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Temperature imaging in nonpremixed flames by joint filtered Rayleigh and Raman scattering

Applied Optics

Kearney, Sean P.; Schefer, Robert W.; Beresh, Steven J.; Grasser, Thomas W.

Joint fuel Raman and filtered Rayleigh-scattering (FRS) imaging is demonstrated in a laminar methane-air diffusion flame. These experiments are, to our knowledge, the first reported extension of the FRS technique to nonpremixed combustion. This joint imaging approach allows for correction of the FRS images for the large variations in Rayleigh cross section that occur in diffusion flames and for a secondary measurement of fuel mole fraction. The temperature-dependent filtered Rayleigh cross sections are computed with a six-moment kinetic model for calculation of major-species Rayleigh-Brillouin line shapes and a flamelet-based model for physically judicious estimates of gas-phase chemical composition. Shot-averaged temperatures, fuel mole fractions, and fuel number densities from steady and vortex-strained diffusion flames stabilized on a Wolfhard-Parker slot burner are presented, and a detailed uncertainty analysis reveals that the FRS-measured temperatures are accurate to within ±4.5 to 6% of the local absolute temperature. © 2005 Optical Society of America.

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An evaluation of actual and simulated smoke properties

Fire and Materials

Suo-Anttila, Jill M.; Gill, Walt; Gritzo, Louis A.; Blake, David

Federal regulations require that aircraft cargo compartment smoke detection systems be certified by testing their operation in flight. For safety reasons, only simulated smoke sources are permitted in these certification tests. To provide insight into smoke detection certification in cargo compartments, this research investigates the morphology, transport and optical properties of actual and simulated smoke sources. Experimental data show the morphology of the particulate in smoke from flaming fires is considerably different from simulated smoke. Although the detection of smoldering fires is important as well, only a qualitative assessment and comparison of smoldering sources was possible; therefore, efforts were concentrated on the quantitative comparison of smoke from flaming fires and smoke generators. The particulate for all three different flaming fires was solid with similar morphological properties. Simulated smoke was composed of relatively large liquid droplets, and considerably different size droplets can be produced using a single machine. Transport behavior modeling showed that both the actual and simulated smoke particulates are sufficiently small to follow the overall gas flow. However, actual smoke transport will be buoyancy driven due to the increased temperature, while the simulated smoke temperature is typically low and the release may be momentum driven. The morphology of the actual and simulated smoke were then used to calculate their optical properties. In contrast to the actual smoke from a flaming fire, which is dominated by absorption, all of the extinction for the simulated smoke is due to scattering. This difference could have an impact on detection criteria and hence the alarm time for photoelectic smoke detectors since they alarm based on the scattering properties of the smoke. Copyright © 2004 John Wiley & Sons, Ltd.

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Innovative applications of energy storage in a restructured electricity marketplace : Phase III final report : a study for the DOE Energy Storage Systems Program

Butler, Paul C.

This report describes Phase III of a project entitled Innovative Applications of Energy Storage in a Restructured Electricity Marketplace. For this study, the authors assumed that it is feasible to operate an energy storage plant simultaneously for two primary applications: (1) energy arbitrage, i.e., buy-low-sell-high, and (2) to reduce peak loads in utility ''hot spots'' such that the utility can defer their need to upgrade transmission and distribution (T&D) equipment. The benefits from the arbitrage plus T&D deferral applications were estimated for five cases based on the specific requirements of two large utilities operating in the Eastern U.S. A number of parameters were estimated for the storage plant ratings required to serve the combined application: power output (capacity) and energy discharge duration (energy storage). In addition to estimating the various financial expenditures and the value of electricity that could be realized in the marketplace, technical characteristics required for grid-connected distributed energy storage used for capacity deferral were also explored.

