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Space‐Time Causal Discovery in Earth System Science: A Local Stencil Learning Approach

Journal of Geophysical Research: Machine Learning and Computation

Nichol, J.J.; Weylandt, Michael; Fricke, G.M.; Moses, Melanie E.; Bull, Diana L.; Swiler, Laura P.

Causal discovery tools enable scientists to infer meaningful relationships from observational data, spurring advances in fields as diverse as biology, economics, and climate science. Despite these successes, the application of causal discovery to space-time systems remains immensely challenging due to the high-dimensional nature of the data. For example, in climate sciences, modern observational temperature records over the past few decades regularly measure thousands of locations around the globe. To address these challenges, we introduce Causal Space-Time Stencil Learning (CaStLe), a novel meta-algorithm for discovering causal structures in complex space-time systems. CaStLe leverages regularities in local space-time dependencies to learn governing global dynamics. This local perspective eliminates spurious confounding and drastically reduces sample complexity, making space-time causal discovery practical and effective. For causal discovery, CaStLe flexibly accepts any appropriately adapted time series causal discovery algorithm to recover local causal structures. These advances enable causal discovery of geophysical phenomena that were previously unapproachable, including non-periodic, transient phenomena such as volcanic eruption plumes. Regularities in local space-time dependencies are transformed into informative spatial replicates, which actually improve CaStLe's performance when applied to ever-larger spatial grids. We successfully apply CaStLe to discover the atmospheric dynamics governing the climate response to the 1991 Mount Pinatubo volcanic eruption. We provide validation experiments to demonstrate the effectiveness of CaStLe over existing causal-discovery frameworks on a range of geophysics-inspired benchmarks while identifying the method's limitations and domains where its assumptions may not hold.

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Incorporating geological structure into sensitivity analysis of subsurface contaminant transport

Advances in Water Resources

Bigler, Lisa A.; Laforce, Tara C.; Swiler, Laura P.

Simulating subsurface contaminant transport at the kilometer-scale often entails modeling reactive flow and transport within and through complex geologic structures. These structures are typically meshed by hand and as a result geologic structure is usually represented by one or a few deterministically generated geological models for uncertainty studies of flow and transport in the subsurface. Uncertainty in geologic structure can have a significant impact on contaminant transport. In this study, the impact of geologic structure on contaminant tracer transport in a shale formation is investigated for a simplified generic deep geologic repository for permanent disposal of spent nuclear fuel. An open-source modeling framework is used to perform a sensitivity analysis study on transport of two tracers from a generic spent nuclear fuel repository with uncertain location of the interfaces between the stratum of the geologic structure. The automated workflow uses sampled realizations of the geological structural model in addition to uncertain flow parameters in a nested sensitivity analysis. Concentration of the tracers at observation points within, in line with, and downstream of the repository are used as the quantities of interest for determining model sensitivity to input parameters and geological realization. Finally, the results of the study indicate that the location of strata interfaces in the geological structure has a first-order impact on tracer transport in the example shale formation, and that this impact may be greater than that of the uncertain flow parameters.

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Sensitivity Analysis Comparisons on Geologic Case Studies: An International Collaboration, Volume 2

Swiler, Laura P.; Becker, Dirk-Alexander; Brooks, Dusty M.; Govaerts, Joan; Koskinen, Lasse; Kupiainen, Pekka; Plischke, Elmar; Rohlig, Klaus-Jurgen; Samper, Javier; Spiessl, Sabine M.

Over the past six years, an informal working group has developed to investigate existing sensitivity analysis methods, examine new methods, and identify best practices. The focus is on the use of sensitivity analysis in case studies involving geologic disposal of spent nuclear fuel or nuclear waste. Three additional case studies are presented in this Volume 2 report, including more nonlinear behavior, outputs which exhibit bifurcation, regime changes, and nested sampling.

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GDSA Framework Development and Process Model Integration FY2024

Mariner, Paul E.; Leone, Rosemary C.; Debusschere, Bert J.; Madsen, Calvin F.; Curry, Caitlin J.; Garcia, Mariah L.; Prouty, J.L.; Rogers, Ralph; Lopez, Carlos M.; Barela, Amanda C.; Swiler, Laura P.; Harvey, Jacob; Brooks, Dusty M.; Basurto, Eduardo

The Disposal Research & Development (Disposal R&D) Campaign of the U.S. Department of Energy (DOE) Office of Nuclear Energy (NE), Office of Spent Fuel & High-Level Waste Disposition is conducting research and development (R&D) on geologic disposal of spent nuclear fuel (SNF) and high-level nuclear waste (HLW). A high priority for Disposal R&D is disposal system modeling (Sassani et al. 2023). The Geologic Disposal Safety Assessment (GDSA) work package is charged with developing a disposal system modeling and analysis capability for evaluating generic disposal system performance for nuclear waste in geologic media.

