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Evaluating the impact of SDC on the GMRES iterative solver

Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS

Elliott, James; Hoemmen, Mark F.; Mueller, Frank

Increasing parallelism and transistor density, along with increasingly tighter energy and peak power constraints, may force exposure of occasionally incorrect computation or storage to application codes. Silent data corruption (SDC) will likely be infrequent, yet one SDC suffices to make numerical algorithms like iterative linear solvers cease progress towards the correct answer. Thus, we focus on resilience of the iterative linear solver GMRES to a single transient SDC. We derive inexpensive checks to detect the effects of an SDC in GMRES that work for a more general SDC model than presuming a bit flip. Our experiments show that when GMRES is used as the inner solver of an inner-outer iteration, it can 'run through' SDC of almost any magnitude in the computationally intensive orthogonalization phase. That is, it gets the right answer using faulty data without any required roll back. Those SDCs which it cannot run through, get caught by our detection scheme. © 2014 IEEE.

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Evaluating convergence of reduced order models using nonlinear normal modes

Conference Proceedings of the Society for Experimental Mechanics Series

Brake, M.R.W.; Brake, M.R.W.; Allen, Mathew S.

It is often prohibitively expensive to integrate the response of a high order nonlinear system, such as a finite element model of a nonlinear structure, so a set of linear eigenvectors is often used as a basis in order to create a reduced order model (ROM). By augmenting the linear basis with a small set of discontinuous basis functions, ROMs of systems with local nonlinearities have been shown to compare well with the corresponding full order models.When evaluating the quality of a ROM, it is common to compare the time response of the model to that of the full order system, but the time response is a complicated function that depends on a predetermined set of initial conditions or external force. This is difficult to use as a metric to measure convergence of a ROM, particularly for systems with strong, non-smooth nonlinearities, for two reasons: (1) the accuracy of the response depends directly on the amplitude of the load/initial conditions, and (2) small differences between two signals can become large over time. Here, a validation metric is proposed that is based solely on the ROM’s equations of motion. The nonlinear normalmodes (NNMs) of the ROMs are computed and tracked as modes are added to the basis set. The NNMs are expected to converge to the true NNMs of the full order system with a sufficient set of basis vectors. This comparison captures the effect of the nonlinearity through a range of amplitudes of the system, and is akin to comparing natural frequencies and mode shapes for a linear structure. In this research, the convergencemetric is evaluated on a simply supported beam with a contacting nonlinearity modeled as a unilateral piecewise-linear function. Various time responses are compared to show that the NNMs provide a good measure of the accuracy of the ROM. The results suggest the feasibility of using NNMs as a convergencemetric for reduced order modeling of systems with various types of nonlinearities.

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System-level benefits of extracting and treating saline water from geologic formations during national-scale carbon capture and storage

International Journal of Greenhouse Gas Control

Roach, Jesse D.; Heath, Jason E.; Kobos, Peter; Klise, Geoffrey T.

Despite economic, political, legal, and technical challenges, carbon dioxide (CO2) capture and storage (CCS) holds promise as a means to substantially reduce anthropogenic atmospheric emissions of carbon dioxide. One of the technical challenges to CCS is an accurate quantification of the potential geologic storage resource. This analysis uses the publically available national-scale, systems-level Water Energy and Carbon Sequestration simulation model (WECSsim), to show that, depending on assumed boundary conditions, the majority of storage associated with large-scale CCS in the U.S. (on the order of 90-100GT of total reduced emissions) would occur at a small number of well-located sites with favorable geologic properties. WECSsim, through the use of marginal abatement cost curves, shows that under such a scenario, added costs associated with resident saline water extraction, transport, and treatment (SWETT) are justified by resulting increases in carbon dioxide storage efficiency in the geologic formation. This argument is strengthened when geologic uncertainty is taken into consideration. Like an insurance policy, the enhanced carbon dioxide storage efficiency that comes from SWETT adds well-defined costs to reduce potential economic risks associated with overestimates of the available geologic storage resource. © 2014 Elsevier Ltd.