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Accounting for geophysical information in geostatistical characterization of unexploded ordnance (UXO) sites

Environmental and Ecological Statistics

Saito, Hirotaka; Mckenna, Sean A.; Goovaerts, Pierre

Efficient and reliable unexploded ordnance (UXO) site characterization is needed for decisions regarding future land use. There are several types of data available at UXO sites and geophysical signal maps are one of the most valuable sources of information. Incorporation of such information into site characterization requires a flexible and reliable methodology. Geostatistics allows one to account for exhaustive secondary information (i.e.,, known at every location within the field) in many different ways. Kriging and logistic regression were combined to map the probability of occurrence of at least one geophysical anomaly of interest, such as UXO, from a limited number of indicator data. Logistic regression is used to derive the trend from a geophysical signal map, and kriged residuals are added to the trend to estimate the probabilities of the presence of UXO at unsampled locations (simple kriging with varying local means or SKlm). Each location is identified for further remedial action if the estimated probability is greater than a given threshold. The technique is illustrated using a hypothetical UXO site generated by a UXO simulator, and a corresponding geophysical signal map. Indicator data are collected along two transects located within the site. Classification performances are then assessed by computing proportions of correct classification, false positive, false negative, and Kappa statistics. Two common approaches, one of which does not take any secondary information into account (ordinary indicator kriging) and a variant of common cokriging (collocated cokriging), were used for comparison purposes. Results indicate that accounting for exhaustive secondary information improves the overall characterization of UXO sites if an appropriate methodology, SKlm in this case, is used. © Springer Science+Business Media, Inc. 2005.

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Measurements of carbon, deuterium and boron deposition in DIII-D

Journal of Nuclear Materials

Wampler, W.R.; Allen, S.L.; McLean, A.G.; West, W.P.

An experiment was recently conducted in DIII-D in which 13C methane (13CH4) was injected from the upper divertor plenum into 22 identical lower single null divertor L-mode plasmas. Twenty-nine graphite tiles were subsequently removed and analyzed to determine the spatial distribution of 13C deposited on the main chamber wall and divertor. 13C coverage was mapped by ion beam analysis using the 13C(3He, p)15N nuclear reaction. This technique also measures deuterium, boron and 12C content in the near-surface region of the tiles. The measurements show the 13C is deposited mainly at the inner divertor. © 2004 Elsevier B.V. All rights reserved.

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Far scrape-off layer and near wall plasma studies in DIII-D

Journal of Nuclear Materials

Rudakov, D.L.; Boedo, J.A.; Moyer, R.A.; Brooks, N.H.; Doerner, R.P.; Evans, T.E.; Fenstermacher, M.E.; Groth, M.; Hollmann, E.M.; Krasheninnikov, S.; Lasnier, C.J.; Mahdavi, M.A.; McKee, G.R.; McLean, A.; Stangeby, P.C.; Wampler, W.R.; Watkins, J.G.; West, W.P.; Whyte, D.G.; Wong, C.P.C.

Far scrape-off layer (SOL) plasma parameters in DIII-D depend strongly on the discharge density and confinement regime. In L-mode, cross-field transport increases with the average discharge density and elevates the far SOL density, thus increasing plasma-wall contact. Far SOL density near the low field side (LFS) of the main chamber wall also increases with decreasing plasma current and with decreasing outer wall gap. In H-mode, between edge localized modes (ELMs), plasma-wall contact is weaker than in L-mode. During ELMs plasma fluxes to the LFS wall increase to, or above the L-mode levels. A large fraction of the net cross-field fluxes is convected through the SOL by large amplitude intermittent transport events. In high-density L-mode and during ELMs in H-mode, intermittent events propagate all the way to the LFS wall and may cause sputtering. © 2004 Elsevier B.V. All rights reserved.

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OEDGE modeling of 13C deposition in the inner divertor of DIII-D

Journal of Nuclear Materials

Elder, J.D.; Stangeby, P.C.; Whyte, D.G.; Allen, S.L.; McLean, A.; Boedo, J.A.; Bray, B.D.; Brooks, N.H.; Fenstermacher, M.E.; Groth, M.; Lasnier, C.J.; Lisgo, S.; Rudakov, D.L.; Wampler, W.R.; Watkins, J.G.; West, W.P.