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GDSA framework, a computational framework for complex modeling problems in radioactive waste management

Nuclear Engineering and Technology

Portone, Teresa; Swiler, Laura P.; Eckert, Aubrey; Basurto, Eduardo; Friedman-Hill, Ernest

This paper details a computational framework to produce automated, graphical workflows, and how this framework can be deployed to support complex modeling problems like those in nuclear engineering. Key benefits of the framework include: automating previously manual workflows; intuitive construction and communication of workflows through a graphical interface; and automated file transfer and handling for workflows deployed across heterogeneous computing resources. This paper demonstrates the framework's application to probabilistic post-closure performance assessment of systems for deep geologic disposal of nuclear waste. However, the framework is a general capability that can help users running a variety of computational studies.

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CLimate Impact: Determining Etiology thRough pAthways (CLDERA)

Bull, Diana L.; Peterson, Kara J.; Shand, Lyndsay; Swiler, Laura P.; Tezaur, Irina K.; Cook, Benjamin K.; Salinger, Andrew G.; Amann, Clare M.; Watts, Bernadette M.; Leland, Robert W.; Bertagna, Luca; Brown, Hunter; Brown, Meredith G.L.; Campos, Mauricio; Carlson, Max L.; Chowdhary, Kenny; Crockett, Joseph L.; Davis, Warren L.; Ehrmann, Thomas; Garrett, Robert C.; Goode, Katherine J.; Gulian, Mamikon; Hall, Carole R.; Harper, Graham B.; Hart, Joseph L.; Hickey, James J.; Hillman, Benjamin R.; Houchens, Brent C.; Huerta, Jose G.; Krofcheck, Daniel J.; Li, Justin D.; Manickam, Indu; Mcclernon, Kellie L.; Mccombs, Audrey; Nichol, J.J.; Peterson, Matthew G.; Ries, Daniel C.; Smith, Mark A.; Staid, Andrea; Steyer, Andrew; Tucker, J.D.; Wagman, Benjamin M.; Watkins, Jerry E.; Wentland, Christopher R.; Wenzel, Everett A.; Weylandt, Robert M.; Yarger, Andrew N.; Jablonowski, Christiane; Hollowed, Joseph P.; Liu, Xiaohong; Hu, Allen; Li, Bo; Shi-Jun, Samantha; Tsigaridis, Kostas; Singh, Ram; Marvel, Kate

Climate impacts have broad economic, health, political, and national security ramifications. Societally relevant impacts are typically farther downstream, are the product of multiple interacting processes, and can arise over small regions and timeframes because their sources are short-term and localized. Short-term forcings (as can be seen in volcanic eruptions, climatic tipping points (e.g., the collapse of rainforests or the disappearance of sea ice), or in increasingly plausible climate interventions) fundamentally possess low signal-to-noise and could benefit from accounting for the multiple conditional processes through which a downstream impact arises. Under the Grand Challenge LDRD CLDERA (CLimate impacts: Discovering Etiology thRough pAthways), we have developed tools to enable downstream impact attribution from geographically and temporally localized source forcings in the climate. CLDERA developed methods that can distinguish how a localized source drives the climate system to respond with particular impacts. The how is embodied in pathways – the spatio-temporally evolving chain of physical processes that connects a source to a series of increasingly distant impacts. Novel analytic methods in pursuit of downstream impact attribution were developed and demonstrated on simulations and observations of the 1991 eruption of Mt. Pinatubo in the Philippines. As described within this report we have • developed stratospheric expertise and aerosol modeling capabilities in E3SM, • created original methods to detect and model pathways from source-to-impact, and • advanced climate attribution through novel methods, cases, and approaches. Further, CLDERA developed a tiered verification process consisting of controlled datasets to prototype, verify, and refine the original method development. CLDERA increased Sandia’s footprint in the climate analytics community and developed new climate collaborations whilst also creating a cadre of climate analysts at Sandia. The products from CLDERA have been extensive with a total of 9 journal articles published, 12 articles submitted and under review, and an additional 8 articles in preparation. We have produced 1750 simulated years and developed 9 code-bases. This report details these accomplishments and serves as a summary of the work completed during the CLDERA Grand Challenge.

