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Analyzing the impact of overlap, offload, and independent progress for MPI

Proposed for publication in the International Journal of High Performance Computing Applications.

Brightwell, Ronald B.; Riesen, Rolf; Underwood, Keith

The overlap of computation and communication has long been considered to be a significant performance benefit for applications. Similarly, the ability of the Message Passing Interface (MPI) to make independent progress (that is, to make progress on outstanding communication operations while not in the MPI library) is also believed to yield performance benefits. Using an intelligent network interface to offload the work required to support overlap and independent progress is thought to be an ideal solution, but the benefits of this approach have not been studied in depth at the application level. This lack of analysis is complicated by the fact that most MPI implementations do not sufficiently support overlap or independent progress. Recent work has demonstrated a quantifiable advantage for an MPI implementation that uses offload to provide overlap and independent progress. The study is conducted on two different platforms with each having two MPI implementations (one with and one without independent progress). Thus, identical network hardware and virtually identical software stacks are used. Furthermore, one platform, ASCI Red, allows further separation of features such as overlap and offload. Thus, this paper extends previous work by further qualifying the source of the performance advantage: offload, overlap, or independent progress.

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Deconstructing Nowicki and Smutnickis i-TSAB tabu search algorithm for the job-shop scheduling problem

Proposed for publication in Computers and Operations Research.

Watson, Jean-Paul W.

Over the last decade and a half, tabu search algorithms for machine scheduling have gained a near-mythical reputation by consistently equaling or establishing state-of-the-art performance levels on a range of academic and real-world problems. Yet, despite these successes, remarkably little research has been devoted to developing an understanding of why tabu search is so effective on this problem class. In this paper, we report results that provide significant progress in this direction. We consider Nowicki and Smutnicki's i-TSAB tabu search algorithm, which represents the current state-of-the-art for the makespan-minimization form of the classical jobshop scheduling problem. Via a series of controlled experiments, we identify those components of i-TSAB that enable it to achieve state-of-the-art performance levels. In doing so, we expose a number of misconceptions regarding the behavior and/or benefits of tabu search and other local search metaheuristics for the job-shop problem. Our results also serve to focus future research, by identifying those specific directions that are most likely to yield further improvements in performance.

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Measurement and analysis of x-ray absorption in Al and MgF2 plasmas heated by Z-pinch radiation

Proposed for publication in Physical Review E.

Bailey, James E.

High-power Z pinches on Sandia National Laboratories Z facility can be used in a variety of experiments to radiatively heat samples placed some distance away from the Z-pinch plasma. In such experiments, the heating radiation spectrum is influenced by both the Z-pinch emission and the re-emission of radiation from the high-Z surfaces that make up the Z-pinch diode. To test the understanding of the amplitude and spectral distribution of the heating radiation, thin foils containing both Al and MgF{sub 2} were heated by a 100-130 TW Z pinch. The heating of these samples was studied through the ionization distribution in each material as measured by x-ray absorption spectra. The resulting plasma conditions are inferred from a least-squares comparison between the measured spectra and calculations of the Al and Mg 1s {yields} 2p absorption over a large range of temperatures and densities. These plasma conditions are then compared to radiation-hydrodynamics simulations of the sample dynamics and are found to agree within 1{sigma} to the best-fit conditions. This agreement indicates that both the driving radiation spectrum and the heating of the Al and MgF{sub 2} samples is understood within the accuracy of the spectroscopic method.

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Radiation predictions and shielding calculations for RITS-6

Maenchen, John E.; Kensek, Ronald P.; Fan, Wesley C.

The mission of Radiographic Integrated Test Stand-6 (RITS-6) facility is to provide the underlying science and technology for pulsed-power-driven flash radiographic X-ray sources for the National Nuclear Security Administration (NNSA). Flash X-ray radiography is a penetrating diagnostic to discern the internal structure in dynamic experiments. Short (~50 nanosecond (ns) duration) bursts of very high intensity Xrays from mm-scale source sizes are required at a variety of voltages to address this mission. RITS-6 was designed and is used to both develop the accelerator technology needed for these experiments and serves as the principal test stand to develop the high intensity electron beam diodes that generate the required X-ray sources. RITS is currently in operation with three induction cavities (RITS-3) with a maximum voltage output of 5.5 MV and is classified as a low hazard non-nuclear facility in accordance with CPR 400.1.1, Chapter 13, Hazards Identification/Analysis and Risk Management. The facility will be expanded from three to six cavities (RITS-6) effectively doubling the operating voltage. The increase in the operating voltage to above 10 MV has resulted in RITS-6 being classified as an accelerator facility. RITS-6 will come under DOE Order 420.2B, Safety of Accelerator Facilities. The hazards of RITS are detailed in the "Safety Assessment Document for the Radiographic Integrated Test Stand Facility." The principal non-industrial hazard is prompt x-ray radiation. As the operating voltage is increased, both the penetration power and the total amount (dose) of x-rays are increased, thereby increasing the risk to local personnel. Fixed site shielding (predominantly concrete walls and a steel/lead skyshine shield) is used to attenuate these x-rays and mitigate this risk. This SAND Report details the anticipated x-ray doses, the shielding design, and the anticipated x-ray doses external to this shielding structure both in areas where administrative access control restricts occupation and in adjacent uncontrolled areas.