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BFS and coloring-based parallel algorithms for strongly connected components and related problems

Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS

Slota, George M.; Rajamanickam, Sivasankaran; Madduri, Kamesh

Finding the strongly connected components (SCCs) of a directed graph is a fundamental graph-theoretic problem. Tarjan's algorithm is an efficient serial algorithm to find SCCs, but relies on the hard-to-parallelize depth-first search (DFS). We observe that implementations of several parallel SCC detection algorithms show poor parallel performance on modern multicore platforms and large-scale networks. This paper introduces the Multistep method, a new approach that avoids work inefficiencies seen in prior SCC approaches. It does not rely on DFS, but instead uses a combination of breadth-first search (BFS) and a parallel graph coloring routine. We show that the Multistep method scales well on several real-world graphs, with performance fairly independent of topological properties such as the size of the largest SCC and the total number of SCCs. On a 16-core Intel Xeon platform, our algorithm achieves a 20X speedup over the serial approach on a 2 billion edge graph, fully decomposing it in under two seconds. For our collection of test networks, we observe that the Multistep method is 1.92X faster (mean speedup) than the state-of-the-art Hong et al. SCC method. In addition, we modify the Multistep method to find connected and weakly connected components, as well as introduce a novel algorithm for determining articulation vertices of biconnected components. These approaches all utilize the same underlying BFS and coloring routines. © 2014 IEEE.

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Optical magnetic mirrors without metals

Optica

Liu, Sheng; Sinclair, Michael B.; Mahony, Thomas S.; Jun, Young C.; Campione, Salvatore; Ginn, James; Bender, Daniel A.; Wendt, Joel R.; Ihlefeld, Jon F.; Clem, Paul; Wright, Jeremy B.; Brener, Igal

The reflection of an optical wave from metal, arising from strong interactions between the optical electric field and the free carriers of the metal, is accompanied by a phase reversal of the reflected electric field. A far less common route to achieving high reflectivity exploits strong interactions between the material and the optical magnetic field to produce a “magnetic mirror” that does not reverse the phase of the reflected electric field. At optical frequencies, the magnetic properties required for strong interaction can be achieved only by using artificially tailored materials. Here, we experimentally demonstrate, for the first time to the best of our knowledge, the magnetic mirror behavior of a low-loss all-dielectric metasurface at infrared optical frequencies through direct measurements of the phase and amplitude of the reflected optical wave. The enhanced absorption and emission of transverse-electric dipoles placed close to magnetic mirrors can lead to exciting new advances in sensors, photodetectors, and light sources.

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In-Cylinder Mechanisms of Soot Reduction by Close-Coupled Post-Injections as Revealed by Imaging of Soot Luminosity and Planar Laser-Induced Soot Incandescence in a Heavy-Duty Diesel Engine

SAE International Journal of Engines

O'Connor, Jacqueline; Musculus, Mark P.B.

Post injections have been shown to reduce engine-out soot emissions in a variety of engine architectures and at a range of operating points. In this study, measurements of the engine-out soot from a heavy-duty optical diesel engine have conclusively shown that interaction between the post-injection jet and soot from the main injection must be, at least in part, responsible for the reduction in engine-out soot. Extensive measurements of the spatial and temporal evolution of soot using high-speed imaging of soot natural luminosity (soot-NL) and planar-laser induced incandescence of soot (soot-PLII) at four vertical elevations in the piston bowl at a range of crank angle timings provide definitive optical evidence of these interactions. The soot-PLII images provide some of the most conclusive evidence to date that the addition of a post injection dramatically changes the topology and quantity of in-cylinder soot. As the post jet penetrates toward the bowl wall, it carves out regions from the main-injection soot structures, either through displacement of the soot or through rapid and progressive oxidation of the soot. Later in the cycle, the regions of main-injection soot on either side of the jet centerline, clearly present in the main-injection-only case, have all but disappeared when the post-injection is added - only the soot in the post-injection pathway remains. Evidence of this apparent late-cycle oxidation of main-injection soot appears in both the soot-PLII and soot-NL images, providing substantial support for the mixing mechanism of soot reduction with post injections. Implications of these findings and future work are also discussed. © 2014 SAE International.

