Traditional point-to-point communication sends data only after the entirety of the data is available. This includes situations where multiple actors (e.g., threads) contribute to the send buffer. As a result, cases where the completion times of these actors are widely distributed may be lost opportunities for optimization because data ready to be sent is waiting to be transmitted. Fine-grained communication exposes these opportunities by allowing buffers to be divided into elements that can then be sent independently (see e.g., Partitioned Communication in Message Passing Interface v4.0). While some research has been directed at exploring the utility of such 'early-bird' transmission, the overall search space for finding the best performing actor completion timings and element counts is large. In this work, we present an abstract model of fine-grained communication based on the LogGP model and a complementary benchmark. We use the model to explore actor completion timing scenarios and identify trends in communication behavior based on factors such as overall message size and delay between actor completions. We evaluate the benchmarks on three systems utilizing distinct network technologies and show that: (i) smaller numbers of elements are able to exploit most of the benefit of early-bird communication, (ii) performance benefit will depend non-trivially on application behavior, and (iii) benefits are highly network-dependent.
Early-bird communication is a communication/computation overlap technique that combines fine-grained communication with partitioned communication to improve application run-time. Communication is divided among the compute threads such that each individual thread can initiate transmission of its portion of the data as soon as it is complete rather than waiting for all of the threads. However, the benefit of early-bird communication depends on the completion timing of the individual threads. In this paper, we measure and evaluate the potential overlap, the idle time each thread experiences between finishing their computation and the final thread finishing. These measurements help us understand whether a given application could benefit from early-bird communication. We present our technique for gathering this data and evaluate data collected from three proxy applications: MiniFE, MiniMD, and MiniQMC. To characterize the behavior of these workloads, we study the thread timings at both a macro level, i.e., across all threads across all runs of an application, and a micro level, i.e., within a single process of a single run. We observe that these applications exhibit significantly different behavior. While MiniFE and MiniQMC appear to be well-suited for early-bird communication because of their wider thread distribution and more frequent laggard threads, the behavior of MiniMD may limit its ability to leverage early-bird communication.
The plastic deformation of metals is a dissipative process. Some fraction of the plastic work is converted to heat which, given the temperature dependent response of metals, produces a thermal-mechanical coupling. In various cases, for instance when the loading is dynamic, this interaction can impact the resulting response of a material and/or system. Thus, appropriately capturing the heat generation from plastic work is necessary for various solid mechanics analysis. Determination of the fraction of work converted to heat has been long studied. Recent developments have demonstrated that the fraction is not constant but depends on various state variables. Resolving these features requires combined modeling and experimental studies. To this end, 304L stainless steel – a poor thermal conductor – was recently subjected to such an investigation. Advanced modeling capabilities were deployed to assess novel thermomechanically coupled experiments. As a complement to that study, in the current work a similar investigation is performed on copper – a good thermal conductor – to assess performance on the opposite end of the spectrum. The current document discusses these modeling efforts.
Metamaterial resonators have become an efficient and versatile platform in the terahertz frequency range, finding applications in integrated optical devices, such as active modulators and detectors, and in fundamental research, e.g., ultrastrong light–matter investigations. Despite their growing use, characterization of modes supported by these subwavelength elements has proven to be challenging and it still relies on indirect observation of the collective far-field transmission/reflection properties of resonator arrays. Here, we present a broadband time-domain spectroscopic investigation of individual metamaterial resonators via a THz aperture scanning near-field microscope (a-SNOM). The time-domain a-SNOM allows the mapping and quantitative analysis of strongly confined modes supported by the resonators. In particular, a cross-polarized configuration presented here allows an investigation of weakly radiative modes. These results hold great potential to advance future metamaterial-based optoelectronic platforms for fundamental research in THz photonics.