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Pulse-echo ultrasonic inspection system for in-situ nondestructive inspection of Space Shuttle RCC heat shields

Roach, D.; Walkington, Phillip D.; Rackow, Kirk; Rackow, Kirk

The reinforced carbon-carbon (RCC) heat shield components on the Space Shuttle's wings must withstand harsh atmospheric reentry environments where the wing leading edge can reach temperatures of 3,000 F. Potential damage includes impact damage, micro cracks, oxidation in the silicon carbide-to-carbon-carbon layers, and interlaminar disbonds. Since accumulated damage in the thick, carbon-carbon and silicon-carbide layers of the heat shields can lead to catastrophic failure of the Shuttle's heat protection system, it was essential for NASA to institute an accurate health monitoring program. NASA's goal was to obtain turnkey inspection systems that could certify the integrity of the Shuttle heat shields prior to each mission. Because of the possibility of damaging the heat shields during removal, the NDI devices must be deployed without removing the leading edge panels from the wing. Recently, NASA selected a multi-method approach for inspecting the wing leading edge which includes eddy current, thermography, and ultrasonics. The complementary superposition of these three inspection techniques produces a rigorous Orbiter certification process that can reliably detect the array of flaws expected in the Shuttle's heat shields. Sandia Labs produced an in-situ ultrasonic inspection method while NASA Langley developed the eddy current and thermographic techniques. An extensive validation process, including blind inspections monitored by NASA officials, demonstrated the ability of these inspection systems to meet the accuracy, sensitivity, and reliability requirements. This report presents the ultrasonic NDI development process and the final hardware configuration. The work included the use of flight hardware and scrap heat shield panels to discover and overcome the obstacles associated with damage detection in the RCC material. Optimum combinations of custom ultrasonic probes and data analyses were merged with the inspection procedures needed to properly survey the heat shield panels. System features were introduced to minimize the potential for human factors errors in identifying and locating the flaws. The in-situ NDI team completed the transfer of this technology to NASA and USA employees so that they can complete 'Return-to-Flight' certification inspections on all Shuttle Orbiters prior to each launch.

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Scattering from polymer networks under elongational strain

Proposed for publication in Europhysics Letters.

Grest, Gary S.

Molecular-dynamics simulations are used to sample the single-chain form factor of labelled sub-chains in model polymer networks under elongational strain. We observe very similar results for randomly cross-linked and for randomly end-linked networks with the same average strand length and see no indication of lozenge-like scattering patterns reported for some experimental systems. Our data analysis shows that a recent variant of the tube model quantitatively describes scattering in the Guinier regime as well as the macroscopic elastic properties. The observed failure of the theory outside the Guinier regime is shown to be due to non-Gaussian pair-distance distributions.

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Multicolor light-emitting diodes based on semiconductor nanocrystals encapsulated in GaN charge injection layers

Proposed for publication in Nano Letters.

Koleske, Daniel K.

Numerous technologies including solid-state lighting, displays, and traffic signals can benefit from efficient, color-selectable light sources that are driven electrically. Semiconductor nanocrystals are attractive types of chromophores that combine size-controlled emission colors and high emission efficiencies with excellent photostability and chemical flexibility. Applications of nanocrystals in light-emitting technologies, however, have been significantly hindered by difficulties in achieving direct electrical injection of carriers. Here we report the first successful demonstration of electroluminescence from an all-inorganic, nanocrystal-based architecture in which semiconductor nanocrystals are incorporated into a p-n junction formed from GaN injection layers. The critical step in the fabrication of these nanocrystal/GaN hybrid structures is the use of a novel deposition technique, energetic neutral atom beam lithography/epitaxy, that allows for the encapsulation of nanocrystals within a GaN matrix without adversely affecting either the nanocrystal integrity or its luminescence properties. We demonstrate electroluminescence (injection efficiencies of at least 1%) in both single- and two-color regimes using structures comprising either a single monolayer or a bilayer of nanocrystals.

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Jamming in granular hopper flow

Proposed for publication in Physical Review E.

Grest, Gary S.

Large-scale three dimensional molecular dynamics simulations of hopper flow are presented. The flow rate of the system is controlled by the width of the aperture at the bottom. As the steady-state flow rate is reduced, the force distribution P(f) changes only slightly, while there is a large change in the impulse distribution P(i). In both cases, the distributions show an increase in small forces or impulses as the systems approach jamming, the opposite of that seen in previous Lennard-Jones simulations. This occurs dynamically as well for a hopper that transitions from a flowing to a jammed state over time. The final jammed P(f) is quite distinct from a poured packing P(f) in the same geometry. The change in P(i) is a much stronger indicator of the approach to jamming. The formation of a peak or plateau in P(f) at the average force is not a general feature of the approach to jamming.

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Photoinduced refractive index change and absorption bleaching in poly(methylphenylsilane) under varied atmospheres

Proposed for publication in the Journal of Physics and Chemistry of Glass.

Thomes, William J.

Polysilane materials exhibit large photo-induced refractive index changes under low incident optical fluences, making them attractive candidates for applications in which rapid patterning of photonic device structures is desired immediately prior to their use. This agile fabrication strategy for integrated photonics inherently requires that optical exposure, and associated material response, occurs in nonlaboratory environments, motivating the study of environmental conditions on the photoinduced response of the material. The present work examines the impact of atmosphere on the photosensitive response of poly(methylphenylsilane) (PMPS) thin films in terms of both photoinduced absorption change and refractive index modification. Material was subjected to UV light exposure resonant with the lowest energy optical transition associated with the conjugated Si-Si backbone. Exposures were performed in both aerobic and anaerobic atmospheres (oxygen, air, nitrogen, and 5% H{sub 2}/95% N{sub 2}). The results clearly demonstrate that the photosensitive response of this model polysilane material was dramatically affected by local environment, exhibiting a photoinduced refractive index change, when exposed under an oxygen containing atmosphere, that was twice that observed under anaerobic conditions. This effect is discussed in terms of photo-oxidation processes within the polysilane structure and in the context of the need for predictable photosensitive refractive index change in varied photoimprinting environments.

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A Cobit primer

Campbell, Philip L.

COBIT is a set of documents that provides guidance for computer security. This report introduces COBIT by answering the following questions, after first defining acronyms and presenting definitions: 1. Why is COBIT valuable? 2. What is COBIT?, and 3. What documents are related to COBIT? (The answer to the last question constitutes the bulk of this report.) This report also provides more detailed review of three documents. The first two documents--COBIT Security Baseline{trademark} and COBIT Quickstart{trademark}--are initial documents, designed to get people started. The third document-Control Practices-is a ''final'' document, so to speak, designed to take people all the way down into the details. Control Practices is the detail.

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Status of the Z Refurbishment project (ZR) at Sandia National Laboratories

Bloomquist, Douglas D.; McDaniel, Dillon H.; Weed, John W.; Faturos, Thomas V.; McKee, George R.; Tabor, Debra A.; Warner, Peggy J.