Use of carbon in tokamaks leads to a major tritium retention issue due to co-deposition. To investigate this process a low power L-mode experiment was performed on DIII-D in which 13CH4 was puffed into the main vessel through the toroidally-symmetric pumping plenum at the top of lower single-null discharges. Subsequently, the 13C content of tiles taken from the vessel wall was measured. The interpretive OEDGE code was used to model the results. It was found that the 13C deposition pattern is controlled by: (a) source strength of 13C+, (b) Δrs, radial location of the 13C+ source, (c) D⊥, (d) M∥, the scrape-off layer parallel Mach number. Best agreement was found for (a) ∼50% conversion efficiency 13CH 4 → 13C+, (b) Δrs, ∼+3.5 cm (outboard of separatrix) near 13CH4 injection location, (c) D⊥ ∼ 0.3 m2/s, (d) M∥∼ 0.4 toward inside. © 2004 Elsevier B.V. All rights reserved.

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Time resolved deposition measurements in NSTX

Journal of Nuclear Materials

Skinner, C.H.; Kugel, H.; Roquemore, A.L.; Hogan, J.; Wampler, W.R.

Time-resolved measurements of deposition in current tokamaks are crucial to gain a predictive understanding of deposition with a view to mitigating tritium retention and deposition on diagnostic mirrors expected in next-step devices. Two quartz crystal microbalances have been installed on NSTX at a location 0.77 m outside the last closed flux surface. This configuration mimics a typical diagnostic window or mirror. The deposits were analyzed ex-situ and found to be dominantly carbon, oxygen and deuterium. A rear facing quartz crystal recorded deposition of lower sticking probability molecules at 10% of the rate of the front facing one. Time resolved measurements over a 4-week period with 497 discharges, recorded 29.2 μg/cm2 of deposition, however surprisingly, 15.9 μg/cm2 of material loss occurred at 7 discharges. The net deposited mass of 13.3 μg/cm2 matched the mass of 13.5 μg/cm2 measured independently by ion beam analysis. Monte Carlo modeling suggests that transient processes are likely to dominate the deposition. © 2004 Elsevier B.V. All rights reserved.

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Robust hermetic packaging techniques for MEMS integrated microsystems

Oliver, Andrew D.

This work is the result of a Sandia National Laboratories LDRD funded fellowship at the University of Michigan. Although, guidance and suggestions were offered by Sandia, the work contained here is primarily the work of Brian H. Stark, and his advisor, Professor Khalil Najafi. Junseok Chae, Andrew Kuo, and their coworkers at the University of Michigan helped to record some of the data. The following is an abstract of their work. We have developed a vacuum packaging technology using a thick nickel film to seal MEMS structures at the wafer level. The package is fabricated in a three-mask process by electroplating a 40 micro-meter thick nickel film over an 8 micro-meter sacrificial photoresist that is removed prior to package sealing. Implementation of electrical feedthroughs in this process requires no planarization. The large release channel enables an 800x800 micro-meter package to be released in less than three hours. Several mechanisms, based upon localized melting and lead/tin solder bumping, for sealing the release channel have been investigated. We have also developed Pirani gauges, integrated with this package, which can be used to establish the hermeticity of the different sealing technologies. They have measured a sealing pressure of approximately 1.5 Torr. Our work differs from previous Pirani gauges in that we utilize a novel doubly anchored structure that stiffens the structural membrane while not substantially degrading performance in order to measure fine leak rates.

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Multivariate statistical analysis of concatenated time-of-flight secondary ion mass spectrometry spectral images. Complete description of the sample with one analysis

Analytical Chemistry

Smentkowski, V.S.; Keenan, Michael R.; Ohlhausen, J.A.; Kotula, Paul G.

