New approaches to preventing and treating infections, particularly of the respiratory tract, are needed. One promising strategy is to reconfigure microbial communities (microbiomes) within the host to improve defense against pathogens. Probiotics and prebiotics for gastrointestinal (GI) infections offer a template for success. We sought to develop comparable countermeasures for respiratory infections. First, we characterized interactions between the airway microbiome and a biodefense-related respiratory pathogen (Burkholderia thailandensis; Bt), using a mouse model of infection. Then, we recovered microbiome constituents from the airway and assessed their ability to re-colonize the airway and protect against respiratory Bt infection. We found that microbiome constituents belonging to Bacillus and related genuses frequently displayed colonization and anti-Bt activity. Comparative growth requirement profiling of these Bacillus strains vs Bt enabled identification of candidate prebiotics. This work serves as proof of concept for airway probiotics, as well as a strong foundation for development of airway prebiotics.
Recent efforts at Sandia such as DataSEA are creating search engines that enable analysts to query the institution’s massive archive of simulation and experiment data. The benefit of this work is that analysts will be able to retrieve all historical information about a system component that the institution has amassed over the years and make better-informed decisions in current work. As DataSEA gains momentum, it faces multiple technical challenges relating to capacity storage. From a raw capacity perspective, data producers will rapidly overwhelm the system with massive amounts of data. From an accessibility perspective, analysts will expect to be able to retrieve any portion of the bulk data, from any system on the enterprise network. Sandia’s Institutional Computing is mitigating storage problems at the enterprise level by procuring new capacity storage systems that can be accessed from anywhere on the enterprise network. These systems use the simple storage service, or S3, API for data transfers. While S3 uses objects instead of files, users can access it from their desktops or Sandia’s high-performance computing (HPC) platforms. S3 is particularly well suited for bulk storage in DataSEA, as datasets can be decomposed into object that can be referenced and retrieved individually, as needed by an analyst. In this report we describe our experiences working with S3 storage and provide information about how developers can leverage Sandia’s current systems. We present performance results from two sets of experiments. First, we measure S3 throughput when exchanging data between four different HPC platforms and two different enterprise S3 storage systems on the Sandia Restricted Network (SRN). Second, we measure the performance of S3 when communicating with a custom-built Ceph storage system that was constructed from HPC components. Overall, while S3 storage is significantly slower than traditional HPC storage, it provides significant accessibility benefits that will be valuable for archiving and exploiting historical data. There are multiple opportunities that arise from this work, including enhancing DataSEA to leverage S3 for bulk storage and adding native S3 support to Sandia’s IOSS library.
The purpose and scope of the viga span tables project for Rachel Wood Consulting (RWC) is focused on producing tabulated beam span tables for three species of wood vigas commonly used in New Mexico to allow producers, designers and builders to incorporate vigas into their building designs in a prescriptive manner similar to the span tables for sawn lumber incorporated into the International Residential Code (IRC) or the International Log Builders Association (ILBA) publication. The information provided in this report and the associated viga span tables also attempts to address and clarify questions raised by RWC during their review of the 2018 Los Alamos National Laboratory (LANL) New Mexico Small Business Assistance (NMSBA) program report by August Mosimann pertaining to span lengths, loading, deflection calculations, and log grading certification prior to submitting the span tables to the Construction Industries Division (CID) of New Mexico.
As part of the development process, scaled testing of wave energy converter devices are necessary to prove a concept, study hydrodynamics, and validate control system approaches. Creating a low-cost, small, lightweight data acquisition system suitable for scaled testing is often a barrier for wave energy converter developers’ ability to test such devices. This paper outlines an open-source solution to these issues, which can be customized based on specific needs. This will help developers with limited resources along a path toward commercialization.