Sandia National Laboratories Z Refurbishment (ZR) Project formally began in August 2002 to increase the Z Accelerator's utilization by providing the capability to perform more shots, improve precision and pulse shape variability, increase delivered current, and accomplish the improvements with minimal disruption to Z's ongoing programs. A project overview was provided at the 14th International Pulsed Power Conference in 2003. This paper provides an update of the project including architectural changes over the past two years, timeframe for completion, and overall design and fabrication status.

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Thermodynamic and structural characterization of Mg-Li-N-H storage system

Proposed for publication in the Journal of Alloys and Compounds.

Sickafoose, Shane S.

The Mg-Li-N-H system is a very promising hydrogen storage material due to its high capacity, reversibility and moderate operating conditions. Some of thermodynamic and structural properties for this system are characterized here. Pressure-composition isotherms are measured and presented in this paper for absorption-desorption at 220, 200 and 180 C. Powder X-ray diffraction (XRD) and Fourier Transform Infrared (FTIR) analysis were carried out for samples at various degrees of hydrogenation. These results provide information about the structural changes during absorption/desorption. The mixture of (2LiNH{sub 2} + MgH{sub 2}) partially converts to (Mg(NH{sub 2}){sub 2} + 2LiH) when heated at 220 C and 100 bar of hydrogen without undergoing desorption. Based on two distinct parts which appear in all of the pressure-composition isotherms (180-220 C), two reactions taking place isothermally in hydrogen absorption/desorption are proposed for the material starting with (2LiNH{sub 2} + MgH{sub 2}) or (Mg(NH{sub 2}){sub 2} + 2LiH). These reactions include a single solid-phase reaction, corresponding to the sloping region for hydrogen weight percent (Hwt%) smaller than 1.5%, and a multiple-phase reaction, corresponding to a plateau region for Hwt.% > 1.5 in the isotherms. During hydrogen absorption/desorption, the single-solid-phase reaction corresponds to the forming/consuming of NH{sub 2} which is bonded to Li and the multiple-solid-phase reaction corresponds to forming/consuming Mg(NH{sub 2}){sub 2} and LiH. A mechanism for the sorption reactions has been proposed.

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Bone response to 3-D periodic hydroxyapatite scaffolds with and without tailored microporosity to deliver bone morphogenetic protein 2

Proposed for publication in the Journal of Biomedical Materials Research.

Cesarano, Joseph C.; Dellinger, Jennifer D.

The in vivo bone response of 3D periodic hydroxyapatite (HA) scaffolds is investigated. Two groups of HA scaffolds (11 mm diameter x 3.5 mm thick) are fabricated by direct-write assembly of a concentrated HA ink. The scaffolds consist of cylindrical rods periodically arranged into four quadrants with varying separation distances between rods. In the first group, HA rods (250 {micro}m in diameter) are patterned to create pore channels, whose areal dimensions are 250 x 250 {micro}m{sup 2} in quadrant 1, 250 x 500 {micro}m{sup 2} in quadrants 2 and 4, and 500 x 500 {micro}m{sup 2} in quadrant 3. In the second group, HA rods (400 {micro}m in diameter) are patterned to create pore channels, whose areal dimensions of 500 x 500 {micro}m{sup 2} in quadrant 1, 500 x 750 {micro}m{sup 2} in quadrants 2 and 4, and 750 x 750 {micro}m{sup 2} in quadrant 3. Each group of scaffolds is partially densified by sintering at 1200 C prior to being implanted bilaterally in trephine defects of skeletally mature New Zealand White rabbits. Their tissue response is evaluated at 8 and 16 weeks using micro-computed tomography, histology, and scanning electron microscopy. New trabecular bone is conducted rapidly and efficiently across substantial distances within these patterned 3D HA scaffolds. Our observations suggest that HA rods are first coated with a layer of new bone followed by subsequent scaffold infilling via outward and inward radial growth of the coated regions. Direct-write assembly of 3D periodic scaffolds composed of micro-porous HA rods arrayed to produce macro-pores that are size-matched to trabecular bone may represent an optimal strategy for bone repair and replacement structures.

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An extended hybrid density functional (X3LYP) with improved descriptions of van der Waals and hydrogen bonded interactions plus electronic and thermodynamic properties of molecular systems

Proposed for publication in the Journal of Chemical Physics.

Muller, Richard P.

We derive here the form for the exact exchange energy density for a density that decays with Gaussian-type behavior at long range. This functional is intermediate between the B88 and the PW91 exchange functionals. Using this modified functional to match the form expected for Gaussian densities, we propose the X3LYP extended functional. We find that X3LYP significantly outperforms Becke three parameter Lee-Yang-Parr (B3LYP) for describing van der Waals and hydrogen bond interactions, while performing slightly better than B3LYP for predicting heats of formation, ionization potentials, electron affinities, proton affinities, and total atomic energies as validated with the extended G2 set of atoms and molecules. Thus X3LYP greatly enlarges the field of applications for density functional theory. In particular the success of X3LYP in describing the water dimer (with Re and De within the error bars of the most accurate determinations) makes it an excellent candidate for predicting accurate ligand-protein and ligand-DNA interactions.

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Meccano on the nanoscale : a blueprint for making some of the worlds tiniest machines

Proposed for publication in the Australian Journal of Chemistry.

Muller, Richard P.