UV photofragment spectroscopy and IR-UV double resonance methods are used to determine the structure and spectroscopic responses of a three-dimensional [2.2.2]-benzocryptand cage to the incorporation of a single K+ or Ba2+ imbedded inside it (labeled as K+-BzCrypt, Ba2+-BzCrypt). We studied the isolated ion-cryptand complex under cryo-cooled conditions, brought into the gas phase by nano-electrospray ionization. Incorporation of a phenyl ring in place of the central ethyl group in one of the three N-CH2-CH2-O-CH2-CH2-O-CH2-CH2-N chains provides a UV chromophore whose S0-S1 transition we probe. K+-BzCrypt and Ba2+-BzCrypt have their S0-S1 origin transitions at 35,925 and 36,446 cm-1, respectively, blue-shifted by 174 and 695 cm-1 from that of 1,2-dimethoxybenzene. These origins are used to excite a single conformation of each complex selectively and record their IR spectra using IR-UV dip spectroscopy. The alkyl CH stretch region (2800-3000 cm-1) is surprisingly sensitive to the presence and nature of the encapsulated ion. We carried out an exhaustive conformational search of cage conformations for K+-BzCrypt and Ba2+-BzCrypt, identifying two conformations (A and B) that lie below all others in energy. We extend our local mode anharmonic model of the CH stretch region to these strongly bound ion-cage complexes to predict conformation-specific alkyl CH stretch spectra, obtaining quantitative agreement with experiment for conformer A, the gas-phase global minimum. The large electrostatic effect of the charge on the O- and N-lone pairs affects the local mode frequencies of the CH2 groups adjacent to these atoms. The localized CH2 scissors modes are pushed up in frequency by the adjacent O/N-atoms so that their overtones have little effect on the alkyl CH stretch region. However, the localized CH2 wags are nearly degenerate and strongly coupled to one another, producing an array of delocalized wag normal modes, whose highest frequency members reach up above 1400 cm-1. As such, their overtones mix significantly with the CH stretch modes, most notably involving the CH2 symmetric stretch fundamentals of the central ethyl groups in the all-alkyl chains and the CH stretches adjacent to the N-atoms and antiperiplanar to the nitrogen lone pair.
Garcia, Valentina; Pidatala, Venkataramana; Barcelos, Carolina A.; Liu, Dupeng; Otoupal, Peter; Wendt, Oliver; Choudhary, Hemant; Sun, Ning; Eudes, Aymerick; Sundstrom, Eric R.; Scheller, Henrik V.; Putnam, Daniel H.; Mukhopadhyay, Aindrila; Gladden, John M.; Simmons, Blake A.; Rodriguez Ruiz, Jose A.
Building a stronger bioeconomy requires production capabilities that are largely generated through microbial genetic engineering. Plant feedstocks can additionally be genetically engineered to generate desirable feedstock traits and provide precursors for direct microbial conversion into desired products. The oleaginous yeast Rhodosporidium toruloides is a promising organism for this type of conversion as it can grow on a wide range of deconstructed biomass and consume a variety of carbon sources. Here, we leveraged R. toruloides native p-coumaric acid consumption pathway to accumulate protocatechuate (PCA) from 4-hydroxybenzoate (4HBA) released from a sorghum feedstock line genetically engineered to overproduce 4HBA. We did so by generating and evaluating an R. toruloides strain that accumulates PCA, RSΔ12623. We then show that at two scales a cholinium lysinate pretreatment with enzymatic saccharification successfully extracts 95% of the 4HBA from the engineered sorghum biomass while producing deconstructed lignin that can be more efficiently depolymerized in a subsequent thermochemical reaction. We also demonstrate that strain RSΔ12623 can convert more than 95% of 4HBA to PCA while consuming >95% of the glucose and >80% of the xylose present in sorghum hydrolysates. Finally, to evaluate the scalability of such fermentations, we conducted the conversion of 4HBA to PCA in a 2 L bioreactor under controlled conditions. This work demonstrates the potential of purposefully producing aromatic precursors in planta that can be liberated during biomass deconstruction for direct microbial conversion to desirable bioproducts.
Thermal-Hydrologic (TH) modeling of DECOVALEX 2023, Task C has continued in FY23. This report summarizes progress in TH modeling of Step 1c, with calibration modeling and the addition of shotcrete. The work involves 3-D modeling of the full-scale emplacement experiment at the Mont Terri Underground Rock Laboratory (Nagra, 2019). While Step 1 is focused on modeling the heating phase of the FE experiment with changes in pore pressure in the Opalinus clay resulting from heating, Step 1c is focused on calibration of models using available data.
The table presented below suggests the basic information that should be covered in a facility NMAC Plan for an NMAC program that is designed for nuclear security. The topics are appropriate for and should be addressed by all facilities in their NMAC Plans. They are appropriate for NMAC Plans for nuclear power plants, research reactors, fuel manufacturing facilities, facilities that produce medical isotopes, and other facilities. The difference is in the intensity with which the various measures are applied and the thoroughness of the description of the application (i.e., the program requirements). The robustness of a facility NMAC program and the content of its NMAC Plan should be graded in accordance with the type of facility and the category of its nuclear material.
Threaded fastener behavior can be an important aspect of complex component and system behavior, but there is no one-size-fits-all finite element analysis technique. Proper modeling of threaded fastener joints requires careful consideration of many details, from test setup and data acquisition to constitutive modeling and uncertainty quantification approaches. This report details analysis of a “mini-radax” bolted-joint exemplar where a Discrete-Direct uncertainty quantification approach is employed to evaluate margin of the component. The mini-radax geometry is tested to failure on a drop table, and single-coupon tests of individual fasteners serve as foundational data for the analysis. Analysis predictions complement the test data well and provide additional context for engineering decision-making.
