Publications

Results 376–400 of 445

Search results

Jump to search filters

Uncertainty quantification of cinematic imaging for development of predictive simulations of turbulent combustion

Frank, Jonathan H.; Lawson, Matthew; Sargsyan, Khachik; Debusschere, Bert J.; Najm, Habib N.

Recent advances in high frame rate complementary metal-oxide-semiconductor (CMOS) cameras coupled with high repetition rate lasers have enabled laser-based imaging measurements of the temporal evolution of turbulent reacting flows. This measurement capability provides new opportunities for understanding the dynamics of turbulence-chemistry interactions, which is necessary for developing predictive simulations of turbulent combustion. However, quantitative imaging measurements using high frame rate CMOS cameras require careful characterization of the their noise, non-linear response, and variations in this response from pixel to pixel. We develop a noise model and calibration tools to mitigate these problems and to enable quantitative use of CMOS cameras. We have demonstrated proof of principle for image de-noising using both wavelet methods and Bayesian inference. The results offer new approaches for quantitative interpretation of imaging measurements from noisy data acquired with non-linear detectors. These approaches are potentially useful in many areas of scientific research that rely on quantitative imaging measurements.

More Details

Eigenvalue analysis of uncertain ODE systems

Debusschere, Bert J.; Berry, Robert D.; Najm, Habib N.

The Polynomial chaos expansion provides a means of representing any L2 random variable as a sum of polynomials that are orthogonal with respect to a chosen measure. Examples include the Hermite polynomials with Gaussian measure on the real line and the Legendre polynomials with uniform measure on an interval. Polynomial chaos can be used to reformulate an uncertain ODE system, using Galerkin projection, as a new, higher-dimensional, deterministic ODE system which describes the evolution of each mode of the polynomial chaos expansion. It is of interest to explore the eigenstructure of the original and reformulated ODE systems by studying the eigenvalues and eigenvectors of their Jacobians. In this talk, we study the distribution of the eigenvalues of the two Jacobians. We outline in general the location of the eigenvalues of the new system with respect to those of the original system, and examine the effect of expansion order on this distribution.

More Details

Uncertainty quantification in reacting flow

Najm, Habib N.; Berry, Robert D.; Debusschere, Bert J.

Chemically reacting flow models generally involve inputs and parameters that are determined from empirical measurements, and therefore exhibit a certain degree of uncertainty. Estimating the propagation of this uncertainty into computational model output predictions is crucial for purposes of reacting flow model validation, model exploration, as well as design optimization. Recent years have seen great developments in probabilistic methods and tools for efficient uncertainty quantification (UQ) in computational models. These tools are grounded in the use of Polynomial Chaos (PC) expansions for representation of random variables. The utility and effectiveness of PC methods have been demonstrated in a range of physical models, including structural mechanics, transport in porous media, fluid dynamics, aeronautics, heat transfer, and chemically reacting flow. While high-dimensionality remains nominally an ongoing challenge, great strides have been made in dealing with moderate dimensionality along with non-linearity and oscillatory dynamics. In this talk, I will give an overview of UQ in chemical systems. I will cover both: (1) the estimation of uncertain input parameters from empirical data, and (2) the forward propagation of parametric uncertainty to model outputs. I will cover the basics of forward PC UQ methods with examples of their use. I will also highlight the need for accurate estimation of the joint probability density over the uncertain parameters, in order to arrive at meaningful estimates of model output uncertainties. Finally, I will discuss recent developments on the inference of this density given partial information from legacy experiments, in the absence of raw data.

More Details

Bayesian methods for discontinuity detection in climate model predictions

Safta, Cosmin; Debusschere, Bert J.; Najm, Habib N.; Sargsyan, Khachik

Discontinuity detection is an important component in many fields: Image recognition, Digital signal processing, and Climate change research. Current methods shortcomings are: Restricted to one- or two-dimensional setting, Require uniformly spaced and/or dense input data, and Give deterministic answers without quantifying the uncertainty. Spectral methods for Uncertainty Quantification with global, smooth bases are challenged by discontinuities in model simulation results. Domain decomposition reduces the impact of nonlinearities and discontinuities. However, while gaining more smoothness in each subdomain, the current domain refinement methods require prohibitively many simulations. Therefore, detecting discontinuities up front and refining accordingly provides huge improvement to the current methodologies.