Molecular compounds-comprised of mechanically interlocked components-such as rotaxanes and catenanes can be designed to display readily controllable internal movements of one component with respect to the other. Since theweak noncovalent bonding interactions that contribute to the template-directed synthesis of such compounds live on between the components thereafter, they can be activated such that the components move in either a linear fashion (rotaxanes) or a rotary manner (catenanes). These molecules can be activated by switching the recognition elements off and on between components chemically, electrically, or optically, such that they perform motions reminiscent of the moving parts in macroscopic machines. This review will highlight how the emergence ofthe mechanical bond in chemistry during the last two decades has brought with it a real prospect of integrating a bottom-up approach, based on molecular design and micro- and nanofabrication, to construct molecular electronic devices that store information at very high densities using minimal power. Although most of the research reported in this review on switchable catenanes and rotaxanes has been carried out in the context of solution-phase mechanical processes, recent results demonstrate that relative mechanical movements between the components in interlocked molecules can be stimulated (a) chemically in Langmuir and Langmuir-Blodgett films, (b) electrochemically as self-assembled monolayers on gold, and (c) electronically within the settings of solid-state devices. Not only has reversible, electronically driven switching been observed in devices incorporating a bistable [2]catenane, but a crosspoint random access memory circuit has been fabricated using an amphiphilic, bistable [2]rotaxane. The experiments provide strong evidence that switchable catenanes and rotaxanes operate mechanically in a soft-matter environment and can withstand simple device-processing steps. Studies on single-walled carbon nanotubes used as one of the electrodes in molecular switch tunnel junctions have revealed that interfacial chemical interactions involving electrodes containing carbon, silicon, and oxygen are good choices when carrying out molecular electronics on the class of rotaxane- and catenane-based molecules reported in this review. This conclusion is supported by differential conductance measurements (at 4K) made with single-molecule transistors using the break-junction method. It transpires that the electronic transport properties in such devices are more sensitive to the chemical nature of the molecule-electrode contacts than the details of the molecules' electronic structure away from the contacts. This result has profound implications for molecular electronics and highlights the importance of also considering the molecules and the electrodes as an integrated system. It all adds up to an integrated systems-oriented approach to nanotechnology that finds its inspiration in the transfer of concepts like molecular recognition from the life sciences into materials science and provides a model for how, in principle, to transfer elements of traditional chemistry to technology platforms that are being developed on the nanoscale. Before there can be any serious prospect of a technology, there has to be some good, sound science in the making. Molecular electronics is very much in its infancy and, as such, it can be expected to give rise to a great deal of intellectually stimulating science before it stands half a chance of becoming a viable companion to silicon-based technology.

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Hydrogen storage in LiAlH4 : predictions of the crystal structures and reaction mechanisms of intermediate phases from quantum mechanics

Proposed for publication in the Journal of Chemical Physics.

Muller, Richard P.

We use the density functional theory and x-ray and neutron diffraction to investigate the crystal structures and reaction mechanisms of intermediate phases likely to be involved in decomposition of the potential hydrogen storage material LiAlH{sub 4}. First, we explore the decomposition mechanism of monoclinic LiAlH4 into monoclinic Li{sub 3}AlH{sub 6} plus face-centered cubic (fcc) Al and hydrogen. We find that this reaction proceeds through a five-step mechanism with an overall activation barrier of 36.9 kcal/mol. The simulated x ray and neutron diffraction patterns from LiAlH{sub 4} and Li{sub 3}AlH{sub 6} agree well with experimental data. On the other hand, the alternative decomposition of LiAlH{sub 4} into LiAlH2 plus H2 is predicted to be unstable with respect to that through Li{sub 3}AlH{sub 6}. Next, we investigate thermal decomposition of Li{sub 3}AlH{sub 6} into fcc LiH plus Al and hydrogen, occurring through a four-step mechanism with an activation barrier of 17.4 kcal/mol for the rate-limiting step. In the first and second steps, two Li atoms accept two H atoms from AlH{sub 6} to form the stable Li-H-Li-H complex. Then, two sequential H2 desorption steps are followed, which eventually result in fcc LiH plus fcc Al and hydrogen: Li{sub 3}AlH{sub 6}(monoclinic) {yields} 3 LiH(fcc) + Al(fcc) + 3/2 H{sub 2} is endothermic by 15.8 kcal/mol. The dissociation energy of 15.8 kcal/mol per formula unit compares to experimental enthalpies in the range of 9.8-23.9 kcal/mol. Finally, we explore thermal decomposition of LiH, LiH(s) + Al(s) {yields} LiAl(s) + 1/2 H{sub 2}(g) is endothermic by 4.6 kcal/mol. The B32 phase, which we predict as the lowest energy structure for LiAl, shows covalent bond characters in the Al-Al direction. Additionally, we determine that transformation of LiH plus Al into LiAlH is unstable with respect to transformation of LiH through LiAl.

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Effect of deformation path sequence on the behavior of nanoscale copper bicrystal interfaces

Proposed for publication in the Journal of Engineering Materials and Technology.

Plimpton, Steven J.

Molecular dynamics calculations are performed to study the effect of deformation sequence and history on the inelastic behavior of copper interfaces on the nanoscale. An asymmetric 45 deg tilt bicrystal interface is examined, representing an idealized high-angle grain boundary interface. The interface model is subjected to three different deformation paths: tension then shear, shear then tension, and combined proportional tension and shear. Analysis shows that path-history dependent material behavior is confined within a finite layer of deformation around the bicrystal interface. The relationships between length scale and interface properties, such as the thickness of the path-history dependent layer and the interface strength, are discussed in detail.

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Nonlinear magnetohydrodynamics simulation using high-order finite elements

Proposed for publication in the Journal of Computational Physics.

Plimpton, Steven J.

A conforming representation composed of 2D finite elements and finite Fourier series is applied to 3D nonlinear non-ideal magnetohydrodynamics using a semi-implicit time-advance. The self-adjoint semi-implicit operator and variational approach to spatial discretization are synergistic and enable simulation in the extremely stiff conditions found in high temperature plasmas without sacrificing the geometric flexibility needed for modeling laboratory experiments. Growth rates for resistive tearing modes with experimentally relevant Lundquist number are computed accurately with time-steps that are large with respect to the global Alfven time and moderate spatial resolution when the finite elements have basis functions of polynomial degree (p) two or larger. An error diffusion method controls the generation of magnetic divergence error. Convergence studies show that this approach is effective for continuous basis functions with p {ge} 2, where the number of test functions for the divergence control terms is less than the number of degrees of freedom in the expansion for vector fields. Anisotropic thermal conduction at realistic ratios of parallel to perpendicular conductivity (x{parallel}/x{perpendicular}) is computed accurately with p {ge} 3 without mesh alignment. A simulation of tearing-mode evolution for a shaped toroidal tokamak equilibrium demonstrates the effectiveness of the algorithm in nonlinear conditions, and its results are used to verify the accuracy of the numerical anisotropic thermal conduction in 3D magnetic topologies.