Abstract: Advantages of the 2.5D HI (Heterogeneous Integration) electronics packaging of the power electronics compared to PCB packaging will be presented. Current 2.5D packaging effort using TSV (Through Silicon Via) will be presented in terms of fabrication, microstructural analysis, reliability, and thermal simulation.
In this paper, we highlight how computational properties of biological dendrites can be leveraged for neuromorphic applications. Specifically, we demonstrate analog silicon dendrites that support multiplication mediated by conductance-based input in an interception model inspired by the biological dragonfly. We also demonstrate spatiotemporal pattern recognition and direction selectivity using dendrites on the Loihi neuromorphic platform. These dendritic circuits can be assembled hierarchically as building blocks for classifying complex spatiotemporal patterns.
Dannemann Dugick, Fransiska; Bishop, Jordan W.; Martire, Leo; Iezzi, Alexandra M.; Assink, Jelle D.; Brissaud, Quentin; Arrowsmith, Stephen
This special section of the Bulletin of the Seismological Society of America provides a broad overview on recent advances to the understanding of the seismoacoustic wavefield through 19 articles. Leveraging multiphenomenology datasets is instrumental for the continued success of future planetary missions, nuclear test ban treaty verification, and natural hazard monitoring. Progress in our theoretical understanding of mechanical coupling, advancements in coupled-media wave modeling, and developments of efficient multitechnology inversion procedures are key to fully exploiting geophysical datasets on Earth and beyond. We begin by highlighting papers describing experimental setups and instrumentation, followed by characterization of natural and anthropogenic sources of interest, and ending in new open-access datasets. Finally, we conclude with an overview of challenges that remain as well as some potential directions for future investigation within the growing multidisciplinary field of seismoacoustics.
Dominic D’Onofrio is currently a Junior studying Information and Technology at New Mexico Institute of Mining and Technology. He recently secured an Internship with NMCCoE, where he is involved with the TracerFIRE 12 project. Additionally, he is contributing to the load and security testing team by researching ways to implement pipelining and DevSecOps; this is his main project while he is at part time capacity for TracerFIRE 12. He is doing these projects to enhance his knowledge as a system administrator and gain a deeper understating of cybersecurity practices within national labs.
Waveform cross-correlation is a sensitive phase-matched filtering technique that can detect seismic events for nuclear explosion monitoring. However, there are outstanding challenges with correlation detectors, most notably a direct dependence on the completeness of the waveform template library. To ameliorate these challenges, we investigate how dynamic time warping (DTW) may make waveform correlation more robust. DTW analyzes the differences between two time series and attempts to “warp” one time series relative to another in a recursive manner. We apply DTW to synthetic earthquake and recorded explosion templates to expand the capability of correlation detectors. We explore what conditions (e.g., source, station distance, frequency bands) and/or DTW algorithms generate stronger correlation scores. We show that DTW performs well on noisy signals and can dramatically improve the cross-correlation coefficient between a template and data-stream waveform. We conclude with recommendations on how to utilize DTW in nuclear monitoring detection.
The growth of helium bubbles impacts structural integrity of materials in nuclear applications. Understanding helium bubble nucleation and growth mechanisms is critical for improved material applications and aging predictions. Systematic molecular dynamics simulations have been performed to study helium bubble nucleation and growth mechanisms in Fe70Ni11Cr19 stainless steels. First, helium cluster diffusivities are calculated at a variety of helium cluster sizes and temperatures for systems with and without dislocations. Second, the process of diffusion of helium atoms to join existing helium bubbles is not deterministic and is hence studied using ensemble simulations for systems with and without vacancies, interstitials, and dislocations. We find that bubble nucleation depends on diffusion of not only single helium atoms, but also small helium clusters. Defects such as vacancies and dislocations can significantly impact the diffusion kinetics due to the trapping effects. Vacancies always increase the time for helium atoms to join existing bubbles due to the short-range trapping effect. This promotes bubble nucleation as opposed to bubble growth. Interestingly, dislocations can create a long-range trapping effect that reduces the time for helium atoms to join existing bubbles. This can promote bubble growth within a certain region near dislocations.