Time-of-flight secondary ion mass spectrometry (TOF-SIMS) instruments are capable of saving an entire mass spectrum at each pixel of an image, allowing for retrospective analysis of masses that were not selected for analysis during data collection. These TOF-SIMS spectral images contain a wealth of information, but few tools are available to assist the analyst in visualizing the entire raw data set and as a result, most of the data are not analyzed. Automated, nonbiased, multivariate statistical analysis (MVSA) techniques are useful for converting the massive amount of data into a smaller number of chemical components (spectra and images) that are needed to fully describe the TOF-SIMS measurement. Many samples require two back-to-back TOF-SIMS measurements in order to fully characterize the sample, one measurement of the fraction of positively charged secondary ions (positive ion fraction) and one measurement of the fraction of negatively charged secondary ions (negative ion fraction). Each measurement then needs to be individually evaluated. In this paper, we report the first MVSA analysis of a concatenated TOF-SIMS date set comprising positive ion and negative ion spectral images collected on the same region of a sample. MVSA of concatenated data sets provides results that are intuitive and fully describe the sample. The analytical insight provided by MVSA of the concatenated data set was not obtained when either polarity data set was analyzed separately. © 2005 American Chemical Society.

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Microsystem strategies for sample preparation in biological detection

James, Conrad D.; Galambos, Paul; Okandan, Murat O.; Brozik, Susan M.; Manginell, Ronald P.

The objective of this LDRD was to develop microdevice strategies for dealing with samples to be examined in biological detection systems. This includes three sub-components: namely, microdevice fabrication, sample delivery to the microdevice, and sample processing within the microdevice. The first component of this work focused on utilizing Sandia's surface micromachining technology to fabricate small volume (nanoliter) fluidic systems for processing small quantities of biological samples. The next component was to develop interfaces for the surface-micromachined silicon devices. We partnered with Micronics, a commercial company, to produce fluidic manifolds for sample delivery to our silicon devices. Pressure testing was completed to examine the strength of the bond between the pressure-sensitive adhesive layer and the silicon chip. We are also pursuing several other methods, both in house and external, to develop polymer-based fluidic manifolds for packaging silicon-based microfluidic devices. The second component, sample processing, is divided into two sub-tasks: cell collection and cell lysis. Cell collection was achieved using dielectrophoresis, which employs AC fields to collect cells at energized microelectrodes, while rejecting non-cellular particles. Both live and dead Staph. aureus bacteria have been collected using RF frequency dielectrophoresis. Bacteria have been separated from polystyrene microspheres using frequency-shifting dielectrophoresis. Computational modeling was performed to optimize device separation performance, and to predict particle response to the dielectrophoretic traps. Cell lysis is continuing to be pursued using microactuators to mechanically disrupt cell membranes. Novel thermal actuators, which can generate larger forces than previously tested electrostatic actuators, have been incorporated with and tested with cell lysis devices. Significant cell membrane distortion has been observed, but more experiments need to be conducted to determine the effects of the observed distortion on membrane integrity and cell viability. Finally, we are using a commercial PCR DNA amplification system to determine the limits of detectable sample size, and to examine the amplification of DNA bound to microspheres. Our objective is to use microspheres as capture-and-carry chaperones for small molecules such as DNA and proteins, enabling the capture and concentration of the small molecules using dielectrophoresis. Current tests demonstrated amplification of DNA bound to micron-sized polystyrene microspheres using 20-50 microliter volume size reactions.

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Magnetophoretic bead trapping in a high-flowrate biological detection system

James, Conrad D.; Rahimian, Kamyar R.; Clem, Paul G.; Derzon, Mark S.; Hopkins, Matthew M.