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High-field electron transport in AlGaN/GaN heterostructures

Proposed for publication in Physica Status Solidi.

Koleske, Daniel K.; Allerman, A.A.; Shul, Randy J.

Experimental studies have been performed on the velocity-field characteristics of AlGaN/GaN heterostructures. A pulsed voltage input in combination with a four-point measurement was used in a 50 {Omega} environment to determinethe drift velocity of electrons in the two-dimensional electron gas as a function of the applied electric field. These measurements show an apparent saturation velocity near 3.1 x 10{sub 7} cm/s, at a field of 140 kV/cm. A comparison of these studies shows that the experimental velocities are close to previously published simulations based upon Monte Carlo techniques.

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Plasma non-uniformities induced by dissimilar electrode

Proposed for publication in the Journal of Applied Physics.

Barnat, Edward V.; Hebner, Gregory A.

Nonuniformities in both sheath electric field and plasma excitation were observed around dissimilar metals placed on a rf electrode. Spatial maps of the rf sheath electric field obtained by laser-induced fluorescence-dip (LIF-dip) spectroscopy show that the sheath structure was a function of the electrode metal. In addition to the electric-field measurements, LIF, optical emission, and Langmuir probe measurements show nonuniform excitation around the dissimilar metals. The degree and spatial extent of the discharge nonuniformities were dependent on discharge conditions and the history of the metal surfaces.

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Mechanism of the Stoddart-Heath bistable rotaxane molecular switch

Proposed for publication in the Journal of the American Chemical Society.

Muller, Richard P.

We use quantum mechanics to characterize the structure and current-voltage performance of the Stoddart-Heath rotaxane-based programmable electronic switch. We find that the current when the ring is on the DNP is 37?58 times the current when the ring is on the TTF, in agreement with experiment (ratio of 10?100). This establishes the basis for iterative experimental?theoretical efforts to optimize systems for molecule-based electronics which we illustrate by predicting the effect of adding a group such as CN to the rotaxane.

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Mechanism of homogeneous Ir(III) catalyzed regioselective arylation of olefins

Proposed for publication in the Journal of the American Chemical Society.

Muller, Richard P.

The mechanism of hydroarylation of olefins by a homogeneous Ph-Ir(acac){sub 2}(L) catalyst is elucidated by first principles quantum mechanical methods (DFT), with particular emphasis on activation of the catalyst, catalytic cycle, and interpretation of experimental observations. On the basis of this mechanism, we suggest new catalysts expected to have improved activity. Initiation of the catalyst from the inert trans-form into the active cis-form occurs through a dissociative pathway with a calculated {Delta}H(0 K){sub {+-}} = 35.1 kcal/mol and {Delta}G(298 K){sub {+-}} = 26.1 kcal/mol. The catalytic cycle features two key steps, 1,2-olefin insertion and C?H activation via a novel mechanism, oxidative hydrogen migration. The olefin insertion is found to be rate determining, with a calculated {Delta}H(0 K){sub {+-}} = 27.0 kcal/mol and {Delta}G(298 K){sub {+-}} = 29.3 kcal/mol. The activation energy increases with increased electron density on the coordinating olefin, as well as increased electron-donating character in the ligand system. The regioselectivity is shown to depend on the electronic and steric characteristics of the olefin, with steric bulk and electron withdrawing character favoring linear product formation. Activation of the C?H bond occurs in a concerted fashion through a novel transition structure best described as an oxidative hydrogen migration. The character of the transition structure is seven coordinate Ir{sup V}, with a full bond formed between the migrating hydrogen and iridium. Several experimental observations are investigated and explained: (a) The nature of L influences the rate of the reaction through a ground-state effect. (b) The lack of {beta}-hydride products is due to kinetic factors, although {beta}-hydride elimination is calculated to be facile, all further reactions are kinetically inaccessible. (c) Inhibition by excess olefin is caused by competitive binding of olefin and aryl starting materials during the catalytic cycle in a statistical fashion. On the basis of this insertion-oxidative hydrogen transfer mechanism we suggest that electron-withdrawing substituents on the acac ligands, such as trifluoromethyl groups, are good modifications for catalysts with higher activity.

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Finite element methods for nonlinear acoustics in fluids

Proposed for publication in the Journal of Computational Acoustics.

Walsh, Timothy W.

In this paper, weak formulations and finite element discretizations of the governing partial differential equations of three-dimensional nonlinear acoustics in absorbing fluids are presented. The fluid equations are considered in an Eulerian framework, rather than a displacement framework, since in the latter case the corresponding finite element formulations suffer from spurious modes and numerical instabilities. When taken with the governing partial differential equations of a solid body and the continuity conditions, a coupled formulation is derived. The change in solid/fluid interface conditions when going from a linear acoustic fluid to a nonlinear acoustic fluid is demonstrated. Finite element discretizations of the coupled problem are then derived, and verification examples are presented that demonstrate the correctness of the implementations. We demonstrate that the time step size necessary to resolve the wave decreases as steepening occurs. Finally, simulation results are presented on a resonating acoustic cavity, and a coupled elastic/acoustic system consisting of a fluid-filled spherical tank.

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Calculations and measurements of contact resistance of semi-transparent Ni/Pd contacts to p-GaN

Proposed for publication in the Journal of Electronic Materials.

Bogart, Katherine B.

Calculations of specific contact resistance as a function of doping and barrier height were performed for p-type GaN. These calculations took into account two valence bands, each with different effective masses, and show that at low doping, the heavy hole band accounts for most of the conduction, whereas at heavier doping, the light hole band dominates conduction. These calculations also indicate the barrier height for typical contacts to p-GaN is between 0.75 eV and 1 eV. Specific contact resistance measurements were made for oxidized Ni/Au, Pd, and oxidized Ni/Pd ohmic contact metal schemes to p-GaN. The Ni/Pd contact had the lowest specific contact resistance, 6 x 10{sup -4} {Omega} cm{sup 2}. Auger sputter depth profile analysis showed some Ni diffused away from the GaN surface to the contact surface with the bulk of the Pd located in between two areas of Ni. Both Ni and Pd interdiffused with the GaN at the semiconductor surface. The majority of the oxygen observed was with the Ni as NiO. Angle-resolved-x-ray photoelectron spectroscopy (AR-XPS) analyses showed the formation of predominantly NiO and PdO species, with higher Ni and Pd oxides at the contact surface.

