cycle steps both derive process heat from concentrated solar irradiation and encompass 1) the reduction of Co3Mo3N in H2 to Co6Mo6N and NH3; and 2) nitridation of Co6Mo6N to Co3Mo3N with N2. Co3Mo3N reduction/nitridation reactions are examined at different H2 and/or N2 partial pressures and temperatures. NH3 production is quantified in situ using liquid conductivity measurements coupled with mass spectrometry (MS). Solid-state characterization is performed to identify a surface oxygen layer that necessitates the addition of H2 during cycling to prevent surface oxidation by trace amounts of O2. H2 concentrations of > 5% H2/Ar and temperatures >500 °C are required to reduce Co3Mo3N to Co6Mo6N and form NH3 at 1 bar. Complete regeneration of Co3Mo3N from Co6Mo6N is achieved at conditions of 700 °C under 25–75% H2/N2. H2 pressure-swings are observed to increase NH3 production during Co3Mo3N reduction. In conclusion, the results represent the first comprehensive characterization of and definitive non-catalytic production of NH3 via chemical looping with metal nitrides and provide insights for technology development.

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Understanding the Surprising Ionic Conductivity Maximum in Zn(TFSI)2 Water/Acetonitrile Mixture Electrolytes

Journal of Physical Chemistry Letters

Zhang, Yong; Carino, Emily; Hahn, Nathan T.; Becknell, Nigel; Mars, Julian; Han, Kee S.; Mueller, Karl T.; Toney, Michael; Maginn, Edward J.; Tepavcevic, Sanja

Aqueous electrolytes composed of 0.1 M zinc bis-(trifluoromethyl-sulfonyl)-imide (Zn-(TFSI)2) and acetonitrile (ACN) were studied using combined experimental and simulation techniques. The electrolyte was found to be electrochemically stable when the ACN V% is higher than 74.4. In addition, it was found that the ionic conductivity of the mixed solvent electrolytes changes as a function of ACN composition, and a maximum was observed at 91.7 V% of ACN although the salt concentration is the same. This behavior was qualitatively reproduced by molecular dynamics (MD) simulations. Detailed analyses based on experiments and MD simulations show that at high ACN composition the water network existing in the high water composition solutions breaks. As a result, the screening effect of the solvent weakens and the correlation among ions increases, which causes a decrease in ionic conductivity at high ACN V%. Furthermore, this study provides a fundamental understanding of this complex mixed solvent electrolyte system.

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A Model-free Approach for Estimating Service Transformer Capacity Using Residential Smart Meter Data

IEEE Journal of Photovoltaics

Azzolini, Joseph A.; Reno, Matthew J.; Yusuf, Jubair

Before residential photovoltaic (PV) systems are interconnected with the grid, various planning and impact studies are conducted on detailed models of the system to ensure safety and reliability are maintained. However, these model-based analyses can be time-consuming and error-prone, representing a potential bottleneck as the pace of PV installations accelerates. Data-driven tools and analyses provide an alternate pathway to supplement or replace their model-based counterparts. In this article, a data-driven algorithm is presented for assessing the thermal limitations of PV interconnections. Using input data from residential smart meters, and without any grid models or topology information, the algorithm can determine the nameplate capacity of the service transformer supplying those customers. The algorithm was tested on multiple datasets and predicted service transformer capacity with >98% accuracy, regardless of existing PV installations. This algorithm has various applications from model-free thermal impact analysis for hosting capacity studies to error detection and calibration of existing grid models.

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Effects of hydrogen isotope type on oxidation rates for trace releases

Fire Safety Journal

Shurtz, Randy C.; Brown, Alexander L.; Takahashi, Lynelle K.; Coker, Eric N.

The fraction of tritium converted to the water form in a fire scenario is one of the metrics of greatest interest for radiological safety assessments. The conversion fraction is one of the prime variables contributing to the hazard assessment. This paper presents measurements of oxidation rates for the non-radioactive hydrogen isotopes (protium and deuterium) at sub-flammable concentrations that are typical of many of the most likely tritium release scenarios. These measurements are fit to a simplified 1-step kinetic rate expression, and the isotopic trends for protium and deuterium are extrapolated to produce a model appropriate for tritium. The effects of the new kinetic models are evaluated via CFD simulations of an ISO-9705 standard room fire that includes a trace release of hydrogen isotope (tritium), illustrating the high importance of the correct (measurement-based) kinetics to the outcome of the simulated conversion.