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Reconstructing householder vectors from tall-skinny QR

Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS

Ballard, Grey B.; Demmel, James; Grigori, Laura; Jacquelin, Mathias; Nguyen, Hong D.; Solomonik, Edgar

The Tall-Skinny QR (TSQR) algorithm is more communication efficient than the standard Householder algorithm for QR decomposition of matrices with many more rows than columns. However, TSQR produces a different representation of the orthogonal factor and therefore requires more software development to support the new representation. Further, implicitly applying the orthogonal factor to the trailing matrix in the context of factoring a square matrix is more complicated and costly than with the Householder representation. We show how to perform TSQR and then reconstruct the Householder vector representation with the same asymptotic communication efficiency and little extra computational cost. We demonstrate the high performance and numerical stability of this algorithm both theoretically and empirically. The new Householder reconstruction algorithm allows us to design more efficient parallel QR algorithms, with significantly lower latency cost compared to Householder QR and lower bandwidth and latency costs compared with Communication-Avoiding QR (CAQR) algorithm. As a result, our final parallel QR algorithm outperforms ScaLAPACK and Elemental implementations of Householder QR and our implementation of CAQR on the Hopper Cray XE6 NERSC system. We also provide algorithmic improvements to the ScaLAPACK and CAQR algorithms. © 2014 IEEE.

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Simulations of bcc tantalum screw dislocations: Why classical inter-atomic potentials predict {1 1 2} slip

Computational Materials Science

Hale, Lucas M.; Zimmerman, Jonathan A.; Weinberger, Christopher R.

A thorough molecular dynamics study is performed to investigate the predicted {1 1 2} yield behavior associated with the slip of a single screw dislocation using classical atomistic potentials of body-centered cubic metals. Previous works have drawn an association between the structure of the stable screw dislocation core and the resulting slip nature showing that a polarized core can lead to {1 1 2} slip, while a non-polarized core is expected to slip on {1 1 0} planes. Here, results from five different potentials for tantalum are presented as they all show slip to be primarily active along {1 1 2} planes even though the stable core structure is non-polar. This {1 1 2} slip occurs through dislocation glide on two different {1 1 0} planes due to the presence of a metastable split core structure, and regardless of the relative magnitudes of resolved shear stresses for the two {1 1 0} planes. Further investigations shows that the split core structure, an artifact of the atomic potentials used, also influences slip behavior associated with dynamic motion of kinked dislocations in ambient temperature simulations. © 2014 Elsevier B.V. All rights reserved.

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Lightning responses on a finite cylindrical enclosure

Progress In Electromagnetics Research B

Chen, Kenneth C.; Warne, Larry K.

The voltage on a single-turn loop inside an enclosure characterizes the enclosure shielding effectiveness against a lightning insult. In this paper, the maximum induced voltage on a single-turn loop inside an enclosure from lightning coupling to a metal enclosure wall is expressed in terms of two multiplicative factors: (A) the normalized enclosure wall peak penetration ratio (i.e., ratio of the peak interior electric field multiplied by the sheet conductance to the exterior magnetic field) and (B) the DC voltage on an ideal optimum coupling loop assuming the ideal penetration ratio of one. As a result of the decomposition, the variation of the peak penetration ratio (A) for different coupling mechanisms is found to be small; the difference in the maximum voltage hence arises from the DC voltage on the optimum coupling loop (B). Maximum voltages on an optimum coupling loop inside a finite cylinder enclosure for direct attachment and a lightning line source at different distances from the enclosure are given in Table 3.

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Effects of ionizing radiation on TaOx-based memristive devices