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Molecular dynamics simulation of uranyl(VI) sorption equilibria onto an external montmorillonite surface

Proposed for publication in Physical Chemistry Chemical Physics.

Greathouse, Jeffery A.; Cygan, Randall T.

We used molecular dynamics simulations to study the adsorption of aqueous uranyl species (UO22+) onto clay mineral surfaces in the presence of sodium counterions and carbonato ligands. The large system size (10 000 atoms) and long simulation times (10 ns) allowed us to investigate the thermodynamics of ion adsorption, and the atomistic detail provided clues for the observed adsorption behavior. The model system consisted of the basal surface of a low-charge Na-montmorillonite clay in contact with aqueous uranyl carbonate solutions with concentrations of 0.027 M, 0.081 M, and 0.162 M. Periodic boundary conditions were used in the simulations to better represent an aqueous solution interacting with an external clay surface. Uranyl adsorption tendency was found to decrease as the aqueous uranyl carbonate concentration was increased, while sodium adsorption remained constant. The observed behavior is explained by physical and chemical effects. As the ionic strength of the aqueous solution was increased, electrostatic factors prevented further uranyl adsorption once the surface charge had been neutralized. Additionally, the formation of aqueous uranyl carbonate complexes, including uranyl carbonato oligomers, contributed to the decreased uranyl adsorption tendency.

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The effect of embedded Pb on Cu diffusion on Pb/Cu(111) surface alloys

Proposed for publication in Surface Science.

Dyck, Meredith L.; Bartelt, Norman C.; Feibelman, Peter J.; Swartzentruber, Brian S.; Kellogg, Gary L.

We have used scanning tunneling microscopy and low-energy electron microscopy to measure the thermal decay of two-dimensional Cu, Pb-overlayer, and Pb-Cu alloy islands on Pb-Cu(1 1 1) surface alloys. Decay rates covering 6-7 orders of magnitude are accessible by applying the two techniques to the same system. We find that Cu adatom diffusion across the surface alloy is rate-limiting for the decay of both Pb and Pb-Cu islands on the surface alloy and that this rate decreases monotonically with increasing Pb concentration in the alloy. The decrease is attributed to repulsive interactions between Cu adatoms and embedded Pb atoms in the surface alloy. The measured temperature dependences of island decay rates are consistent with first-principles calculations of the Cu binding and diffusion energies related to this 'site-blocking' effect.

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Ab initio rigid water : effect on water geometry, ion hydration, and thermodynamics

Proposed for publication in Physical Chemistry Chemical Physics (PCCP).

Rempe, Susan R.

We investigate the liquid structure, ion hydration, and some thermodynamic properties associated with the rigid geometry approximation to water by applying ab initio molecular dynamics simulations (AIMD) with the Perdew-Burke-Ernzerhof (PBE) exchange-correlation functional at T = 320 K. We vary the rigid water geometry in order to locate a class of practical water models that yield reasonable liquid structure and dynamics, and to examine the progression of AIMD-predicted water behavior as the OH bond length varies. Water constrained at the optimal PBE gas phase geometry yields reasonable pair correlation functions. The predicted liquid phase pressure, however, is large ({approx}8.0 kbar). Although the O-H bond in water should elongate when transferred from gas to the condensed phase, when it is constrained to 0.02, or even just 0.01 {angstrom} longer than the optimal gas phase value, liquid water is predicted to be substantially overstructured compared to experiments. Zero temperature calculations of the thermodynamic properties of cubic ice underscore the sensitivity toward small variations in the O-H bond length. We examine the hydration structures of potassium, chloride, and formate ions in one rigid PBE water model. The results are in reasonable agreement with unconstrained AIMD simulations.

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Evaluation of microbial activity for long-term performance assessments of deep geologic nuclear waste repositories

Proposed for publication in the ASR'2004 Proceeding in Japan.

Wang, Yifeng

Microorganisms are ubiquitous in subsurface environments and play a major role in the biogeochemical recycling of various elements. In this paper, we have developed a general approach for a systematic evaluation of microbial impact on the long-term performance of the repository. We have demonstrated that data on microbial population alone are not sufficient for the evaluation of microbial impact on repository performance and a sensible approach for such evaluation must be based on the consideration of environmental constraints on microbial reaction pathways. We have applied our approach to both the Yucca Mountain (YM) repository and the Waste Isolation Pilot Plant (WIPP). We have demonstrated that the effect of microbial activity on the near-field chemistry in the Yucca Mountain repository is negligible because of limited nutrient supply and harsh environmental conditions created by waste emplacement. Whereas for the WIPP, we have shown that, due to the presence of a large quantity of organic materials and nutrients in the wastes, a significant microbial activity can potentially be stimulated and its impact on repository performance can be evaluated with carefully designed incubation experiments coupled with performance assessment calculations. The impact of microbial gas generation on disposal room chemistry in the WIPP can be mitigated by introducing MgO as a backfill material.

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Controlled synthesis of photochromic polymer brushes by atom transfer radical polymerization

Proposed for publication in Macromolecules.

Bell, Nelson S.; Piech, Marcin P.

This work reports on the grafting of methyl methacrylate polymer brushes containing spirobenzopyran pendant groups from flat silica surfaces and colloidal particles utilizing atom transfer radical polymerization (ATRP). The reaction conditions were optimized with respect to the kind of surface bound initiator, the type of halide and ligand used in the catalytic complex, the presence/absence of untethered initiator, and solvent type. This enabled synthesis of coatings up to 80 {+-} 3 nm thick with controlled spirobenzopyran content. While polymerization kinetics indicate the presence of chain termination reactions, the 'living' character of the process is confirmed by controlled formation of block copolymer brushes. UV/vis spectroscopy was used to characterize the UV-induced isomerization of spirobenzopyran to zwitterionic merocyanine and the thermal back-reaction. Spectral and kinetic analyses of this latter bleaching process points to the existence of free and associated merocyanines in the polymeric brush in both tetrahydrofuran and toluene. However, stabilization of merocyanine species by the polymer matrix is considerably greater in toluene with thermal back-reaction rates approaching those determined for solid dry films.