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Synchronous micromechanically resonant programmable photonic circuits

Nature Communications

Leenheer, Andrew J.; Dominguez, Daniel; Eichenfield, Matt; Dong, Mark; Boyle, Julia M.; Palm, Kevin J.; Zimmermann, Matthew; Witte, Alex; Gilbert, Gerald; Englund, Dirk

Programmable photonic integrated circuits (PICs) are emerging as powerful tools for control of light, with applications in quantum information processing, optical range finding, and artificial intelligence. Low-power implementations of these PICs involve micromechanical structures driven capacitively or piezoelectrically but are often limited in modulation bandwidth by mechanical resonances and high operating voltages. Here we introduce a synchronous, micromechanically resonant design architecture for programmable PICs and a proof-of-principle 1×8 photonic switch using piezoelectric optical phase shifters. Our design purposefully exploits high-frequency mechanical resonances and optically broadband components for larger modulation responses on the order of the mechanical quality factor Q m while maintaining fast switching speeds. We experimentally show switching cycles of all 8 channels spaced by approximately 11 ns and operating at 4.6 dB average modulation enhancement. Future advances in micromechanical devices with high Qm, which can exceed 10000, should enable an improved series of low-voltage and high-speed programmable PICs.

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pvlib iotools—Open-source Python functions for seamless access to solar irradiance data

Solar Energy

Jensen, Adam R.; Anderson, Kevin S.; Holmgren, William F.; Mikofski, Mark A.; Hansen, Clifford; Boeman, Leland J.; Loonen, Roel

Access to accurate solar resource data is critical for numerous applications, including estimating the yield of solar energy systems, developing radiation models, and validating irradiance datasets. However, lack of standardization in data formats and access interfaces across providers constitutes a major barrier to entry for new users. pvlib python's iotools subpackage aims to solve this issue by providing standardized Python functions for reading local files and retrieving data from external providers. All functions follow a uniform pattern and return convenient data outputs, allowing users to seamlessly switch between data providers and explore alternative datasets. The pvlib package is community-developed on GitHub: https://github.com/pvlib/pvlib-python. As of pvlib python version 0.9.5, the iotools subpackage supports 12 different datasets, including ground measurement, reanalysis, and satellite-derived irradiance data. The supported ground measurement networks include the Baseline Surface Radiation Network (BSRN), NREL MIDC, SRML, SOLRAD, SURFRAD, and the US Climate Reference Network (CRN). Additionally, satellite-derived and reanalysis irradiance data from the following sources are supported: PVGIS (SARAH & ERA5), NSRDB PSM3, and CAMS Radiation Service (including McClear clear-sky irradiance).

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A Workflow for Accelerating Multimodal Data Collection for Electrodeposited Films

Integrating Materials and Manufacturing Innovation

Bassett, Kimberly L.; Watkins, Tylan; Coleman, Jonathan J.; Bianco, Nathan R.; Bailey, Lauren S.; Pillars, Jamin R.; Williams, Samuel G.; Babuska, Tomas F.; Curry, John; Delrio, F.W.; Henriksen, Amelia; Garland, Anthony; Hall, Justin; Boyce, Brad L.; Krick, Brandon A.

Future machine learning strategies for materials process optimization will likely replace human capital-intensive artisan research with autonomous and/or accelerated approaches. Such automation enables accelerated multimodal characterization that simultaneously minimizes human errors, lowers costs, enhances statistical sampling, and allows scientists to allocate their time to critical thinking instead of repetitive manual tasks. Previous acceleration efforts to synthesize and evaluate materials have often employed elaborate robotic self-driving laboratories or used specialized strategies that are difficult to generalize. Herein we describe an implemented workflow for accelerating the multimodal characterization of a combinatorial set of 915 electroplated Ni and Ni–Fe thin films resulting in a data cube with over 160,000 individual data files. Our acceleration strategies do not require manufacturing-scale resources and are thus amenable to typical materials research facilities in academic, government, or commercial laboratories. The workflow demonstrated the acceleration of six characterization modalities: optical microscopy, laser profilometry, X-ray diffraction, X-ray fluorescence, nanoindentation, and tribological (friction and wear) testing, each with speedup factors ranging from 13–46x. In addition, automated data upload to a repository using FAIR data principles was accelerated by 64x.