More Details

Data-free inference of uncertain model parameters

Debusschere, Bert J.; Najm, Habib N.; Berry, Robert D.; Adalsteinsson, Helgi

It is known that, in general, the correlation structure in the joint distribution of model parameters is critical to the uncertainty analysis of that model. Very often, however, studies in the literature only report nominal values for parameters inferred from data, along with confidence intervals for these parameters, but no details on the correlation or full joint distribution of these parameters. When neither posterior nor data are available, but only summary statistics such as nominal values and confidence intervals, a joint PDF must be chosen. Given the summary statistics it may not be reasonable nor necessary to assume the parameters are independent random variables. We demonstrate, using a Bayesian inference procedure, how to construct a posterior density for the parameters exhibiting self consistent correlations, in the absence of data, given (1) the fit-model, (2) nominal parameter values, (3) bounds on the parameters, and (4) a postulated statistical model, around the fit-model, for the missing data. Our approach ensures external Bayesian updating while marginalizing over possible data realizations. We then address the matching of given parameter bounds through the choice of hyperparameters, which are introduced in postulating the statistical model, but are not given nominal values. We discuss some possible approaches, including (1) inferring them in a separate Bayesian inference loop and (2) optimization. We also perform an empirical evaluation of the algorithm showing the posterior obtained with this data free inference compares well with the true posterior obtained from inference against the full data set.

More Details

Data-free inference of the joint distribution of uncertain model parameters

Berry, Robert D.; Najm, Habib N.; Debusschere, Bert J.; Adalsteinsson, Helgi

It is known that, in general, the correlation structure in the joint distribution of model parameters is critical to the uncertainty analysis of that model. Very often, however, studies in the literature only report nominal values for parameters inferred from data, along with confidence intervals for these parameters, but no details on the correlation or full joint distribution of these parameters. When neither posterior nor data are available, but only summary statistics such as nominal values and confidence intervals, a joint PDF must be chosen. Given the summary statistics it may not be reasonable nor necessary to assume the parameters are independent random variables. We demonstrate, using a Bayesian inference procedure, how to construct a posterior density for the parameters exhibiting self consistent correlations, in the absence of data, given (1) the fit-model, (2) nominal parameter values, (3) bounds on the parameters, and (4) a postulated statistical model, around the fit-model, for the missing data. Our approach ensures external Bayesian updating while marginalizing over possible data realizations. We then address the matching of given parameter bounds through the choice of hyperparameters, which are introduced in postulating the statistical model, but are not given nominal values. We discuss some possible approaches, including (1) inferring them in a separate Bayesian inference loop and (2) optimization. We also perform an empirical evaluation of the algorithm showing the posterior obtained with this data free inference compares well with the true posterior obtained from inference against the full data set.

More Details

Uncertainty quantification in reacting flow

Najm, Habib N.

Chemically reacting flow models generally involve inputs and parameters that are determined from empirical measurements, and therefore exhibit a certain degree of uncertainty. Estimating the propagation of this uncertainty into computational model output predictions is crucial for purposes of reacting flow model validation, model exploration, as well as design optimization. Recent years have seen great developments in probabilistic methods and tools for efficient uncertainty quantification (UQ) in computational models. These tools are grounded in the use of Polynomial Chaos (PC) expansions for representation of random variables. The utility and effectiveness of PC methods have been demonstrated in a range of physical models, including structural mechanics, transport in porous media, fluid dynamics, aeronautics, heat transfer, and chemically reacting flow. While high-dimensionality remains nominally an ongoing challenge, great strides have been made in dealing with moderate dimensionality along with non-linearity and oscillatory dynamics. In this talk, I will give an overview of UQ in chemical systems. I will cover both: (1) the estimation of uncertain input parameters from empirical data, and (2) the forward propagation of parametric uncertainty to model outputs. I will cover the basics of forward PC UQ methods with examples of their use. I will also highlight the need for accurate estimation of the joint probability density over the uncertain parameters, in order to arrive at meaningful estimates of model output uncertainties. Finally, I will discuss recent developments on the inference of this density given partial information from legacy experiments, in the absence of raw data.