This report contains the summary of the 'Magnetophoretic Bead Trapping in a High-Flowrate Biological Detection System' LDRD project 74795. The objective of this project is to develop a novel biodetection system for high-throughput sample analysis. The chief application of this system is in detection of very low concentrations of target molecules from a complex liquid solution containing many different constituents--some of which may interfere with identification of the target molecule. The system is also designed to handle air sampling by using an aerosol system (for instance a WESP - Wet Electro-Static Precipitator, or an impact spray system) to get air sample constituents into the liquid volume. The system described herein automatically takes the raw liquid sample, whether air converted or initially liquid matrix, and mixes in magnetic detector beads that capture the targets of interest and then performs the sample cleanup function, allowing increased sensitivity and eliminating most false positives and false negatives at a downstream detector. The surfaces of the beads can be functionalized in a variety of ways in order to maximize the number of targets to be captured and concentrated. Bacteria and viruses are captured using antibodies to surface proteins on bacterial cell walls or viral particle coats. In combination with a cell lysis or PCR (Polymerase Chain Reaction), the beads can be used as a DNA or RNA probe to capture nucleic acid patterns of interest. The sample cleanup capability of this system would allow different raw biological samples, such as blood or saliva to be analyzed for the presence of different infectious agents (e.g. smallpox or SARS). For future studies, we envision functionalizing bead surfaces to bind to chemical weapons agents, radio-isotopes, and explosives. The two main objectives of this project were to explore methods for enhancing the mixing of the capture microspheres in the sample, and to develop a novel high-throughput magnetic microsphere trap. We have developed a novel technique using the magnetic capture microspheres as 'stirrer bars' in a fluid sample to enhance target binding to the microsphere surfaces. We have also made progress in developing a polymer-MEMS electromagnet for trapping magnetic spheres in a high-flowrate fluid format.

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Development of an efficient large-aperture high damage-threshold sol-gel diffraction grating

Rambo, Patrick K.; Schwarz, Jens S.; Smith, Ian C.; Ashley, Carol S.; Branson, Eric D.; Dunphy, Darren R.; Cook, Adam W.; Reed, Scott T.; Johnson, William Arthur.

In order to develop the next generation of high peak intensity lasers, new grating technology providing higher damage thresholds and large apertures is required. The current assumption is that this technical innovation will be multilayer dielectric gratings, wherein the uppermost layer of a thin film mirror is etched to create the desired binary phase grating. A variant of this is explored with the upper grating layer being a lower density gelatin-based volume phase grating in either sol-gel or dichromated gelatin. One key benefit is the elimination of the etching step.

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Microcalibrator system for chemical signature and reagent delivery

Simonson, Robert J.; Rawlinson, Kim S.; Robinson, Alex L.; Ellison, Jennifer A.; Staton, Alan W.; Manginell, Ronald P.; Adkins, Douglas R.; Sokolowski, Sara S.; Hance, Bradley G.

Networked systems of low-cost, small, integrable chemical sensors will enable monitoring of Nonproliferation and Materials Control targets and chemical weapons threats. Sandia-designed prototype chemical sensor systems are undergoing extended field testing supported by DOE and other government agencies. A required surety component will be verification of microanalytical system performance, which can be achieved by providing a programmable source of chemical signature(s) for autonomous calibration of analytical systems. In addition, such a controlled chemical source could be used to dispense microaliquots of derivatization reagents, extending the analysis capability of chemical sensors to a wider range of targets. We have developed a microfabricated system for controlled release of selected compounds (calibrants) into the analytical stream of microsensor systems. To minimize pumping and valve requirements of microfluidic systems, and to avoid degradation issues associated with storage of dilute solutions, we have utilized thermally labile organic salts as solid-phase reservoir materials. Reproducible deposition of tetrapropyl ammonium hydroxide onto arrays of microfabricated heating elements can provide a pair of calibration marker compounds (one fast and one slow-eluting compound) for GC analyses. The use of this microaliquot gas source array for hydrogen generation is currently under further development. The goal of the latter effort will be to provide a source of high-pressure, low viscosity GC carrier gas for Sandia's next-generation microfabricated gas-phase chemical analysis systems.

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Final report to NASA JSC : thermal abuse performance of MOLI, Panasonic and Sanyo 18650 Li-ion cells

Roth, Emanuel P.