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Customized predictions of the installed cost of behind-the-meter battery energy storage systems

Energy Reports

Benson, Andrew G.

Behind-the-meter (BTM) battery energy storage systems (BESS) are undergoing rapid deployment. Simple equations to estimate the installed cost of BTM BESS are often necessary when a rigorous, bottom-up cost estimate is not available or not appropriate, in applications such as energy system modeling, informing a BESS sizing decision, and cost benchmarking. Drawing on project-level data from California, I estimate several predictive regression models of the installed cost of a BTM BESS as a function of energy capacity and power capacity. The models are evaluated for in-sample goodness-of-fit and out-of-sample predictive accuracy. The results of these analyses indicate stronger empirical support for models with natural log transformations of installed cost, energy, and power as compared against widely-used models that posit a linear relationship among the untransformed versions of these variables. Building on these results, I present a logarithmic model that can predict installed cost conditional on energy capacity, power capacity, AC or DC coupling with distributed generation, customer sector, and local wages for electricians. I document how the model can be easily extrapolated to future years, either with forecasts from other sources or by re-estimating the parameters with the latest data.

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Frequency combs in optically injected terahertz ring quantum cascade lasers

APL Photonics

Istiak Khan, Istiak; Xiao, Zhenyang; Addamane, Sadhvikas J.; Burghoff, David

Quantum cascade lasers (QCLs) have emerged as promising candidates for generating chip-scale frequency combs in mid-infrared and terahertz wavelengths. In this work, we demonstrate frequency comb formation in ring terahertz QCLs using the injection of light from a distributed feedback (DFB) laser. The DFB design frequency is chosen to match the modes of the ring cavity (near 3.3 THz), and light from the DFB is injected into the ring QCL via a bus waveguide. By controlling the power and frequency of the optical injection, we show that combs can be selectively formed and controlled in the ring cavity. Numerical modeling suggests that this comb is primarily frequency-modulated in character, with the injection serving to trigger comb formation. We also show that the ring can be used as a filter to control the output of the DFB QCL, potentially being of interest in terahertz photonic integrated circuits. Our work demonstrates that waveguide couplers are a compelling approach for injecting and extracting radiation from ring terahertz combs and offer exciting possibilities for the generation of new comb states in terahertz, such as frequency-modulated waves, solitons, and more.

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Deep material network via a quilting strategy: visualization for explainability and recursive training for improved accuracy

npj Computational Materials

Dingreville, Remi; Shin, Dongil; Alberdi, Ryan; Lebensohn, Ricardo A.

Recent developments integrating micromechanics and neural networks offer promising paths for rapid predictions of the response of heterogeneous materials with similar accuracy as direct numerical simulations. The deep material network is one such approaches, featuring a multi-layer network and micromechanics building blocks trained on anisotropic linear elastic properties. Once trained, the network acts as a reduced-order model, which can extrapolate the material’s behavior to more general constitutive laws, including nonlinear behaviors, without the need to be retrained. However, current training methods initialize network parameters randomly, incurring inevitable training and calibration errors. Here, we introduce a way to visualize the network parameters as an analogous unit cell and use this visualization to “quilt” patches of shallower networks to initialize deeper networks for a recursive training strategy. The result is an improvement in the accuracy and calibration performance of the network and an intuitive visual representation of the network for better explainability.

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Complementing a continuum thermodynamic approach to constitutive modeling with symbolic regression

Journal of the Mechanics and Physics of Solids

Garbrecht, Karl; Birky, Donovan; Lester, Brian T.; Emery, John M.; Hochhalter, Jacob

An interpretable machine learning method, physics-informed genetic programming-based symbolic regression (P-GPSR), is integrated into a continuum thermodynamic approach to developing constitutive models. The proposed strategy for combining a thermodynamic analysis with P-GPSR is demonstrated by generating a yield function for an idealized material with voids, i.e., the Gurson yield function. First, a thermodynamic-based analysis is used to derive model requirements that are exploited in a custom P-GPSR implementation as fitness criteria or are strongly enforced in the solution. The P-GPSR implementation improved accuracy, generalizability, and training time compared to the same GPSR code without physics-informed fitness criteria. The yield function generated through the P-GPSR framework is in the form of a composite function that describes a class of materials and is characteristically more interpretable than GPSR-derived equations. The physical significance of the input functions learned by P-GPSR within the composite function is acquired from the thermodynamic analysis. Fundamental explanations of why the implemented P-GPSR capabilities improve results over a conventional GPSR algorithm are provided.