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Photophysical effects between spirobenzopyran-methylmethacrylate functionalized colloidal particles

Proposed for publication in Langmuir.

Bell, Nelson S.; Piech, Marcin P.

Colloidal particles were derivatized with end-grafted polymethylmethacryate polymer brushes containing varying concentrations of spirobenzopyran photochromic molecules. The polymers were grown from initiator-functionalized silica partilces by an atom-transfer radical polymerization (ATRP). These core-shell colloids formed stable suspensions in toluene with the spirobenzopyran in its closed, nonpolar form. However, UV-induced photoswitching of the photochrome to its open, polar merocyanine isomer caused rapid aggregation. The nature of this colloidal stability transition was examined with respect to the spirobenzopyran content in the polymeric brush and solvent polarity. Turbidimetry, wettability studies, UV-vis spectroscopy, suspension rheology, SEM, and visual inspection were utilized to characterize the system photoswitchability. It was found that the system exhibiting the greatest transition in toluene was the copolymer brush composed of 20% spirobenzopyran and 80% methyl methacrylate.

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Patterned colloid assembly by grafted photochromic polymer layers

Proposed for publication in Langmuir.

Bell, Nelson S.; Piech, Marcin P.

Quartz surfaces and colloidal silica particles were derivatized with a poly(methyl methacrylate) copolymer containing spirobenzopyran (SP) photochromic molecules in the pendant groups at a concentration of 20 mol %. Two-photon near-IR excitation ({approx}780 nm) was then used to create chemically distinct patterns on the modified surfaces through a photochromic process of SP transformation to the zwitterionic merocyanine (MC) isomer. The derivatized colloids were approximately 10 times more likely to adsorb onto the photoswitched, MC regions. Surface coverage and adsorption kinetics have been compared to the mean-field model of irreversible monolayer adsorption.

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Development of a photovoltaic power supply for wireless sensor networks

Harvey, Matthew R.; Kyker, Ronald D.

This report examines the design process of a photovoltaic (solar) based power supply for wireless sensor networks. Such a system stores the energy produced by an array of photovoltaic cells in a secondary (rechargeable) battery that in turn provides power to the individual node of the sensor network. The goal of such a power supply is to enable a wireless sensor network to have an autonomous operation on the order of years. Ideally, such a system is as small as possible physically while transferring the maximum amount of available solar energy to the load (the node). Within this report, there is first an overview of current solar and battery technologies, including characteristics of different technologies and their impact on overall system design. Second is a general discussion of modeling, predicting, and analyzing the extended operation of a small photovoltaic power supply and setting design parameters. This is followed by results and conclusions from the testing of a few basic systems. Lastly, some advanced concepts that may be considered in order to optimize future systems will be discussed.

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An improved convergence bound for aggregation-based domain decomposition preconditioners

Proposed for publication in the SIAM Journal on Matrix Analysis and Applications.

Sala, Marzio S.; Shadid, John N.; Tuminaro, Raymond S.

In this paper we present a two-level overlapping domain decomposition preconditioner for the finite-element discretization of elliptic problems in two and three dimensions. The computational domain is partitioned into overlapping subdomains, and a coarse space correction, based on aggregation techniques, is added. Our definition of the coarse space does not require the introduction of a coarse grid. We consider a set of assumptions on the coarse basis functions to bound the condition number of the resulting preconditioned system. These assumptions involve only geometrical quantities associated with the aggregates and the subdomains. We prove that the condition number using the two-level additive Schwarz preconditioner is O(H/{delta} + H{sub 0}/{delta}), where H and H{sub 0} are the diameters of the subdomains and the aggregates, respectively, and {delta} is the overlap among the subdomains and the aggregates. This extends the bounds presented in [C. Lasser and A. Toselli, Convergence of some two-level overlapping domain decomposition preconditioners with smoothed aggregation coarse spaces, in Recent Developments in Domain Decomposition Methods, Lecture Notes in Comput. Sci. Engrg. 23, L. Pavarino and A. Toselli, eds., Springer-Verlag, Berlin, 2002, pp. 95-117; M. Sala, Domain Decomposition Preconditioners: Theoretical Properties, Application to the Compressible Euler Equations, Parallel Aspects, Ph.D. thesis, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland, 2003; M. Sala, Math. Model. Numer. Anal., 38 (2004), pp. 765-780]. Numerical experiments on a model problem are reported to illustrate the performance of the proposed preconditioner.

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Cleaning and materials compatibility test results for elimination of flammable solvents in wipe applications

Lopez, Edwin P.

In recent years, efforts have been made within the nuclear weapons complex (National Nuclear Security Administration) of the Department of Energy (DOE) to replace Resource Conservation and Recovery Act (RCRA) regulated solvents (i.e., flammable, toxic, corrosive, and reactive) and ozone-depleting chemicals (ODC) with more benign alternatives. Within the National Nuclear Security Administration (NNSA) and the Department of Defense (DoD) sectors, these solvents are used for cleaning hardware during routine maintenance operations. A primary goal of this study is to replace flammable solvents used in wiping applications. Two cleaners, including a hydrofluoroether (HFE) and an azeotrope of the HFE and isopropyl alcohol (IPA), have been studied as potential replacements for flammable solvents. Cleaning efficacy, short-term and long-term materials compatibility, corrosion, drying times, flammability, environment, safety and health (ES&H) and accelerated aging issues were among the experiments used to screen candidate solvents by the interagency team performing this work. This report presents cleaning efficacy results as determined by the contact angle Goniometer as well as materials compatibility results of various metal alloys and polymers. The results indicate that IPA (baseline cleaner) and the HFE/IPA azeotrope are roughly equivalent in their ability to remove fluorinated grease, silicone grease, and a simulated finger print contaminant from various metal alloys. All of the ASTM sandwich and immersion corrosion tests with IPA, HFE or the HFE/IPA azeotrope on metal alloys showed no signs of corrosion. Furthermore, no deleterious effects were noted for polymeric materials immersed in IPA, HFE, or the HFE/IPA azeotrope.