IEEE Aerospace Conference Proceedings

Mclain, Michael; Hughart, David R.; Hanson, Donald J.; Marinella, Matthew

This paper evaluates the effects of ionizing radiation on tantalum oxide (TaOx) memristors. The data obtained from 60Co gamma ray and 10 keV X-ray ionizing radiation experiments indicate that it is possible for the devices to switch from a high resistance off-state to a low resistance on-state after a total ionizing dose (TID) step stress threshold has been surpassed. During irradiation, the devices were floating, grounded, or biased with a 1 Hz square wave with an amplitude of ±100 mV. While floating the terminals is not a typical bias condition within a circuit, it is speculated that this condition might be worst-case because of the lack of a discharge path. If a read measurement is performed prior to reaching the charge threshold, the devices 'reset' back to a pre-irradiation state. This suggests that the devices do not have a cumulative TID effect. However, it was observed that having a continuous bias on the device during the TID exposure did not always have the same effect. The TID threshold level at which the devices switch resistance states varies from device to device; the enhanced susceptibility observed in some devices is still under investigation. After a radiation-induced resistance change, all of the devices could be reset and still functioned properly. When the devices were set into a low resistance on-state prior to irradiation, there was not a significant variation in the resistance post-irradiation (i.e., the devices were still in the on-state). Overall, the memristor TID performance is promising and could potentially enable the discovery of a radiation-hardened nonvolatile memory technology to be used in space and aerospace applications. © 2014 IEEE.

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Modified helix-like instability structure on imploding z-pinch liners that are pre-imposed with a uniform axial magnetic field

Physics of Plasmas

Awe, Thomas J.; Owen, Albert C.; Gomez, Matthew R.; Hansen, Stephanie B.; Herrmann, Mark H.; Jones, Michael; Mckenney, John; Robertson, G.K.; Rochau, G.A.; Savage, Mark E.; Stygar, William A.; Jennings, Christopher A.; Mcbride, Ryan; Lamppa, Derek C.; Martin, Matthew R.; Rovang, Dean C.; Sinars, Daniel; Slutz, Stephen A.; Cuneo, Michael E.

Abstract not provided.

Computational solution verification and validation applied to a thermal model of a ruggedized instrumentation package

WIT Transactions on Modelling and Simulation

Scott, Sarah N.; Templeton, J.A.; Ruthruff, Joseph; Hough, Patricia D.; Peterson, Jerrod P.

This study details a methodology for quantification of errors and uncertainties of a finite element heat transfer model applied to a Ruggedized Instrumentation Package (RIP). The proposed verification and validation (V&V) process includes solution verification to examine errors associated with the code's solution techniques, and model validation to assess the model's predictive capability for quantities of interest. The model was subjected to mesh resolution and numerical parameters sensitivity studies to determine reasonable parameter values and to understand how they change the overall model response and performance criteria. To facilitate quantification of the uncertainty associated with the mesh, automatic meshing and mesh refining/coarsening algorithms were created and implemented on the complex geometry of the RIP. Automated software to vary model inputs was also developed to determine the solution’s sensitivity to numerical and physical parameters. The model was compared with an experiment to demonstrate its accuracy and determine the importance of both modelled and unmodelled physics in quantifying the results' uncertainty. An emphasis is placed on automating the V&V process to enable uncertainty quantification within tight development schedules.

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An adaptive shifted power method for computing generalized tensor eigenpairs

SIAM Journal on Matrix Analysis and Applications

Kolda, Tamara G.; Mayo, Jackson R.

Several tensor eigenpair definitions have been put forth in the past decade, but these can all be unified under generalized tensor eigenpair framework, introduced by Chang, Pearson, and Zhang [J. Math. Anal. Appl., 350 (2009), pp. 416-422]. Given mth-order, n-dimensional realvalued symmetric tensors A and B, the goal is to find λ ε ℝ and x ε ℝn, x ≠= 0 such that Axm-1 = λBxm-1. Different choices for B yield different versions of the tensor eigenvalue problem. We present our generalized eigenproblem adaptive power (GEAP) method for solving the problem, which is an extension of the shifted symmetric higher-order power method (SS-HOPM) for finding Z-eigenpairs. A major drawback of SS-HOPM is that its performance depended on choosing an appropriate shift, but our GEAP method also includes an adaptive method for choosing the shift automatically.

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Precision laser annealing of silicon devices for enhanced electro-optic performance

Proceedings of SPIE - The International Society for Optical Engineering

Derose, Christopher; Starbuck, Andrew L.; Verley, Jason C.; Jenkins, Mark W.