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Characterizing dynamic test fixtures through the modal projection error

Mechanical Systems and Signal Processing

Rouse, Jerry W.

Across many industries and engineering disciplines, systems of components are designed and deployed into their operational environments. It is the desire of the engineer to be able to predict if the component or system will survive its operational environment or if the component will fail due to mechanical stresses. One method to determine if the component will survive the operational environment is to expose the component to a simulation of the environment in a laboratory. One difficulty in executing such a test is that the component may not have the same boundary condition in both the laboratory and operational configurations. This paper presents a novel method of quantifying the error in the modal domain that occurs from the impedance difference between the laboratory test fixture and the operational configuration. The error is calculated from the projection from one mode shape space to the other, and the error is in terms of each mode of the operational configuration. The error provides insight into the effectiveness of the test fixture with respect to the ability to recreate the individual mode shapes of the operational configuration. A case study is presented to show the error in the modal projection between two configurations is a lower limit for the error that can be achieved by a laboratory test.

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Lipid-coated mesoporous silica nanoparticles for anti-viral applications via delivery of CRISPR-Cas9 ribonucleoproteins

Scientific Reports

LaBauve, Annette E.; Saada, Edwin A.; Jones, Iris K.A.; Mosesso, Richard A.; Noureddine, Achraf; Techel, Jessica L.; Gomez, Andrew G.; Collette, Nicole; Sherman, Michael B.; Serda, Rita E.; Butler, Kimberly S.; Brinker, C.J.; Schoeniger, Joseph S.; Sasaki, Darryl; Negrete, Oscar N.

Emerging and re-emerging viral pathogens present a unique challenge for anti-viral therapeutic development. Anti-viral approaches with high flexibility and rapid production times are essential for combating these high-pandemic risk viruses. CRISPR-Cas technologies have been extensively repurposed to treat a variety of diseases, with recent work expanding into potential applications against viral infections. However, delivery still presents a major challenge for these technologies. Lipid-coated mesoporous silica nanoparticles (LCMSNs) offer an attractive delivery vehicle for a variety of cargos due to their high biocompatibility, tractable synthesis, and amenability to chemical functionalization. Here, we report the use of LCMSNs to deliver CRISPR-Cas9 ribonucleoproteins (RNPs) that target the Niemann–Pick disease type C1 gene, an essential host factor required for entry of the high-pandemic risk pathogen Ebola virus, demonstrating an efficient reduction in viral infection. We further highlight successful in vivo delivery of the RNP-LCMSN platform to the mouse liver via systemic administration.

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Non-canonical d-xylose and l-arabinose metabolism via d-arabitol in the oleaginous yeast Rhodosporidium toruloides

Microbial Cell Factories

Adamczyk, Paul A.; Gladden, John M.; Coradetti, Samuel

R. toruloides is an oleaginous yeast, with diverse metabolic capacities and high tolerance for inhibitory compounds abundant in plant biomass hydrolysates. While R. toruloides grows on several pentose sugars and alcohols, further engineering of the native pathway is required for efficient conversion of biomass-derived sugars to higher value bioproducts. A previous high-throughput study inferred that R. toruloides possesses a non-canonical l-arabinose and d-xylose metabolism proceeding through d-arabitol and d-ribulose. In this study, we present a combination of genetic and metabolite data that refine and extend that model. Chiral separations definitively illustrate that d-arabitol is the enantiomer that accumulates under pentose metabolism. Deletion of putative d-arabitol-2-dehydrogenase (RTO4_9990) results in > 75% conversion of d-xylose to d-arabitol, and is growth-complemented on pentoses by heterologous xylulose kinase expression. Deletion of putative d-ribulose kinase (RTO4_14368) arrests all growth on any pentose tested. Analysis of several pentose dehydrogenase mutants elucidates a complex pathway with multiple enzymes mediating multiple different reactions in differing combinations, from which we also inferred a putative l-ribulose utilization pathway. Our results suggest that we have identified enzymes responsible for the majority of pathway flux, with additional unknown enzymes providing accessory activity at multiple steps. Further biochemical characterization of the enzymes described here will enable a more complete and quantitative understanding of R. toruloides pentose metabolism. These findings add to a growing understanding of the diversity and complexity of microbial pentose metabolism.

