Publications
Dual gene expression analysis identifies factors associated with Staphylococcus aureus virulence in diabetic mice
Infection and Immunity
Staphylococcus aureus is a major human pathogen of the skin. The global burden of diabetes is high, with S. aureus being a major complication of diabetic wound infections. We investigated how the diabetic environment influences S. aureus skin infection and observed an increased susceptibility to infection in mouse models of both type I and type II diabetes. A dual gene expression approach was taken to investigate transcriptional alterations in both the host and bacterium after infection. While analysis of the host response revealed only minor changes between infected control and diabetic mice, we observed that S. aureus isolated from diabetic mice had significant increases in the levels of genes associated with translation and posttranslational modification and chaperones and reductions in the levels of genes associated with amino acid transport and metabolism. One family of genes upregulated in S. aureus isolated from diabetic lesions encoded the Clp proteases, associated with the misfolded protein response. The Clp proteases were found to be partially glucose regulated as well as influencing the hemolytic activity of S. aureus. Strains lacking the Clp proteases ClpX, ClpC, and ClpP were significantly attenuated in our animal model of skin infection, with significant reductions observed in dermonecrosis and bacterial burden. In particular, mutations in clpP and clpX were significantly attenuated and remained attenuated in both normal and diabetic mice. Our data suggest that the diabetic environment also causes changes to occur in invading pathogens, and one of these virulence determinants is the Clp protease system.
Nanoparticle Delivery Platforms for Controlled Inhibition of CRISPR Gene Editing
Abstract not provided.
DARPA.PREPARE.poster
Abstract not provided.
Lipid-Coated Mesoporous Silica Nanoparticle Technology for Antiviral Delivery to Inhibit Encephalitic Alphavirus Infection
Elucidation & manipulation of host-pathogen interactions for development of countermeasures against intracellular bacterial pathogen Burkholderiapseudomallei
Abstract not provided.
Lipid-Coated Mesoporous Silica Nanoparticles for Antiviral Drug Delivery to Inhibit Encephalitic Alphavirus Infection
Lipid-Coated Mesoporous Silica Nanoparticle Technology for the Delivery of Antivirals to Inhibit Encephalitic Alphavirus Infection
Abstract not provided.
A rapid spin column-based method to enrich pathogen transcripts from eukaryotic host cells prior to sequencing
PLoS ONE
When analyzing pathogen transcriptomes during the infection of host cells, the signal-to-background (pathogen-to-host) ratio of nucleic acids (NA) in infected samples is very small. Despite the advancements in next-generation sequencing, the minute amount of pathogen NA makes standard RNA-seq library preps inadequate for effective gene-level analysis of the pathogen in cases with low bacterial loads. In order to provide a more complete picture of the pathogen transcriptome during an infection, we developed a novel pathogen enrichment technique, which can enrich for transcripts from any cultivable bacteria or virus, using common, readily available laboratory equipment and reagents. To evenly enrich for pathogen transcripts, we generate biotinylated pathogen-targeted capture probes in an enzymatic process using the entire genome of the pathogen as a template. The capture probes are hybridized to a strand-specific cDNA library generated from an RNA sample. The biotinylated probes are captured on a monomeric avidin resin in a miniature spin column, and enriched pathogen-specific cDNA is eluted following a series of washes. To test this method, we performed an in vitro time-course infection using Klebsiella pneumoniae to infect murine macrophage cells. K. pneumoniae transcript enrichment efficiency was evaluated using RNA-seq. Bacterial transcripts were enriched up to ∼400-fold, and allowed the recovery of transcripts from ∼2000-3600 genes not observed in untreated control samples. These additional transcripts revealed interesting aspects of K. pneumoniae biology including the expression of putative virulence factors and the expression of several genes responsible for antibiotic resistance even in the absence of drugs.
A Capture-Based Technique for Enhancing RNA-Seq Analyses of Bacterial Transcriptomes During In Vitro and In Vivo Infections
Abstract not provided.
Deciphering Antibiotic Resistance
Abstract not provided.
A capture-based technique for enhancing RNA-seq analysis of bacterial transcriptomes during in vitro and in vivo infections
Abstract not provided.
A Capture-Based Technique for Enhancing RNA-Seq Analysis of Bacterial Transcriptomes During in vitro and in vivo Infections
Abstract not provided.
13 Results