More Details

Quantifying prediction fidelity in multiscale multiphysics simulations

Adalsteinsson, Helgi; Debusschere, Bert J.; Najm, Habib N.; Jones, Reese E.; Sargsyan, Khachik

Multiscale multiphysics problems arise in a host of application areas of significant relevance to DOE, including electrical storage systems (membranes and electrodes in fuel cells, batteries, and ultracapacitors), water surety, chemical analysis and detection systems, and surface catalysis. Multiscale methods aim to provide detailed physical insight into these complex systems by incorporating coupled effects of relevant phenomena on all scales. However, many sources of uncertainty and modeling inaccuracies hamper the predictive fidelity of multiscale multiphysics simulations. These include parametric and model uncertainties in the models on all scales, and errors associated with coupling, or information transfer, across scales/physics. This presentation introduces our work on the development of uncertainty quantification methods for spatially decomposed atomistic-to-continuum (A2C) multiscale simulations. The key thrusts of this research effort are: inference of uncertain parameters or observables from experimental or simulation data; propagation of uncertainty through particle models; propagation of uncertainty through continuum models; propagation of information and uncertainty across model/scale interfaces; and numerical and computational analysis and control. To enable the bidirectional coupling between the atomistic and continuum simulations, a general formulation has been developed for the characterization of sampling noise due to intrinsic variability in particle simulations, and for the propagation of both this sampling noise and parametric uncertainties through coupled A2C multiscale simulations. Simplified tests of noise quantification in particle computations are conducted through Bayesian inference of diffusion rates in an idealized isothermal binary material system. A proof of concept is finally presented based on application of the present formulation to the propagation of uncertainties in a model plane Couette flow, where the near wall region is handled with molecular dynamics while the bulk region is handled with continuum methods.

More Details

Uncertainty quantification in the presence of limited climate model data with discontinuities

ICDM Workshops 2009 - IEEE International Conference on Data Mining

Sargsyan, Khachik; Safta, Cosmin; Debusschere, Bert J.; Najm, Habib N.

Uncertainty quantification in climate models is challenged by the sparsity of the available climate data due to the high computational cost of the model runs. Another feature that prevents classical uncertainty analyses from being easily applicable is the bifurcative behavior in the climate data with respect to certain parameters. A typical example is the Meridional Overturning Circulation in the Atlantic Ocean. The maximum overturning stream function exhibits discontinuity across a curve in the space of two uncertain parameters, namely climate sensitivity and CO2 forcing. We develop a methodology that performs uncertainty quantification in this context in the presence of limited data. © 2009 IEEE.

More Details

Uncertainty quantification in the presence of limited climate model data with discontinuities

Sargsyan, Khachik; Safta, Cosmin; Debusschere, Bert J.; Najm, Habib N.

Uncertainty quantification in climate models is challenged by the sparsity of the available climate data due to the high computational cost of the model runs. Another feature that prevents classical uncertainty analyses from being easily applicable is the bifurcative behavior in the climate data with respect to certain parameters. A typical example is the Meridional Overturning Circulation in the Atlantic Ocean. The maximum overturning stream function exhibits discontinuity across a curve in the space of two uncertain parameters, namely climate sensitivity and CO2 forcing. We develop a methodology that performs uncertainty quantification in this context in the presence of limited data.

More Details

Dimensionality reduction and polynomial chaos acceleration of Bayesian inference in inverse problems

Journal of Computational Physics

Marzouk, Youssef M.; Najm, Habib N.

We consider a Bayesian approach to nonlinear inverse problems in which the unknown quantity is a spatial or temporal field, endowed with a hierarchical Gaussian process prior. Computational challenges in this construction arise from the need for repeated evaluations of the forward model (e.g., in the context of Markov chain Monte Carlo) and are compounded by high dimensionality of the posterior. We address these challenges by introducing truncated Karhunen-Loève expansions, based on the prior distribution, to efficiently parameterize the unknown field and to specify a stochastic forward problem whose solution captures that of the deterministic forward model over the support of the prior. We seek a solution of this problem using Galerkin projection on a polynomial chaos basis, and use the solution to construct a reduced-dimensionality surrogate posterior density that is inexpensive to evaluate. We demonstrate the formulation on a transient diffusion equation with prescribed source terms, inferring the spatially-varying diffusivity of the medium from limited and noisy data. © 2008 Elsevier Inc.