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Interface potentials inside solid-state batteries: Origins and implications

MRS Bulletin

Qi, Yue; Swift, Michael W.; Fuller, Elliot J.; Talin, Albert A.

Interface resistance has become a significant bottleneck for solid-state batteries (SSBs). Most studies of interface resistance have focused on extrinsic mechanisms such as interface reactions and imperfect contact between electrodes and solid electrolytes. Interface potentials are an important intrinsic mechanism that is often ignored. Here, we highlight Kelvin probe force microscopy (KPFM) as a tool to image the local potential at interfaces inside SSBs, examining the existing literature and discussing challenges in interpretation. Drawing analogies with electron transport in metal/semiconductor interfaces, we showcase a formalism that predicts intrinsic ionic resistance based on the properties of the contacting phases, and we emphasize that future battery designs should start from material pairs with low intrinsic resistance. We conclude by outlining future directions in the study of interface potentials through both theory and experiment. Graphic abstract: [Figure not available: see fulltext.]

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Genome sequence and characterization of a novel Pseudomonas putida phage, MiCath

Scientific Reports

Jaryenneh, James D.; Schoeniger, Joseph S.; Mageeney, Catherine M.

Pseudomonads are ubiquitous bacteria with importance in medicine, soil, agriculture, and biomanufacturing. We report a novel Pseudomonas putida phage, MiCath, which is the first known phage infecting P. putida S12, a strain increasingly used as a synthetic biology chassis. MiCath was isolated from garden soil under a tomato plant using P. putida S12 as a host and was also found to infect four other P. putida strains. MiCath has a ~ 61 kbp double-stranded DNA genome which encodes 97 predicted open reading frames (ORFs); functions could only be predicted for 48 ORFs using comparative genomics. Functions include structural phage proteins, other common phage proteins (e.g., terminase), a queuosine gene cassette, a cas4 exonuclease, and an endosialidase. Restriction digestion analysis suggests the queuosine gene cassette encodes a pathway capable of modification of guanine residues. When compared to other phage genomes, MiCath shares at most 74% nucleotide identity over 2% of the genome with any sequenced phage. Overall, MiCath is a novel phage with no close relatives, encoding many unique gene products.

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Engineering transcriptional regulation of pentose metabolism in Rhodosporidium toruloides for improved conversion of xylose to bioproducts

Microbial Cell Factories

Adamczyk, Paul A.; Gladden, John M.; Coradetti, Samuel; Liu, Di; Gao, Yuqian; Otoupal, Peter B.; Geiselman, Gina M.; Webb-Robertson, Bobbie J.M.; Burnet, Meagan C.; Kim, Young M.; Burnum-Johnson, Kristin E.; Magnuson, Jon

Efficient conversion of pentose sugars remains a significant barrier to the replacement of petroleum-derived chemicals with plant biomass-derived bioproducts. While the oleaginous yeast Rhodosporidium toruloides (also known as Rhodotorula toruloides) has a relatively robust native metabolism of pentose sugars compared to other wild yeasts, faster assimilation of those sugars will be required for industrial utilization of pentoses. To increase the rate of pentose assimilation in R. toruloides, we leveraged previously reported high-throughput fitness data to identify potential regulators of pentose catabolism. Two genes were selected for further investigation, a putative transcription factor (RTO4_12978, Pnt1) and a homolog of a glucose transceptor involved in carbon catabolite repression (RTO4_11990). Overexpression of Pnt1 increased the specific growth rate approximately twofold early in cultures on xylose and increased the maximum specific growth by 18% while decreasing accumulation of arabitol and xylitol in fast-growing cultures. Improved growth dynamics on xylose translated to a 120% increase in the overall rate of xylose conversion to fatty alcohols in batch culture. Proteomic analysis confirmed that Pnt1 is a major regulator of pentose catabolism in R. toruloides. Deletion of RTO4_11990 increased the growth rate on xylose, but did not relieve carbon catabolite repression in the presence of glucose. Carbon catabolite repression signaling networks remain poorly characterized in R. toruloides and likely comprise a different set of proteins than those mainly characterized in ascomycete fungi.

