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Statistical models of dengue fever

Communications in Computer and Information Science

Link, Hamilton E.; Richter, Samuel N.; Leung, Vitus J.; Brost, Randolph; Phillips, Cynthia A.; Staid, Andrea

We use Bayesian data analysis to predict dengue fever outbreaks and quantify the link between outbreaks and meteorological precursors tied to the breeding conditions of vector mosquitos. We use Hamiltonian Monte Carlo sampling to estimate a seasonal Gaussian process modeling infection rate, and aperiodic basis coefficients for the rate of an “outbreak level” of infection beyond seasonal trends across two separate regions. We use this outbreak level to estimate an autoregressive moving average (ARMA) model from which we extrapolate a forecast. We show that the resulting model has useful forecasting power in the 6–8 week range. The forecasts are not significantly more accurate with the inclusion of meteorological covariates than with infection trends alone.

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Adverse Event Prediction Using Graph-Augmented Temporal Analysis (Final Report)

Brost, Randolph; Carrier, Erin E.; Carroll, Michelle J.; Groth, Katrina M.; Kegelmeyer, William P.; Leung, Vitus J.; Link, Hamilton E.; Patterson, Andrew J.; Phillips, Cynthia A.; Richter, Samuel; Robinson, David G.; Staid, Andrea; Woodbridge, Diane M.K.

This report summarizes the work performed under the Sandia LDRD project "Adverse Event Prediction Using Graph-Augmented Temporal Analysis." The goal of the project was to develop a method for analyzing multiple time-series data streams to identify precursors providing advance warning of the potential occurrence of events of interest. The proposed approach combined temporal analysis of each data stream with reasoning about relationships between data streams using a geospatial-temporal semantic graph. This class of problems is relevant to several important topics of national interest. In the course of this work we developed new temporal analysis techniques, including temporal analysis using Markov Chain Monte Carlo techniques, temporal shift algorithms to refine forecasts, and a version of Ripley's K-function extended to support temporal precursor identification. This report summarizes the project's major accomplishments, and gathers the abstracts and references for the publication sub-missions and reports that were prepared as part of this work. We then describe work in progress that is not yet ready for publication.

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Eyes On the Ground: Final Report

Brost, Randolph; Little, Charles Q.; Mcdaniel, Michael; Peter-Stein, Natacha; Wade, James R.

This report summarizes the work performed under the Sandia LDRD project "Eyes on the Ground: Visual Verification for On-Site Inspection." The goal of the project was to develop methods and tools to assist an IAEA inspector in assessing visual and other information encountered during an inspection. Effective IAEA inspections are key to verifying states' compliance with nuclear non-proliferation treaties. In the course of this work we developed a taxonomy of candidate inspector assistance tasks, selected key tasks to focus on, identified hardware and software solution approaches, and made progress in implementing them. In particular, we demonstrated the use of multiple types of 3-d scanning technology applied to simulated inspection environments, and implemented a preliminary prototype of a novel inspector assistance tool. This report summarizes the project's major accomplishments, and gathers the abstracts and references for the publication and reports that were prepared as part of this work. We then describe work in progress that is not yet ready for publication. Approved for public release; further dissemination unlimited.

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Eyes On the Ground (Final Report)

Brost, Randolph; Little, Charles Q.; Mcdaniel, Michael; Peter-Stein, Natacha; Wade, James R.

This report summarizes the work performed under the Sandia LDRD project "Eyes on the Ground: Visual Verification for On-Site Inspection." The goal of the project was to develop methods and tools to assist an IAEA inspector in assessing visual and other information encountered during an inspection. Effective IAEA inspections are key to verifying states' compliance with nuclear non-proliferation treaties. In the course of this work we developed a taxonomy of candidate inspector assistance tasks, selected key tasks to focus on, identified hardware and software solution approaches, and made progress in implementing them. In particular, we demonstrated the use of multiple types of 3-d scanning technology applied to simulated inspection environments, and implemented a preliminary prototype of a novel inspector assistance tool. This report summarizes the project's major accomplishments, and gathers the abstracts and references for the publication and reports that were prepared as part of this work. We then describe work in progress that is not yet ready for publication. Approved for public release; further dissemination unlimited.

