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Enhancing paraoxon binding to organophosphorus hydrolase active site

International Journal of Molecular Sciences

Rempe, Susan R.; Ye, Dongmei Y.; El Khoury, Lea; Mobley, David L.

Organophosphorus hydrolase (OPH) is a metalloenzyme that can hydrolyze organophosphorus agents resulting in products that are generally of reduced toxicity. The best OPH substrate found to date is diethyl p-nitrophenyl phosphate (paraoxon). Most structural and kinetic studies assume that the binding orientation of paraoxon is identical to that of diethyl 4-methylbenzylphosphonate, which is the only substrate analog co-crystallized with OPH. In the current work, we used a combined docking and molecular dynamics (MD) approach to predict the likely binding mode of paraoxon. Then, we used the predicted binding mode to run MD simulations on the wild type (WT) OPH complexed with paraoxon, and OPH mutants complexed with paraoxon. Additionally, we identified three hot-spot residues (D253, H254, and I255) involved in the stability of the OPH active site. We then experimentally assayed single and double mutants involving these residues for paraoxon binding affinity. The binding free energy calculations and the experimental kinetics of the reactions between each OPH mutant and paraoxon show that mutated forms D253E, D253E-H254R, and D253E-I255G exhibit enhanced substrate binding affinity over WT OPH. Interestingly, our experimental results show that the substrate binding affinity of the double mutant D253E-H254R increased by 19-fold compared to WT OPH.

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Hydrogen Refueling Reference Station Lot Size Analysis for Urban Sites

Ehrhart, Brian D.; Bran Anleu, Gabriela A.; Sena, Ethan; Muna, Alice B.; Ye, Dongmei Y.; Hecht, Ethan S.; Rivkin, Carl

Hydrogen Fueling Infrastructure Research and Station Technology (H2FIRST) is a project initiated by the DOE in 2015 and executed by Sandia National Laboratories and the National Renewable Energy Laboratory to address R&D barriers to the deployment of hydrogen fueling infrastructure. One key barrier to the deployment of fueling stations is the land area they require (i.e. "footprint"). Space is particularly a constraint in dense urban areas where hydrogen demand is high but space for fueling stations is limited. This work presents current fire code requirements that inform station footprint, then identifies and quantifies opportunities to reduce footprint without altering the safety profile of fueling stations. Opportunities analyzed include potential new methods of hydrogen delivery, as well as alternative placements of station technologies (i.e. rooftop/underground fuel storage). As interest in heavy-duty fueling stations and other markets for hydrogen grows, this study can inform techniques to reduce the footprint of heavy-duty stations as well. This work characterizes generic designs for stations with a capacity of 600 kg/day hydrogen dispensed and 4 dispenser hoses. Three base case designs (delivered gas, delivered liquid, and on-site electrolysis production) have been modified in 5 different ways to study the impacts of recently released fire code changes, colocation with gasoline refueling, alternate delivery assumptions, underground storage of hydrogen, and rooftop storage of hydrogen, resulting in a total of 32 different station designs. The footprints of the base case stations range from 13,000 to 21,000 ft2 . A significant focus of this study is the NFPA 2 requirements, especially the prescribed setback distances for bulk gaseous or liquid hydrogen storage. While the prescribed distances are large in some cases, these setback distances are found to have a nuanced impact on station lot size; considerations of the delivery truck path, traffic flow, parking, and convenience store location are also important. Station designs that utilize underground and rooftop storage can reduce footprint but may not be practical or economical. For example, burying hydrogen storage tanks underground can reduce footprint, but the cost savings they enable depend on the cost of burial and the cost land. Siting and economic analysis of station lot sizes illustrate the benefit of smaller station footprints in the flexibility and cost savings they can provide. This study can be used as a reference that provides examples of the key design differences that fueling stations can incorporate, the approximate sizes of generic station lots, and considerations that might be unique to particular designs.

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Hydrogen Stations for Urban Sites

Ehrhart, Brian D.; Bran Anleu, Gabriela A.; Ye, Dongmei Y.; Hecht, Ethan S.; Muna, Alice B.; LaFleur, Chris B.

Additional fueling stations need to be constructed in the U.S. to enable the wide-spread adoption of fuel cell electric vehicles. A wide variety of private and public stakeholders are involved in the development of this hydrogen fueling infrastructure. Each stakeholder has particular needs in the station planning, development, and operation process that may include evaluation of potential sites and requirements, understanding the components in a typical system, and/or improving public acceptance of this technology. Publicly available templates of representative station designs can be used to meet many of these stakeholder needs. These 'Reference Stations' help reduce the cost and speed the deployment of hydrogen stations by providing a common baseline with which to start a design, enabling quick assessment of the suitability of a particular site for a hydrogen station, and identifying contributors to poor economics and research and development areas for certain station designs.

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Characteristics of Cryogenic Hydrogen Releases Under Unignited and Ignited Conditions

Hecht, Ethan S.; Panda, Pratikash; Chowdhury, Bikram R.; Ye, Dongmei Y.

Hydrogen is increasingly being used in the public sector as a fuel for vehicles. Due to the high density of hydrogen in its liquid phase, fueling stations that receive deliveries of and store hydrogen as a liquid are more practical for high volume stations. There is a critical need for validated models to assess the risk at hydrogen fueling stations with cryogenic hydrogen on-site. In this work, a cryogenic hydrogen release experiment generated controlled releases of cryogenic hydrogen in the laboratory. We measured the maximum ignition distance, flame length and the radiative heat flux and developed correlations to calculate the ignition ditance and the radiative heat flux. We also measured the concentration and temperature fields of releases under unignited conditions and used these measurements to validate a model for these cryogenic conditions. This study provides critical information on the development of models to inform the safety codes and standards of hydrogen infrastructure.