In many areas of constrained optimization, representing all possible constraints that give rise to an accurate feasible region can be difficult and computationally prohibitive for online use. Satisfying feasibility constraints becomes more challenging in high-dimensional, non-convex regimes which are common in engineering applications. A prominent example that is explored in the manuscript is the security-constrained optimal power flow (SCOPF) problem, which minimizes power generation costs, while enforcing system feasibility under contingency failures in the transmission network. In its full form, this problem has been modeled as a nonlinear two-stage stochastic programming problem. In this work, we propose a hybrid structure that incorporates and takes advantage of both a high-fidelity physical model and fast machine learning surrogates. Neural network (NN) models have been shown to classify highly non-linear functions and can be trained offline but require large training sets. In this work, we present how model-guided sampling can efficiently create datasets that are highly informative to a NN classifier for non-convex functions. We show how the resultant NN surrogates can be integrated into a non-linear program as smooth, continuous functions to simultaneously optimize the objective function and enforce feasibility using existing non-linear solvers. Overall, this allows us to optimize instances of the SCOPF problem with an order of magnitude CPU improvement over existing methods.
An x-ray imaging scheme using spherically bent crystals was implemented on the Z-machine to image x rays emitted by the hot, dense plasma generated by a Magnetized Liner Inertial Fusion (MagLIF) target. This diagnostic relies on a spherically bent crystal to capture x-ray emission over a narrow spectral range (<15 eV), which is established by a limiting aperture placed on the Rowland circle. The spherical crystal optic provides the necessary high-throughput and large field-of-view required to produce a bright image over the entire, one-cm length of the emitting column of a plasma. The average spatial resolution was measured and determined to be 18 µm for the highest resolution configuration. With this resolution, the radial size of the stagnation column can be accurately determined and radial structures, such as bifurcations in the column, are clearly resolved. The success of the spherical-crystal imager has motivated the implementation of a new, two-crystal configuration for identifying sources of spectral line emission using a differential imaging technique.
Nuclear power plants (NPPs) are considering flexible plant operations to take advantage of excess thermal and electrical energy. One option for NPPs is to pursue hydrogen production through high temperature electrolysis as an alternate revenue stream to remain economically viable. The intent of this study is to investigate the risk of a hydrogen production facility in close proximity to an NPP. A 100 MW, 500 MW, and 1,000 MW facility are evaluated herein. Previous analyses have evaluated preliminary designs of a hydrogen production facility in a conservative manner to determine if it is feasible to co-locate the facility within 1 km of an NPP. This analysis specifically evaluates the risk components of different hydrogen production facility designs, including the likelihood of a leak within the system and the associated consequence to critical NPP targets. This analysis shows that although the likelihood of a leak in an HTEF is not negligible, the consequence to critical NPP targets is not expected to lead to a failure given adequate distance from the plant.
Wang, Qian; Guillaume, Joseph H.A.; Jakeman, John D.; Bennett, Frederick R.; Croke, Barry F.W.; Fu, Baihua; Yang, Tao; Jakeman, Anthony J.
Factor Fixing (FF) is a common method for reducing the number of model parameters to lower computational cost. FF typically starts with distinguishing the insensitive parameters from the sensitive and pursues uncertainty quantification (UQ) on the resulting reduced-order model, fixing each insensitive parameter at a fixed value. There is a need, however, to expand such a common approach to consider the effects of decision choices in the FF-UQ procedure on metrics of interest. Therefore, to guide the use of FF and increase confidence in the resulting dimension-reduced model, we propose a new adaptive framework consisting of four principles: (a) re-parameterize the model first to reduce obvious non-identifiable parameter combinations, (b) focus on decision relevance especially with respect to errors in quantities of interest (QoI), (c) conduct adaptive evaluation and robustness assessment of errors in the QoI across FF choices as sample size increases, and (d) reconsider whether fixing is warranted. The framework is demonstrated on a spatially-distributed water quality model. The error in estimates of QoI caused by FF can be estimated using a Polynomial Chaos Expansion (PCE) surrogate model. Built with 70 model runs, the surrogate is computationally inexpensive to evaluate and can provide global sensitivity indices for free. For the selected catchment, just two factors may provide an acceptably accurate estimate of model uncertainty in the average annual load of Total Suspended Solids (TSS), suggesting that reducing the uncertainty in these two parameters is a priority for future work before undertaking further formal uncertainty quantification.
We present a graph neural network approach that fully automates the prediction of defect formation enthalpies for any crystallographic site from the ideal crystal structure, without the need to create defected atomic structure models as input. Here we used density functional theory reference data for vacancy defects in oxides, to train a defect graph neural network (dGNN) model that replaces the density functional theory supercell relaxations otherwise required for each symmetrically unique crystal site. Interfaced with thermodynamic calculations of reduction entropies and associated free energies, the dGNN model is applied to the screening of oxides in the Materials Project database, connecting the zero-kelvin defect enthalpies to high-temperature process conditions relevant for solar thermochemical hydrogen production and other energy applications. The dGNN approach is applicable to arbitrary structures with an accuracy limited principally by the amount and diversity of the training data, and it is generalizable to other defect types and advanced graph convolution architectures. It will help to tackle future materials discovery problems in clean energy and beyond.
