Sampling and Streaming Algorithms for Counting Small Patterns in Large Graphs
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Strain, a journal in experimental mechanics
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Measuring and controlling the power and energy consumption of high performance computing systems by various components in the software stack is an active research area [13, 3, 5, 10, 4, 21, 19, 16, 7, 17, 20, 18, 11, 1, 6, 14, 12]. Implementations in lower level software layers are beginning to emerge in some production systems, which is very welcome. To be most effective, a portable interface to measurement and control features would significantly facilitate participation by all levels of the software stack. We present a proposal for a standard power Application Programming Interface (API) that endeavors to cover the entire software space, from generic hardware interfaces to the input from the computer facility manager.
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A review of dosimetry results from 1 January 2009 through 31 December 2013 was conducted to demonstrate that radiation protection methods used are compliant with regulatory limits and conform to the ALARA philosophy. This included a review and evaluation of personnel dosimetry (external and internal) results at Sandia National Laboratories, New Mexico as well as at Sandia National Laboratories, California. Additionally, results of environmental monitoring efforts at Sandia National Laboratories, New Mexico were reviewed. ALARA is a philosophical approach to radiation protection by managing and controlling radiation exposures (individual and collective) to the work force and to the general public to levels that are As Low As is Reasonably Achievable taking social, technical, economic, practical, and public policy considerations into account. ALARA is not a dose limit but a process which has the objective of attaining doses as far below applicable dose limits As Low As is Reasonably Achievable.
Density-functional theory (DFT) was used to study the C2v 110g Ga interstitial in GaAs (see inset).
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Manuscript submission to Journal of Physical Chemistry
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CMAME journal
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SIAM Journal on Scientific Computing
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Military Operations Research Society Journal
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IEEE TRANSACTIONS ON RELIABILITY - SPECIAL SECTION ON SOFTWARE QUALITY
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This research and development project is focused on the advancement of a technology that produces hydrogen at a cost that is competitive with fossil-based fuels for transportation.
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Applied Physics Letters
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This report summarizes the results generated in FY13 for cable insulation in support of DOE's Light Water Reactor Sustainability (LWRS) Program, in collaboration with the US-Argentine Binational Energy Working Group (BEWG). A silicone (SiR) cable, which was stored in benign conditions for ~30 years, was obtained from Comision Nacional de Energia Atomica (CNEA) in Argentina. Physical property testing was performed on the as-received cable. This cable was artificially aged to assess behavior with additional analysis. SNL observed appreciable tensile elongation values for all cable insulations received, indicative of good mechanical performance. Of particular note, the work presented here provides correlations between measured tensile elongation and other physical properties that may be potentially leveraged as a form of condition monitoring (CM) for actual service cables. It is recognized at this point that the polymer aging community is still lacking the number and types of field returned materials that are desired, but SNL—along with the help of others—is continuing to work towards that goal. This work is an initial study that should be complimented with location-mapping of environmental conditions of CNEA plant conditions (dose and temperature) as well as retrieval, analysis, and comparison with in-service cables.
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With the advent of laser cooling and trapping, neutral atoms have become a foundational source of accuracy for applications in metrology and are showing great potential for their use as qubits in quantum information. In metrology, neutral atoms provide the most accurate references for the measurement of time and acceleration. The unsurpassed stability provided by these systems make neutral atoms an attractive avenue to explore applications in quantum information and computing. However, to fully investigate the eld of quantum information, we require a method to generate entangling interactions between neutral-atom qubits. Recent progress in the use of highly-excited Rydberg states for strong dipolar interactions has shown great promise for controlled entanglement using the Rydberg blockade phenomenon. I report the use of singly-trapped 133Cs atoms as qubits for applications in metrology and quantum information. Each atom provides a physical basis for a single qubit by encoding the required information into the ground-state hyper ne structure of 133Cs. Through the manipulation of these qubits with microwave and optical frequency sources, we demonstrate the capacity for arbitrary single-qubit control by driving qubit rotations in three orthogonal directions on the Bloch sphere. With this control, we develop an atom interferometer that far surpasses the force sensitivity of other approaches by applying the well-established technique of lightpulsed atom-matterwave interferometry to single atoms. Following this, we focus on two-qubit interactions using highly-excited Rydberg states. Through the development of a unique single-photon approach to Rydberg excitation using an ultraviolet laser at 319 nm, we observe the Rydberg blockade interaction between atoms separated by 6.6(3) m. Motivated by the observation of Rydberg blockade, we study the application of Rydberg-dressed states for a quantum controlled-phase gate. Using a realistic simulation of the dressed-state dynamics, we calculate a controlled-phase gate delity of 94% that is primarily limited by Doppler frequency shifts. Finally, we employ our single-photon excitation laser to measure the Rydberg-dressed interaction, thus demonstrating the viability of this approach.
Composite structures are increasing in prevalence throughout the aerospace, wind, defense, and transportation industries, but the many advantages of these materials come with unique challenges, particularly in inspecting and repairing these structures. Because composites of- ten undergo sub-surface damage mechanisms which compromise the structure without a clear visual indication, inspection of these components is critical to safely deploying composite re- placements to traditionally metallic structures. Impact damage to composites presents one of the most signi fi cant challenges because the area which is vulnerable to impact damage is generally large and sometimes very dif fi cult to access. This work seeks to further evolve iden- ti fi cation technology by developing a system which can detect the impact load location and magnitude in real time, while giving an assessment of the con fi dence in that estimate. Fur- thermore, we identify ways by which impact damage could be more effectively identi fi ed by leveraging impact load identi fi cation information to better characterize damage. The impact load identi fi cation algorithm was applied to a commercial scale wind turbine blade, and results show the capability to detect impact magnitude and location using a single accelerometer, re- gardless of sensor location. A technique for better evaluating the uncertainty of the impact estimates was developed by quantifying how well the impact force estimate meets the assump- tions underlying the force estimation technique. This uncertainty quanti fi cation technique was found to reduce the 95% con fi dence interval by more than a factor of two for impact force estimates showing the least uncertainty, and widening the 95% con fi dence interval by a fac- tor of two for the most uncertain force estimates, avoiding the possibility of understating the uncertainty associated with these estimates. Linear vibration based damage detection tech- niques were investigated in the context of structural stiffness reductions and impact damage. A method by which the sensitivity to damage could be increased for simple structures was presented, and the challenges of applying that technique to a more complex structure were identi fi ed. The structural dynamic changes in a weak adhesive bond were investigated, and the results showed promise for identifying weak bonds that show little or no static reduction in stiffness. To address these challenges in identifying highly localized impact damage, the possi- bility of detecting damage through nonlinear dynamic characteristics was also identi fi ed, with a proposed technique which would leverage impact location estimates to enable the detection of impact damage. This nonlinear damage identi fi cation concept was evaluated on a composite panel with a substructure disbond, and the results showed that the nonlinear dynamics at the damage site could be observed without a baseline healthy reference. By further developing impact load identi fi cation technology and combining load and damage estimation techniques into an integrated solution, the challenges associated with impact detection in composite struc- tures can be effectively solved, thereby reducing costs, improving safety, and enhancing the operational readiness and availability of high value assets.
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The version of STK (Sierra ToolKit) that has long been provided with Trilinos is no longer supported by the core develop- ment team. With the introduction of a the new STK library into Trilinos, the old STK has been renamed to stk classic. This document contains a rough guide of how to port a stk classic code to STK.
Monitoring infections in vectors such as mosquitoes,sand flies, tsetse flies, and ticks to identify human pathogens may serve as an early warning detection system to direct local government disease preventive measures. One major hurdle in detection is the ability to screen large numbers of vectors for human pathogens without the use of genotype-specific molecular techniques. Next generation sequencing (NGS) provides an unbiased platform capable of identifying known and unknown pathogens circulating within a vector population, but utilizing this technology is time-consuming and costly for vector-borne disease surveillance programs. To address this we developed cost-effective Ilumina® RNA-Seq library preparation methodologiesin conjunction with an automated computational analysis pipeline to characterize the microbial populations circulating in Culex mosquitoes (Culex quinquefasciatus, Culex quinquefasciatus/pipiens complex hybrids, and Culex tarsalis) throughout California. We assembled 20 novel and well-documented arboviruses representing members of Bunyaviridae, Flaviviridae, Ifaviridae, Mesoniviridae, Nidoviridae, Orthomyxoviridae, Parvoviridae, Reoviridae, Rhabdoviridae, Tymoviridae, as well as several unassigned viruses. In addition, we mapped mRNA species to divergent species of trypanosoma and plasmodium eukaryotic parasites and characterized the prokaryotic microbial composition to identify bacterial transcripts derived from wolbachia, clostridium, mycoplasma, fusobacterium and campylobacter bacterial species. We utilized these microbial transcriptomes present in geographically defined Culex populations to define spatial and mosquito species-specific barriers of infection. The virome and microbiome composition identified in each mosquito pool provided sufficient resolution to determine both the mosquito species and the geographic region in California where the mosquito pool originated. This data provides insight into the complexity of microbial species circulating in medically important Culex mosquitoes and their potential impact on the transmission of vector-borne human/veterinary pathogens in California.
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To define the GFF extension and the data contained in the extension.
This document provides the basic GFF format definition for a GFF file. This document covers the contents of the main header and the basic GFF file structure. The contents of specific extensions are covered in a separate document.
As part of Sandia's program to simulate the effect of displacement damage on operation of heterojunction bipolar transistors (HBTs), we are examining the formulation in 1-D of band-to-band (bb) and band-to-trap (b-t) carrier tunneling.
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Microscopy and Microanalysis
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Presented in this report is the description of a new method for neutron energy spectrum adjustment which uses a genetic algorithm to minimize the difference between calculated and measured reaction probabilities. The measured reaction probabilities are found using neutron activation analysis. The method adjusts a trial spectrum provided by the user which is typically calculated using a neutron transport code such as MCNP. Observed benefits of this method over currently existing methods include the reduction in unrealistic artefacts in the spectral shape as well as a reduced sensitivity to increases in the energy resolution of the derived spectrum. This report presents the adjustment results for various spectrum altering bucket environments in the central cavity of the Annular Core Research Reactor, as well as the adjustment results for the spectrum in the Sandia Pulse Reactor III. In each case, the results are compared to those generated using LSL-M2, which is a code commonly used for the purpose of spectrum adjustment. The genetic algorithm produces spectrum-averaged reaction probabilities with agreement to measured values, and comparable to those resulting from LSL-M2. The true benefit to this method, the reduction of shape artefacts in the spectrum, is difficult to quantify but can be clearly seen in the comparison of the final adjustments. Beyond these preliminary results, this report also gives a thorough description of the genetic algorithm and presents instructions for running the code using the graphical user interface. In its present state, the code does not provide uncertainties or correlations for the adjusted spectrum. This capability is currently being added, and will be presented in future work.
This report details a student summer internship at Sandia National Laboratory in Livermore, CA.
This document contains the glossary of terms used for the IDC Reengineering Phase 2 project. This version was created for Iteration I1.
The aircraft industry continues to increase its use of composite materials, most noteworthy in the arena of principle structural elements. This expanded use, coupled with difficulties associated with damage tolerance analysis of composites, has placed greater emphasis on the application of accurate nondestructive inspection (NDI) methods. Traditionally, a few ultrasonic-based inspection methods have been used to inspect solid laminate structures. Recent developments in more advanced NDI techniques have produced a number of new inspection options. Many of these methods can be categorized as wide area techniques that produce two-dimensional flaw maps of the structure. An experiment has been developed to assess the ability of both conventional and advanced NDI techniques to detect voids, disbonds, delaminations, and impact damage in adhesively bonded composite aircraft structures. A series of solid laminate, carbon composite specimens with statistically relevant flaw profiles are being inspected using conventional, hand-held pulse echo UT and resonance, as well as, new NDI methods that have recently been introduced to improve sensitivity and repeatability of inspections. The primary factors affecting flaw detection in laminates are included in this study: material type, flaw profiles, presence of complex geometries like taper and substructure elements, presence of fasteners, secondarily bonded joints, and environmental conditions. One phase of this effort utilized airline personnel to study Probability of Detection (POD) in the field and to formulate improvements to existing inspection techniques. In addition, advanced NDI methods for laminate inspections — such as thermography, shearography, laser ultrasonics, microwave, and phased/linear array UT — were applied to quantify the improvements achievable through the use of more sophisticated NDI. This report presents the composite laminate experiment design and the POD results for advanced NDI with comparisons to results achieved by airline inspectors using conventional UT methods. A companion report provides the full set of results from the conventional NDI testing.
Results reported here continue to support the FY13 conclusion that direct disposal of DPCs is technically feasible, at least for some DPCs, and for some disposal concepts (geologic host media). Much of the work performed has reached a point where site-specific information would be needed for further resolution. Several activities in FY14 have focused on clay/shale media because of potential complications resulting from low thermal conductivity, limited temperature tolerance, and the need to construct hundreds of kilometers of emplacement drifts that will remain stable for at least 50 years. Technologies for rapid excavation and liner installation have significantly advanced in the past 20 years. Tunnel boring machines are the clear choice for large-scale excavation. The first TBM excavations, including some constructed in clay or shale media, are now approaching 50 years of service. Open-type TBMs are a good choice but the repository host formation would need to have sufficient compressive strength for the excavation face to be self-supporting. One way to improve the strength-stress relationship is to reduce the repository depth in soft formations (e.g., 300 m depth). The fastest construction appears to be possible using TBMs with a single-pass liner made of pre-fabricated concrete segments. Major projects have been constructed with prefabricated segmented liner systems, and with cast-in-place concrete liners. Cost comparisons show that differences in project management and financing may be larger cost factors than the choice of liner systems. Costs for large-scale excavation and construction in clay/shale media vary widely but can probably be limited to $10,000 per linear meter, which is similar to previous estimates for repository construction. Concepts for disposal of DPC-based waste packages in clay/shale media are associated with thermal management challenges because of the relatively low thermal conductivity and limited temperature tolerance. Peak temperature limits of 100°C or lower for clay-rich materials have been selected by some international programs, but a limit above 100°C could help to shorten the duration of surface decay storage and repository ventilation. The effects of locally higher peak temperatures on repository performance need to be evaluated (in addition to the effects at lower temperatures). This report describes a modeling approach that couples the TOUGH2 and FLAC3D codes to represent thermally driven THM processes, as a demonstration of the types of models needed.
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
Self-healing of polymer films often takes place as the molecules diffuse across a damaged region, above their melting temperature. Using molecular dynamics simulations we probe the healing of polymer films and compare the results with those obtained for thermal welding of homopolymer slabs. These two processes differ from each other in their interfacial structure since damage leads to increased polydispersity and more short chains. A polymer sample was cut into two separate films that were then held together in the melt state. The recovery of the damaged film was followed as time elapsed and polymer molecules diffused across the interface. The mass uptake and formation of entanglements, as obtained from primitive path analysis, are extracted and correlated with the interfacial strength obtained from shear simulations. We find that the diffusion across the interface is significantly faster in the damaged film compared to welding because of the presence of short chains. Though interfacial entanglements increase more rapidly for the damaged films, a large fraction of these entanglements are near chain ends. As a result, the interfacial strength of the healing film increases more slowly than for welding. For both healing and welding, the interfacial strength saturates as the bulk entanglement density is recovered across the interface. However, the saturation strength of the damaged film is below the bulk strength for the polymer sample. At saturation, cut chains remain near the healing interface. They are less entangled and as a result they mechanically weaken the interface. Chain stiffness increases the density of entanglements, which increases the strength of the interface. Our results show that a few entanglements across the interface are sufficient to resist interfacial chain pullout and enhance the mechanical strength. © 2014 American Physical Society.
Journal of Physical Chemistry B
Electrostatics plays an important role in the self-assembly of amphiphilic peptides. To develop a molecular understanding of the role of the electrostatic interactions, we develop a coarse-grained model peptide and apply self-consistent field theory to investigate the peptide assembly into a variety of aggregate nanostructures. We find that the presence and distribution of charged groups on the hydrophilic branches of the peptide can modify the molecular configuration from extended to collapsed. This change in molecular configuration influences the packing into spherical micelles, cylindrical micelles (nanofibers), or planar bilayers. The effects of charge distribution therefore have important implications for the design and utility of functional materials based on peptides. © 2014 American Chemical Society.
Journal of Physical Chemistry B
Electrostatics plays an important role in the self-assembly of amphiphilic peptides. To develop a molecular understanding of the role of the electrostatic interactions, we develop a coarse-grained model peptide and apply self-consistent field theory to investigate the peptide assembly into a variety of aggregate nanostructures. We find that the presence and distribution of charged groups on the hydrophilic branches of the peptide can modify the molecular configuration from extended to collapsed. This change in molecular configuration influences the packing into spherical micelles, cylindrical micelles (nanofibers), or planar bilayers. The effects of charge distribution therefore have important implications for the design and utility of functional materials based on peptides. © 2014 American Chemical Society.
Proceedings of the IEEE Power Engineering Society Transmission and Distribution Conference