We present results from laser annealing experiments in Si using a passively Q-switched Nd:YAG microlaser. Exposure with laser at fluence values above the damage threshold of commercially available photodiodes results in electrical damage (as measured by an increase in photodiode dark current). We show that increasing the laser fluence to values in excess of the damage threshold can result in annealing of a damage site and a reduction in detector dark current by as much as 100x in some cases. A still further increase in fluence results in irreparable damage. Thus we demonstrate the presence of a laser annealing window over which performance of damaged detectors can be at least partially reconstituted. Moreover dark current reduction is observed over the entire operating range of the diode indicating that device performance has been improved for all values of reverse bias voltage. Additionally, we will present results of laser annealing in Si waveguides. By exposing a small (<10 um) length of a Si waveguide to an annealing laser pulse, the longitudinal phase of light acquired in propagating through the waveguide can be modified with high precision, <15 milliradian per laser pulse. Phase tuning by 180 degrees is exhibited with multiple exposures to one arm of a Mach-Zehnder interferometer at fluence values below the morphological damage threshold of an etched Si waveguide. No reduction in optical transmission at 1550 nm was found after 220 annealing laser shots. © 2014 SPIE.

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Precision alignment of integrated optics in surface electrode ion traps for quantum information processing

Proceedings of SPIE - The International Society for Optical Engineering

Young, Amber L.; Hunker, J.D.; Ellis, A.R.; Samora, Sally; Wendt, Joel R.; Stick, Daniel L.

The integration of optics for efficient light delivery and the collection of fluorescence from trapped ions in surface electrode ion traps is a key component to achieving scalability for quantum information processing. Diffractive optical elements (DOEs) present a promising approach as compared to bulk optics because of their small physical profile and their flexibility in tailoring the optical wavefront. The precise alignment of the optics for coupling fluorescence to and from the ions, however, poses a particular challenge. Excitation and manipulation of the ions requires a high degree of optical access, significantly restricting the area available for mounting components. The ion traps, DOEs, and other components are compact, constraining the manipulation of various elements. For efficient fluorescence collection from the ions the DOE must be have a large numerical aperture (NA), which results in greater sensitivity to misalignment. The ion traps are sensitive devices, a mechanical approach to alignment such as contacting the trap and using precision motors to back-off a set distance not only cannot achieve the desired alignment precision, but risks damage to the ion trap. We have developed a non-contact precision optical alignment technique. We use line foci produced by off-axis linear Fresnel zone plates (FZPs) projected on alignment targets etched in the top metal layer of the ion trap and demonstrate micron-level alignment accuracy. © 2014 SPIE.

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Application of plasmonic subwavelength structuring to enhance infrared detection

Proceedings of SPIE - The International Society for Optical Engineering

Davids, Paul; Kim, Jin K.; Leonhardt, Darin; Beechem, Thomas E.; Howell, Stephen W.; Ohta, Taisuke; Wendt, Joel R.; Montoya, John A.

Nanoantennas are an enabling technology for visible to terahertz components and may be used with a variety of detector materials. We have integrated subwavelength patterned metal nanoantennas with various detector materials for infrared detection: midwave infrared indium gallium arsenide antimonide detectors, longwave infrared graphene detectors, and shortwave infrared germanium detectors. Nanoantennas offer a means to make infrared detectors much thinner, thus lowering the dark current and improving performance. The nanoantenna converts incoming plane waves to more tightly bound and concentrated surface waves. The active material only needs to extend as far as these bound fields. In the case of graphene detectors, which are only one or two atomic layers thick, such field concentration is a necessity for usable device performance, as single pass absorption is insufficient. The nanoantenna is thus the enabling component of these thin devices. However nanoantenna integration and fabrication vary considerably across these platforms as do the considerations taken into account during design. Here we discuss the motivation for these devices and show examples for the three material systems. Characterization results are included for the midwave infrared detector. © 2014 SPIE.

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Reconstructing forces from continuous connections using SWAT

Conference Proceedings of the Society for Experimental Mechanics Series

Schoenherr, Tyler F.