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Identification of Porphyrin-Silica Composite Nanoparticles using Atmospheric Solids Analysis Probe Mass Spectrometry

MRS Advances

Karler, Casey; Parchert, Kylea J.; Ricken, James B.; Carson, Bryan C.; Mowry, Curtis D.; Fan, Hongyou F.; Ye, Dongmei Y.

Porphyrins are vital pigments involved in biological energy transduction processes. Their abilities to absorb light, then convert it to energy, have raised the interest of using porphyrin nanoparticles as photosensitizers in photodynamic therapy. A recent study showed that self- assembled porphyrin-silica composite nanoparticles can selectively destroy tumor cells, but detection of the cellular uptake of porphyrin-silica composite nanoparticles was limited to imaging microscopy. Here we developed a novel method to rapidly identify porphyrin-silica composite nanoparticles using Atmospheric Solids Analysis Probe-Mass Spectrometry (ASAP-MS). ASAP-MS can directly analyze complex mixtures without the need for sample preparation. Porphyrin-silica composite nanoparticles were vaporized using heated nitrogen desolvation gas, and their thermo-profiles were examined to identify distinct mass- to-charge (M/Z) signatures. HeLa cells were incubated in growth media containing the nanoparticles, and after sufficient washing to remove residual nanoparticles, the cell suspension was loaded onto the end of ASAP glass capillary probe. Upon heating, HeLa cells were degraded and porphyrin-silica composite nanoparticles were released. Vaporized nanoparticles were ionized and detected by MS. The cellular uptake of porphyrin-silica composite nanoparticles was identified using this ASAP-MS method.

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Formation of self-assembled gold nanoparticle supercrystals with facet-dependent surface plasmonic coupling

Nature Communications

Fan, Hongyou F.; Bonal, David A.; Bian, Kaifu; Schunk, Hattie; Ye, Dongmei Y.; Hwang, Austin; Luk, Ting S.; Li, Ruipeng; Wang, Zhongwu

Metallic nanoparticles, such as gold and silver nanoparticles, can self-assemble into highly ordered arrays known as supercrystals for potential applications in areas such as optics, electronics, and sensor platforms. Here we report the formation of self-assembled 3D faceted gold nanoparticle supercrystals with controlled nanoparticle packing and unique facet-dependent optical property by using a binary solvent diffusion method. The nanoparticle packing structures from specific facets of the supercrystals are characterized by small/wide-angle X-ray scattering for detailed reconstruction of nanoparticle translation and shape orientation from mesometric to atomic levels within the supercrystals. We discover that the binary diffusion results in hexagonal close packed supercrystals whose size and quality are determined by initial nanoparticle concentration and diffusion speed. The supercrystal solids display unique facet-dependent surface plasmonic and surface-enhanced Raman characteristics. The ease of the growth of large supercrystal solids facilitates essential correlation between structure and property of nanoparticle solids for practical integrations.

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Solution Based Synthesis of Cs4PbBr6 Perovskite Particles with High Luminescence and Stability

MRS Advances

Fan, Hongyou F.; Billstrand, Brian; Bian, Kaifu; Karler, Casey K.; Ye, Dongmei Y.; Hwang, Austin

Low dimensional lead halide perovskite particles are of tremendous interest due to their size-tunable band gaps, low exciton binding energy, high absorption coefficients, outstanding quantum and photovoltaic efficiencies. Herein we report a new solution-based synthesis of stabilized Cs4PbBr6 perovskite particles with high luminescence. This method requires only mild conditions and produces colloidal particles that are ideal for highly efficient solution-based device fabrications. The synthesized microstructures not only display outstanding luminescence quantum yield but also long term stability in atmospheric conditions. Partial halide substitutions were also demonstrated to extend photoluminescence spectra of the perovskite particles. This convenient synthesis and optical tunability of Cs4PbBr6 perovskite particles will be advantageous for future applications of optoelectronic advices.

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Surfactant-Assisted Synthesis of Tetragonal Porphyrin Microparticles

MRS Advances

Fan, Hongyou F.; Bian, Kaifu; Alarid, Leanne; Karler, Casey K.; Hwang, Austin; Ye, Dongmei Y.

In an effort to utilize their unique photoactive properties, porphyrin monomers were assembled into tetragonal microparticles by a surfactant-assisted neutralization method through the cooperative interactions between the porphyrin building blocks including π-π stacking, J-aggregation and metal-ligand coordination. Electron microscopy characterization in combination with X-ray diffraction confirmed the three-dimensional ordered tetragonal microstructures with stable crystalline frameworks and well defined external surface morphology. Optical absorption and fluorescence spectroscopy revealed enhanced absorbance properties as compared with the raw porphyrin material, favourable for chromophore excitation and energy transport. With active and responsive optical properties, these new porphyrin microparticles look to serve as promising components for a wide range of applications including sensing, diagnostics, solar cells, and optoelectronic devices.

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Reentrant equilibrium disordering in nanoparticle-polymer mixtures

npj Computational Materials

Ye, Dongmei Y.; Kumar, Sanat K.; Grest, Gary S.; Mahynski, Nathan A.; Panagiotopoulos, Athanassios Z.

A large body of experimental work has established that athermal colloid/polymer mixtures undergo a sequence of transitions from a disordered fluid state to a colloidal crystal to a second disordered phase with increasing polymer concentration. These transitions are driven by polymer-mediated interparticle attraction, which is a function of both the polymer density and size. It has been posited that the disordered state at high polymer density is a consequence of strong interparticle attractions that kinetically inhibit the formation of the colloidal crystal, i.e., the formation of a non-equilibrium gel phase interferes with crystallization. