Efficiently embedding and/or integrating mechanistic information with data-driven models is essential if it is desired to simultaneously take advantage of both engineering principles and data-science. The opportunity for hybridization occurs in many scenarios, such as the development of a faster model of an accurate high-fidelity computer model; the correction of a mechanistic model that does not fully-capture the physical phenomena of the system; or the integration of a data-driven component approximating an unknown correlation within a mechanistic model. At the same time, different techniques have been proposed and applied in different literatures to achieve this hybridization, such as hybrid modeling, physics-informed Machine Learning (ML) and model calibration. In this paper we review the methods, challenges, applications and algorithms of these three research areas and discuss them in the context of the different hybridization scenarios. Moreover, we provide a comprehensive comparison of the hybridization techniques with respect to their differences and similarities, as well as advantages and limitations and future perspectives. Finally, we apply and illustrate hybrid modeling, physics-informed ML and model calibration via a chemical reactor case study.
New approaches to preventing and treating infections, particularly of the respiratory tract, are needed. One promising strategy is to reconfigure microbial communities (microbiomes) within the host to improve defense against pathogens. Probiotics and prebiotics for gastrointestinal (GI) infections offer a template for success. We sought to develop comparable countermeasures for respiratory infections. First, we characterized interactions between the airway microbiome and a biodefense-related respiratory pathogen (Burkholderia thailandensis; Bt), using a mouse model of infection. Then, we recovered microbiome constituents from the airway and assessed their ability to re-colonize the airway and protect against respiratory Bt infection. We found that microbiome constituents belonging to Bacillus and related genuses frequently displayed colonization and anti-Bt activity. Comparative growth requirement profiling of these Bacillus strains vs Bt enabled identification of candidate prebiotics. This work serves as proof of concept for airway probiotics, as well as a strong foundation for development of airway prebiotics.
Stinchfield, Georgia; Biegler, Lorenz T.; Eslick, John C.; Jacobson, Clas; Miller, David C.; Siirola, John D.; Zamarripa; Zhang, Chen; Zhang, Qi; Laird, Carl D.
The Grey Zone Test Range (GZTR) social model operates as a piece of the overall GZTR modeling effort. It works in conjunction with supply models for resources, an electric grid model for power availability, and a traffic model for road congestion, as well as a general controller framework that allows external system effects. The social model functions as an aggregate model where the entire population of the city is divided into groups based on the Transportation Analysis Zones (TAZs), a common geospatial boundary present in all GZTR models. These groups will act as a singular community; each time step the state of the system around them will be assessed and then community will come up with a general plan of action that they will attempt to follow for the day. Additionally, they will track values for their general emotional state and memory about negative impacts in the near past.