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Eyes On the Ground: Path Forward Analysis

Brost, Randolph; Little, Charles Q.; Peter-Stein, Natacha; Wade, James R.

A previous report assesses our progress to date on the Eyes On the Ground project, and reviews lessons learned. In this report, we address the implications of those lessons in defining the most productive path forward for the remainder of the project. We propose two main concepts: Interactive Diagnosis and Model-Driven Assistance. Among these, the Model-Driven Assistance concept appears the most promising. The Model-Driven Assistance concept is based on an approximate but useful model of a facility, which provides a unified representation for storing, viewing, and analyzing data that is known about the facility. This representation provides value to both inspectors and IAEA headquarters, and facilitates communication between the two. The concept further includes a lightweight, portable field tool to aid the inspector in executing a variety of inspection tasks, including capture of images and 3-d scan data. We develop a detailed description of this concept, including its system components, functionality, and example use cases. The envisioned tool would provide value by reducing inspector cognitive load, streamlining inspection tasks, and facilitating communication between the inspector and teams at IAEA headquarters. We conclude by enumerating the top implementation priorities to pursue in the remaining limited time of the project. Approved for public release; further dissemination unlimited.

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Eyes On the Ground: Year 2 Assessment

Brost, Randolph; Little, Charles Q.; Mcdaniel, Michael; Mclendon, William; Wade, James R.

The goal of the Eyes On the Ground project is to develop tools to aid IAEA inspectors. Our original vision was to produce a tool that would take three-dimensional measurements of an unknown piece of equipment, construct a semantic representation of the measured object, and then use the resulting data to infer possible explanations of equipment function. We report our tests of a 3-d laser scanner to obtain 3-d point cloud data, and subsequent tests of software to convert the resulting point clouds into primitive geometric objects such as planes and cylinders. These tests successfully identified pipes of moderate diameter and planar surfaces, but also incurred significant noise. We also investigated the IAEA inspector task context, and learned that task constraints may present significant obstacles to using 3-d laser scanners. We further learned that equipment scale and enclosing cases may confound our original goal of equipment diagnosis. Meanwhile, we also surveyed the rapidly evolving field of 3-d measurement technology, and identified alternative sensor modalities that may prove more suitable for inspector use in a safeguards context. We conclude with a detailed discussion of lessons learned and the resulting implications for project goals. Approved for public release; further dissemination unlimited.

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Geospatial-Temporal Semantic Graphs for Automated Wide-Area Search

Brost, Randolph; Carroll, Michelle J.; Dennison, Debbie; Goforth, John; Mclendon, William; Morrow, James D.; Neil-Dunne, Ojas D.'.; Parekh, Ojas D.; Patterson, Andrew J.; Bays, Nathan R.; Strip, David R.; Woodbridge, Diane M.K.

We address the problem of wide-area search of overhead imagery. Given a time sequence of overhead images, we construct a geospatial-temporal semantic graph, which expresses the complex continuous information in the overhead images in a discrete searchable form, including explicit modeling of changes seen from one image to the next. We can then express desired search goals as a template graph, and search for matches using simple and efficient graph search algorithms. This produces a set of potential matches which provide cues for where to examine the imagery in detail, applying human expertise to determine which matches are correct. We include a match quality metric that scores the matches according to how well they match the stated search goal. This enables matches to be presented in sorted order with the best matches first, similar to the results returned by a web search engine. We present an evaluation of the method applied to several examples and data sets, and show that it can be used successfully for some problems. We also remark on several limitations of the method and note additional work needed to improve its scope and robustness. Approved for public release; further dissemination unlimited.

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Geospatial-Temporal Semantic Graph Evaluation for Induced Seismicity Analysis

Woodbridge, Diane M.; Brost, Randolph

We assess how geospatial-temporal semantic graphs and our GeoGraphy code implementation might contribute to induced seismicity analysis. We focus on evaluating strengths and weaknesses of both 1) the fundamental concept of semantic graphs and 2) our current code implementation. With extensions and research effort, code implementation limitations can be overcome. The paper also describes relevance including possible data input types, expected analytical outcomes and how it can pair with other approaches and fit into a workflow.

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Results 26–50 of 73
Results 26–50 of 73
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