During an environment, it is desirable to know the forces or inputs on the system of interest. With the inputs, one can directly use a finite element or experimental model to predict responses not measured in a field test. One can attempt to measure point forces using force gauges, however, these gauges are insufficient due to the inability to place a gauge at a forcing interface or to measure a force applied over an area. SWAT (Sum of weighted acceleration technique) is a method that uses mode shapes as a modal filter with measured accelerations and to solve the inverse problem and calculate the forces and moments on the system. This paper will examine an application where the use of a force gauge is impossible due to the external forces being applied over an area. The paper will calculate the sum of the forces and moments imparted on the system and will use a finite element model to check the plausibility of the calculated forces.

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Compressed sensing for fast electron microscopy

TMS Annual Meeting

Anderson, Hyrum A.; Wheeler, Jason; Larson, Kurt

Scanning electron microscopes (SEMs) are used in neuroscience and materials science to image square centimeters of sample area at nanometer scales. Since imaging rates are in large part SNR-limited. imaging time is proportional to the number of measurements taken of each sample; in a traditional SEM. large collections can lead to weeks of around-the-clock imaging time. We previously reported a single-beam sparse sampling approach that we have demonstrated on an operational SEM for collecting "smooth" images. In this paper, we analyze how measurements from a hypothetical multi-beam system would compare to the single-beam approach in a compressed sensing framework. To that end. multi-beam measurements are synthesized on a single-beam SEM. and fidelity of reconstructed images are compared to the previously demonstrated approach. Since taking fewer measurements comes at the cost of reduced SNR, image fidelity as a function of undersampling ratio is reported.

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Transmission of THz pulses through 3μm apertures: Applications for near-field microscopy

Optics InfoBase Conference Papers

Macfaden, Alexander J.; Reno, John L.; Brener, Igal; Mitrofanov, Oleg

We demonstrate that THz pulses transmitted through small apertures (~λ/100) exhibit strong evanescent components within 1μm of the aperture. Using this effect, we developed subwavelength aperture THz near-field probes that provide 3μm resolution. © 2014 OSA.

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Multispectral sorter for rapid, nondestructive optical bioprospecting for algae biofuels

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Davis, Ryan W.; Wu, Hauwen; Singh, Seema S.

Microalgal biotechnology is a nascent yet burgeoning field for developing the next generation of sustainable feeds, fuels, and specialty chemicals. Among the issues facing the algae bioproducts industry, the lack of efficient means of cultivar screening and phenotype selection represents a critical hurdle for rapid development and diversification. To address this challenge, we have developed a multi-modal and label-free optical tool which simultaneously assesses the photosynthetic productivity and biochemical composition of single microalgal cells, and provides a means for actively sorting attractive specimen (bioprospecting) based on the spectral readout. The device integrates laser-trapping micro-Raman spectroscopy and pulse amplitude modulated (PAM) fluorometry of microalgal cells in a flow cell. Specifically, the instrument employs a dual-purpose epi-configured IR laser for single-cell trapping and Raman spectroscopy, and a high-intensity VISNIR trans-illumination LED bank for detection of variable photosystem II (PSII) fluorescence. Micro-Raman scatter of single algae cells revealed vibrational modes corresponding to the speciation and total lipid content, as well as other major biochemical pools, including total protein, carbohydrates, and carotenoids. PSII fluorescence dynamics provide a quantitative estimate of maximum photosynthetic efficiency and regulated and non-regulated non-photochemical quenching processes. The combined spectroscopic readouts provide a set of metrics for subsequent optical sorting of the cells by the laser trap for desirable biomass properties, e.g. the combination of high lipid productivity and high photosynthetic yield. Thus the device provides means for rapid evaluation and sorting of algae cultures and environmental samples for biofuels development. © 2014 SPIE.

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Gallium nitride nanowire distributed feedback lasers

Conference on Lasers and Electro-Optics Europe - Technical Digest

Wright, Jeremy B.; Campione, Salvatore; Liu, Sheng; Martinez, Julio A.; Xu, Huiwen; Luk, Ting S.; Li, Qiming; Wang, George T.; Swartzentruber, Brian; Brener, Igal

We have demonstrated single-mode lasing in a single gallium nitride nanowire using distributed feedback by external coupling to a dielectric grating. By adjusting the nanowire grating alignment we achieved a mode suppression ratio of 17dB.

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Results 54401–54500 of 99,299
Results 54401–54500 of 99,299