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Identifying Northern Hemisphere Stratospheric and Surface Temperature Responses to the Mt. Pinatubo Eruption within E3SMv2-SPA

Ehrmann, Thomas; Wagman, Benjamin M.; Bull, Diana L.; Hillman, Benjamin R.; Hollowed, Joseph; Brown, Hunter Y.; Peterson, Kara J.; Swiler, Laura P.; Watkins, Jerry E.; Hart, Joseph L.

The Mt. Pinatubo eruption on 15 June 1991 is often associated with surface warming in the subsequent Northern Hemisphere winter. Employing E3SMv2 with prognostic aerosol modifications, we generated an ensemble of simulations initialized on 1 June 1991 to limit the intra-ensemble variability at the time of the eruption and a more traditional ensemble representing the full range of intra-ensemble variability. For each ensemble member we generated a paired counterfactual simulation with the Pinatub forcing removed allowing for isolation of the Pinatubo impact. In general, the limited variability ensemble has greater coherence in the Pinatubo impact across ensemble members which leads to more statistically robust signals compared to the full variability ensemble. Stratospheric warming patterns from Pinatubo were approximately zonally symmetric and confined between 30°S and 50°N. Isolating localized surface temperature impacts was more difficult, but the limited variability simulation did identify a preferential region of cooling between 20°S to 50°N.

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Benchmarking the PCMCI Causal Discovery Algorithm for Spatiotemporal Systems

Nichol, J.J.; Weylandt, Robert M.; Smith, Mark A.; Swiler, Laura P.

Causal discovery algorithms construct hypothesized causal graphs that depict causal dependencies among variables in observational data. While powerful, the accuracy of these algorithms is highly sensitive to the underlying dynamics of the system in ways that have not been fully characterized in the literature. In this report, we benchmark the PCMCI causal discovery algorithm in its application to gridded spatiotemporal systems. Effectively computing grid-level causal graphs on large grids will enable analysis of the causal impacts of transient and mobile spatial phenomena in large systems, such as the Earth’s climate. We evaluate the performance of PCMCI with a set of structural causal models, using simulated spatial vector autoregressive processes in one- and two-dimensions. We develop computational and analytical tools for characterizing these processes and their associated causal graphs. Our findings suggest that direct application of PCMCI is not suitable for the analysis of dynamical spatiotemporal gridded systems, such as climatological data, without significant preprocessing and downscaling of the data. PCMCI requires unrealistic sample sizes to achieve acceptable performance on even modestly sized problems and suffers from a notable curse of dimensionality. This work suggests that, even under generous structural assumptions, significant additional algorithmic improvements are needed before causal discovery algorithms can be reliably applied to grid-level outputs of earth system models.

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What can simulation test beds teach us about social science? Results of the ground truth program

Computational and Mathematical Organization Theory

Naugle, Asmeret; Krofcheck, Daniel J.; Warrender, Christina E.; Lakkaraju, Kiran; Swiler, Laura P.; Verzi, Stephen J.; Emery, Benjamin; Murdock, Jaimie; Bernard, Michael; Romero, Vicente J.

The ground truth program used simulations as test beds for social science research methods. The simulations had known ground truth and were capable of producing large amounts of data. This allowed research teams to run experiments and ask questions of these simulations similar to social scientists studying real-world systems, and enabled robust evaluation of their causal inference, prediction, and prescription capabilities. We tested three hypotheses about research effectiveness using data from the ground truth program, specifically looking at the influence of complexity, causal understanding, and data collection on performance. We found some evidence that system complexity and causal understanding influenced research performance, but no evidence that data availability contributed. The ground truth program may be the first robust coupling of simulation test beds with an experimental framework capable of teasing out factors that determine the success of social science research.

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Feedback density and causal complexity of simulation model structure

Journal of Simulation

Naugle, Asmeret; Verzi, Stephen J.; Lakkaraju, Kiran; Swiler, Laura P.; Warrender, Christina E.; Bernard, Michael; Romero, Vicente J.

Measures of simulation model complexity generally focus on outputs; we propose measuring the complexity of a model’s causal structure to gain insight into its fundamental character. This article introduces tools for measuring causal complexity. First, we introduce a method for developing a model’s causal structure diagram, which characterises the causal interactions present in the code. Causal structure diagrams facilitate comparison of simulation models, including those from different paradigms. Next, we develop metrics for evaluating a model’s causal complexity using its causal structure diagram. We discuss cyclomatic complexity as a measure of the intricacy of causal structure and introduce two new metrics that incorporate the concept of feedback, a fundamental component of causal structure. The first new metric introduced here is feedback density, a measure of the cycle-based interconnectedness of causal structure. The second metric combines cyclomatic complexity and feedback density into a comprehensive causal complexity measure. Finally, we demonstrate these complexity metrics on simulation models from multiple paradigms and discuss potential uses and interpretations. These tools enable direct comparison of models across paradigms and provide a mechanism for measuring and discussing complexity based on a model’s fundamental assumptions and design.