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Hazardous Materials Management Program Report- 2005

Brynildson, Mark E.

The annual program report provides detailed information about all aspects of the SNL/CA Hazardous Materials Management Program for a given calendar year. It functions as supporting documentation to the SNL/CA Environmental Management System Program Manual. The 2005 program report describes the activities undertaken during the past year, and activities planned in future years to implement the Hazardous Materials Management Program, one of six programs that supports environmental management at SNL/CA.

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Xyce Parallel Electronic Simulator - Users' Guide Version 2.1

Hutchinson, Scott A.; Keiter, Eric R.; Hoekstra, Robert J.; Russo, Thomas V.; Rankin, Eric R.; Pawlowski, Roger P.; Fixel, Deborah A.; Schiek, Richard S.; Bogdan, Carolyn W.

This manual describes the use of theXyceParallel Electronic Simulator.Xycehasbeen designed as a SPICE-compatible, high-performance analog circuit simulator, andhas been written to support the simulation needs of the Sandia National Laboratorieselectrical designers. This development has focused on improving capability over thecurrent state-of-the-art in the following areas:%04Capability to solve extremely large circuit problems by supporting large-scale par-allel computing platforms (up to thousands of processors). Note that this includessupport for most popular parallel and serial computers.%04Improved performance for all numerical kernels (e.g., time integrator, nonlinearand linear solvers) through state-of-the-art algorithms and novel techniques.%04Device models which are specifically tailored to meet Sandia's needs, includingmany radiation-aware devices.3 XyceTMUsers' Guide%04Object-oriented code design and implementation using modern coding practicesthat ensure that theXyceParallel Electronic Simulator will be maintainable andextensible far into the future.Xyceis a parallel code in the most general sense of the phrase - a message passingparallel implementation - which allows it to run efficiently on the widest possible numberof computing platforms. These include serial, shared-memory and distributed-memoryparallel as well as heterogeneous platforms. Careful attention has been paid to thespecific nature of circuit-simulation problems to ensure that optimal parallel efficiencyis achieved as the number of processors grows.The development ofXyceprovides a platform for computational research and de-velopment aimed specifically at the needs of the Laboratory. WithXyce, Sandia hasan %22in-house%22 capability with which both new electrical (e.g., device model develop-ment) and algorithmic (e.g., faster time-integration methods, parallel solver algorithms)research and development can be performed. As a result,Xyceis a unique electricalsimulation capability, designed to meet the unique needs of the laboratory.4 XyceTMUsers' GuideAcknowledgementsThe authors would like to acknowledge the entire Sandia National Laboratories HPEMS(High Performance Electrical Modeling and Simulation) team, including Steve Wix, CarolynBogdan, Regina Schells, Ken Marx, Steve Brandon and Bill Ballard, for their support onthis project. We also appreciate very much the work of Jim Emery, Becky Arnold and MikeWilliamson for the help in reviewing this document.Lastly, a very special thanks to Hue Lai for typesetting this document with LATEX.TrademarksThe information herein is subject to change without notice.Copyrightc 2002-2003 Sandia Corporation. All rights reserved.XyceTMElectronic Simulator andXyceTMtrademarks of Sandia Corporation.Orcad, Orcad Capture, PSpice and Probe are registered trademarks of Cadence DesignSystems, Inc.Silicon Graphics, the Silicon Graphics logo and IRIX are registered trademarks of SiliconGraphics, Inc.Microsoft, Windows and Windows 2000 are registered trademark of Microsoft Corporation.Solaris and UltraSPARC are registered trademarks of Sun Microsystems Corporation.Medici, DaVinci and Taurus are registered trademarks of Synopsys Corporation.HP and Alpha are registered trademarks of Hewlett-Packard company.Amtec and TecPlot are trademarks of Amtec Engineering, Inc.Xyce's expression library is based on that inside Spice 3F5 developed by the EECS De-partment at the University of California.All other trademarks are property of their respective owners.ContactsBug Reportshttp://tvrusso.sandia.gov/bugzillaEmailxyce-support%40sandia.govWorld Wide Webhttp://www.cs.sandia.gov/xyce5 XyceTMUsers' GuideThis page is left intentionally blank6

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Relaxation of compressively strained AlGaN by inclined threading dislocations

Proposed for publication in Applied Physics Letters.

Follstaedt, D.M.; Provencio, P.N.; Allerman, A.A.; Floro, Jerrold A.; Crawford, Mary H.

Transmission electron microscopy and x-ray diffraction were used to assess the microstructure and strain of Al{sub x}Ga{sub 1?x}N(x = 0.61-0.64) layers grown on AlN. The compressively-strained AlGaN is partially relaxed by inclined threading dislocations, similar to observations on Si-doped AlGaN by P. Cantu, F. Wu, P. Waltereit, S. Keller, A. E. Romanov, U. K. Mishra, S. P. DenBaars, and J. S. Speck [Appl. Phys. Lett. 83, 674 (2003) ]; however, in our material, the dislocations bend before the introduction of any Si. The bending may be initiated by the greater lattice mismatch or the lower dislocation density of our material, but the presence of Si is not necessarily required. The relaxation by inclined dislocations is quantitatively accounted for with the model of A. E. Romanov and J. S. Speck [Appl. Phys. Lett. 83, 2569 (2003)], and we demonstrate the predicted linear dependence of relaxation on layer thickness. Notably, such relaxation was not found in tensile strained AlGaN grown on GaN [J. A. Floro, D. M. Follstaedt, P. Provencio, S. J. Hearne, and S. R. Lee, J. Appl. Phys. 96, 7087 (2004)], even though the same mechanism appears applicable.

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Results 84401–84600 of 96,771
Results 84401–84600 of 96,771