Thermal property measurements of 18650 cells for the Space Shuttle Orbiter Advanced Hydraulic Power System (AHPS, formerly known as EAPU) have been performed. Cells were measured from three commercial manufacturers: E-One MOLI (12 cells), Panasonic (5 cells) and Sanyo (5 cells). Thermal property measurements of the MOLI 18650 cells included measurements of specific heat, self discharge (microcalorimetry), overcharge response and thermal runaway by accelerating rate calorimetry (ARC). The Panasonic and Sanyo cells were measured only for thermal runaway response in the ARC at increasing states of charge (3.8V, 4.0V, 4.2V, 4.3V).

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Evaluation of battery/microturbine hybrid energy storage technologies at the University of Maryland :a study for the DOE Energy Storage Systems Program

De Anda, Mindi F.; Fall, Ndeye K.

This study describes the technical and economic benefits derived from adding an energy storage component to an existing building cooling, heating, and power system that uses microturbine generation to augment utility-provided power. Three different types of battery energy storage were evaluated: flooded lead-acid, valve-regulated lead-acid, and zinc/bromine. Additionally, the economic advantages of hybrid generation/storage systems were evaluated for a representative range of utility tariffs. The analysis was done using the Distributed Energy Technology Simulator developed for the Energy Storage Systems Program at Sandia National Laboratories by Energetics, Inc. The study was sponsored by the U.S. DOE Energy Storage Systems Program through Sandia National Laboratories and was performed in coordination with the University of Maryland's Center for Environmental Energy Engineering.

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Restart of the chemical preparation process for the fabrication of ZnO varistors for ferroelectric neutron generator power supplies

Lockwood, Steven J.

To date, all varistors used in ferroelectric neutron generators have been supplied from a single, proprietary source, General Electric Corporate Research and Development (GE CR&D). To protect against the vulnerability of a single source, Sandia initiated a program in the early 1980's to develop a second source for this material. A chemical preparation process for making homogeneous, high purity ZnO-based varistor powder was generated, scaled to production quantities, and transferred to external suppliers. In 1992, the chem-prep varistor program was suspended when it appeared there was sufficient inventory of GE CR&D material to supply ferroelectric neutron generator production for many years. In 1999, neutron generator production schedules increased substantially, resulting in a predicted exhaustion of the existing supply of varistor material within five years. The chem-prep program was restarted in January, 2000. The goals of the program were to (1) duplicate the chem-prep powder synthesis process that had been qualified for WR production, (2) demonstrate sintered billets from the chem-prep powder met requirements, (3) develop a process for rod fabrication and demonstrate that all component specifications could be met, and (4) optimize the process from powder synthesis through component fabrication for full-scale production. The first three of these goals have been met and are discussed in this report. A facility for the fabrication of production quantities of chem-prep powder has been established. All batches since the restart have met compositional requirements, but differences in sintering behavior between the original process and the restarted process were noted. Investigation into the equipment, precipitant stoichiometry, and powder processing procedures were not able to resolve the discrepancies. It was determined that the restarted process, which incorporated Na doping for electrical stability (a process that was not introduced until the end of the initial program and had not been investigated for processing effects), was responsible for the differences. Rod components fabricated since the restart have met requirements and have performed at a level comparable to chem-prep rods from the original program and GE CR&D rods currently in production.

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An immunological basis for high-reliability systems control

Amai, Wendy; Walther, Eleanor A.

This reports describes the successful extension of artificial immune systems from the domain of computer security to the domain of real time control systems for robotic vehicles. A biologically-inspired computer immune system was added to the control system of two different mobile robots. As an additional layer in a multi-layered approach, the immune system is complementary to traditional error detection and error handling techniques. This can be thought of as biologically-inspired defense in depth. We demonstrated an immune system can be added with very little application developer effort, resulting in little to no performance impact. The methods described here are extensible to any system that processes a sequence of data through a software interface.