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Machine Learning Surrogates of a Fuel Matrix Degradation Process Model for Performance Assessment of a Nuclear Waste Repository

Nuclear Technology

Debusschere, Bert J.; Seidl, D.T.; Berg, Timothy M.; Chang, Kyung W.; Leone, Rosemary C.; Swiler, Laura P.; Mariner, Paul E.

Spent nuclear fuel repository simulations are currently not able to incorporate detailed fuel matrix degradation (FMD) process models due to their computational cost, especially when large numbers of waste packages breach. The current paper uses machine learning to develop artificial neural network and k-nearest neighbor regression surrogate models that approximate the detailed FMD process model while being computationally much faster to evaluate. Using fuel cask temperature, dose rate, and the environmental concentrations of CO32−, O2, Fe2+, and H2 as inputs, these surrogates show good agreement with the FMD process model predictions of the UO2 degradation rate for conditions within the range of the training data. A demonstration in a full-scale shale repository reference case simulation shows that the incorporation of the surrogate models captures local and temporal environmental effects on fuel degradation rates while retaining good computational efficiency.

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Sensitivity analysis of generic deep geologic repository with focus on spatial heterogeneity induced by stochastic fracture network generation

Advances in Water Resources

Brooks, Dusty M.; Swiler, Laura P.; Stein, Emily; Mariner, Paul E.; Basurto, Eduardo; Portone, Teresa; Eckert, Aubrey; Leone, Rosemary C.

Geologic Disposal Safety Assessment Framework is a state-of-the-art simulation software toolkit for probabilistic post-closure performance assessment of systems for deep geologic disposal of nuclear waste developed by the United States Department of Energy. This paper presents a generic reference case and shows how it is being used to develop and demonstrate performance assessment methods within the Geologic Disposal Safety Assessment Framework that mitigate some of the challenges posed by high uncertainty and limited computational resources. Variance-based global sensitivity analysis is applied to assess the effects of spatial heterogeneity using graph-based summary measures for scalar and time-varying quantities of interest. Behavior of the system with respect to spatial heterogeneity is further investigated using ratios of water fluxes. This analysis shows that spatial heterogeneity is a dominant uncertainty in predictions of repository performance which can be identified in global sensitivity analysis using proxy variables derived from graph descriptions of discrete fracture networks. New quantities of interest defined using water fluxes proved useful for better understanding overall system behavior.

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GDSA Framework Development and Process Model Integration FY2022

Mariner, Paul E.; Debusschere, Bert J.; Fukuyama, David E.; Harvey, Jacob; Laforce, Tara C.; Leone, Rosemary C.; Bays, Nathan R.; Swiler, Laura P.; Taconi, Anna M.

The Spent Fuel and Waste Science and Technology (SFWST) Campaign of the U.S. Department of Energy (DOE) Office of Nuclear Energy (NE), Office of Spent Fuel & Waste Disposition (SFWD) is conducting research and development (R&D) on geologic disposal of spent nuclear fuel (SNF) and high-level nuclear waste (HLW). A high priority for SFWST disposal R&D is disposal system modeling (Sassani et al. 2021). The SFWST Geologic Disposal Safety Assessment (GDSA) work package is charged with developing a disposal system modeling and analysis capability for evaluating generic disposal system performance for nuclear waste in geologic media. This report describes fiscal year (FY) 2022 advances of the Geologic Disposal Safety Assessment (GDSA) performance assessment (PA) development groups of the SFWST Campaign. The common mission of these groups is to develop a geologic disposal system modeling capability for nuclear waste that can be used to assess probabilistically the performance of generic disposal options and generic sites. The modeling capability under development is called GDSA Framework (pa.sandia.gov). GDSA Framework is a coordinated set of codes and databases designed for probabilistically simulating the release and transport of disposed radionuclides from a repository to the biosphere for post-closure performance assessment. Primary components of GDSA Framework include PFLOTRAN to simulate the major features, events, and processes (FEPs) over time, Dakota to propagate uncertainty and analyze sensitivities, meshing codes to define the domain, and various other software for rendering properties, processing data, and visualizing results.

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Results 1–25 of 395
Results 1–25 of 395
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