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The brain’s unique take on algorithms

Nature Communications

Aimone, James B.; Parekh, Ojas D.

Perspectives for understanding the brain vary across disciplines and this has challenged our ability to describe the brain’s functions. In this comment, we discuss how emerging theoretical computing frameworks that bridge top-down algorithm and bottom-up physics approaches may be ideally suited for guiding the development of neural computing technologies such as neuromorphic hardware and artificial intelligence. Furthermore, we discuss how this balanced perspective may be necessary to incorporate the neurobiological details that are critical for describing the neural computational disruptions within mental health and neurological disorders.

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Trajectory sampling and finite-size effects in first-principles stopping power calculations

npj Computational Materials

Kononov, Alina K.; Hentschel, Thomas W.; Hansen, Stephanie B.; Baczewski, Andrew D.

Real-time time-dependent density functional theory (TDDFT) is presently the most accurate available method for computing electronic stopping powers from first principles. However, obtaining application-relevant results often involves either costly averages over multiple calculations or ad hoc selection of a representative ion trajectory. We consider a broadly applicable, quantitative metric for evaluating and optimizing trajectories in this context. This methodology enables rigorous analysis of the failure modes of various common trajectory choices in crystalline materials. Although randomly selecting trajectories is common practice in stopping power calculations in solids, we show that nearly 30% of random trajectories in an FCC aluminum crystal will not representatively sample the material over the time and length scales feasibly simulated with TDDFT, and unrepresentative choices incur errors of up to 60%. We also show that finite-size effects depend on ion trajectory via “ouroboros” effects beyond the prevailing plasmon-based interpretation, and we propose a cost-reducing scheme to obtain converged results even when expensive core-electron contributions preclude large supercells. This work helps to mitigate poorly controlled approximations in first-principles stopping power calculations, allowing 1–2 order of magnitude cost reductions for obtaining representatively averaged and converged results.

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Low Threshold, Long Wavelength Interband Cascade Lasers With High Voltage Efficiencies

IEEE Journal of Quantum Electronics

Massengale, Jeremy A.; Shen, Yixuan; Yang, Rui Q.; Hawkins, Samuel D.; Muhowski, Aaron

We report on the substantial advancement of long wavelength InAs-based interband cascade lasers (ICLs) utilizing advanced waveguides formed from hybrid cladding layers and targeting the 10-12μm wavelength region. Modifications in the hole injector have improved carrier transport in these ICLs, resulting in significantly reduced threshold voltages (Vth) as low as 3.62 V at 80 K. Consequently, much higher voltage efficiencies were observed, peaking at about 73% at 10.3μm and allowing for large output powers of more than 100 mW/facet. Also, low threshold current densities (Jth) of 8.8 A/cm2 in cw mode and 7.6 A/cm2 in pulsed mode near 10μm were observed; a result of adjustments in the GaInSb hole well composition intended to reduce the overall strain accumulation in the ICL. Furthermore, an ICL from the second wafer operating at a longer wavelength achieved a peak voltage efficiency of 57% at 11.7μm, with a peak output power of more than 27 mW/facet. This ICL went on to lase beyond 12μm in both cw and pulsed modes, representing a new milestone in long wavelength coverage for ICLs with the standard W-QW active region.

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Predicting electronic structures at any length scale with machine learning

npj Computational Materials

Fiedler, Lenz; Modine, Normand A.; Schmerler, Steve; Vogel, Dayton J.; Popoola, Gabriel A.; Thompson, A.P.; Rajamanickam, Sivasankaran; Cangi, Attila

The properties of electrons in matter are of fundamental importance. They give rise to virtually all material properties and determine the physics at play in objects ranging from semiconductor devices to the interior of giant gas planets. Modeling and simulation of such diverse applications rely primarily on density functional theory (DFT), which has become the principal method for predicting the electronic structure of matter. While DFT calculations have proven to be very useful, their computational scaling limits them to small systems. We have developed a machine learning framework for predicting the electronic structure on any length scale. It shows up to three orders of magnitude speedup on systems where DFT is tractable and, more importantly, enables predictions on scales where DFT calculations are infeasible. Our work demonstrates how machine learning circumvents a long-standing computational bottleneck and advances materials science to frontiers intractable with any current solutions.

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Results 1501–1550 of 99,299
Results 1501–1550 of 99,299