More Details

Time integration of reacting flows with CSP tabulation

Debusschere, Bert J.; Najm, Habib N.

This paper presents recent progress on the use of Computational Singular Perturbation (CSP) techniques for time integration of stiff chemical systems. The CSP integration approach removes fast time scales from the reaction system, thereby enabling integration with explicit time stepping algorithms. For further efficiency improvements, a tabulation strategy was developed to allow reuse of the relevant CSP quantities. This paper outlines the method and demonstrates its use on the simulation of hydrogen-air ignition.

More Details

Skeletal mechanism generation with CSP and validation for premixed n-heptane flames

Proceedings of the Combustion Institute

Prager, Jens; Najm, Habib N.; Valorani, Mauro; Goussis, Dimitris A.

An automated procedure has been previously developed to generate simplified skeletal reaction mechanisms for the combustion of n-heptane/air mixtures at equivalence ratios between 0.5 and 2.0 and different pressures. The algorithm is based on a Computational Singular Perturbation (CSP)-generated database of importance indices computed from homogeneous n-heptane/air ignition solutions. In this paper, we examine the accuracy of these simplified mechanisms when they are used for modeling laminar n-heptane/air premixed flames. The objective is to evaluate the accuracy of the simplified models when transport processes lead to local mixture compositions that are not necessarily part of the comprehensive homogeneous ignition databases. The detailed mechanism was developed by Curran et al. and involves 560 species and 2538 reactions. The smallest skeletal mechanism considered consists of 66 species and 326 reactions. We show that these skeletal mechanisms yield good agreement with the detailed model for premixed n-heptane flames, over a wide range of equivalence ratios and pressures, for global flame properties. They also exhibit good accuracy in predicting certain elements of internal flame structure, especially the profiles of temperature and major chemical species. On the other hand, we find larger errors in the concentrations of many minor/radical species, particularly in the region where low-temperature chemistry plays a significant role. We also observe that the low-temperature chemistry of n-heptane can play an important role at very lean or very rich mixtures, reaching these limits first at high pressure. This has implications to numerical simulations of non-premixed flames where these lean and rich regions occur naturally. © 2009 The Combustion Institute. Published by Elsevier Inc. All rights reserved.

More Details

Identification of viruses using microfluidic protein profiling and bayesian classification

Analytical Chemistry

Fruetel, Julia A.; West, Jason A.A.; Debusschere, Bert J.; Hukari, Kyle; Lane, Todd; Najm, Habib N.; Ortega, Jose; Renzi, Ronald F.; Shokair, Isaac R.; Vandernoot, Victoria A.

We present a rapid method for the identification of viruses using microfluidic chip gel electrophoresis (CGE) of high-copy number proteins to generate unique protein profiles. Viral proteins are solubilized by heating at 95°C in borate buffer containing detergent (5 min), then labeled with fluorescamine dye (10 s), and analyzed using the μChemLab CGE system (5 min). Analyses of closely related T2 and T4 bacteriophage demonstrate sufficient assay sensitivity and peak resolution to distinguish the two phage. CGE analyses of four additional viruses - MS2 bacteriophage, Epstein - Barr, respiratory syncytial, and vaccinia viruses - demonstrate reproducible and visually distinct protein profiles. To evaluate the suitability of the method for unique identification of viruses, we employed a Bayesian classification approach. Using a subset of 126 replicate electropherograms of the six viruses and phage for training purposes, successful classification with non-training data was 66/69 or 95% with no false positives. The classification method is based on a single attribute (elution time), although other attributes such as peak width, peak amplitude, or peak shape could be incorporated and may improve performance further. The encouraging results suggest a rapid and simple way to identify viruses without requiring specialty reagents such as PCR probes and antibodies. © 2008 American Chemical Society.

More Details
Results 376–400 of 445
Results 376–400 of 445
Top