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Parameter identification for the electrical modeling of semiconductor bridges

Gray, Genetha A.

Semiconductor bridges (SCBs) are commonly used as initiators for explosive and pyrotechnic devices. Their advantages include reduced voltage and energy requirements and exceptional safety features. Moreover, the design of systems which implement SCBs can be expedited using electrical simulation software. Successful use of this software requires that certain parameters be correctly chosen. In this paper, we explain how these parameters can be identified using optimization. We describe the problem focusing on the application of a direct optimization method for its solution, and present some numerical results.

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Diamond-like nanocomposite coatings for LIGA-fabricated nickel alloy parts

Prasad, Somuri V.

A commercial plasma enhanced chemical vapor deposition (PECVD) technique with planetary substrate rotation was used to apply a thin (200-400 nm thick) conformal diamond-like carbon (DLC) coating (known as a diamond-like nanocomposite (DLN)) on LIGA fabricated Ni-Mn alloy parts. The PECVD technique is known to overcome the drawbacks associated with the line-of-sight nature of physical vapor deposition (PVD) and substrate heating inherent with traditional chemical vapor deposition (CVD). The purpose of the present study is to characterize the coverage, adhesion, and tribological (friction and wear) behavior of DLN coatings applied to planar and sidewall surfaces of small featured LIGA Ni-Mn fabricated parts, e.g. 280 {micro}m thick sidewalls. Friction and wear tests were performed in dry nitrogen, dry air, and air with 50% RH at Hertzian contact pressures ranging from 0.3 to 0.6 GPa. The friction coefficient of bare Ni-Mn alloy was determined to be 0.9. In contrast, low friction coefficients ({approx}0.02 in dry nitrogen and {approx}0.2 in 50% RH air) and minimal amount of wear were exhibited for the DLN coated LIGA Ni-Mn alloy parts and test coupons. This behavior was due to the ability of the coating to transfer to the rubbing counterface providing low interfacial shear at the sliding contact; resultantly, coating one surface was adequate for low friction and wear. In addition, a 30 nm thick titanium bond layer was determined to be necessary for good adhesion of DLN coating to Ni-Mn alloy substrates. Raman spectroscopy and cross-sectional SEM with energy dispersive x-ray analysis revealed that the DLN coatings deposited by the PECVD with planetary substrate rotation covered both the planar and sidewall surfaces of LIGA fabricated parts, as well as narrow holes of 300 {micro}m (0.012 inch) diameter.

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Deciphering the genetic regulatory code using an inverse error control coding framework

May, Elebeoba E.; Johnston, Anna M.; Watson, Jean-Paul W.; Hart, William E.; Rintoul, Mark D.

We have found that developing a computational framework for reconstructing error control codes for engineered data and ultimately for deciphering genetic regulatory coding sequences is a challenging and uncharted area that will require advances in computational technology for exact solutions. Although exact solutions are desired, computational approaches that yield plausible solutions would be considered sufficient as a proof of concept to the feasibility of reverse engineering error control codes and the possibility of developing a quantitative model for understanding and engineering genetic regulation. Such evidence would help move the idea of reconstructing error control codes for engineered and biological systems from the high risk high payoff realm into the highly probable high payoff domain. Additionally this work will impact biological sensor development and the ability to model and ultimately develop defense mechanisms against bioagents that can be engineered to cause catastrophic damage. Understanding how biological organisms are able to communicate their genetic message efficiently in the presence of noise can improve our current communication protocols, a continuing research interest. Towards this end, project goals include: (1) Develop parameter estimation methods for n for block codes and for n, k, and m for convolutional codes. Use methods to determine error control (EC) code parameters for gene regulatory sequence. (2) Develop an evolutionary computing computational framework for near-optimal solutions to the algebraic code reconstruction problem. Method will be tested on engineered and biological sequences.

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Results 85051–85075 of 96,771
Results 85051–85075 of 96,771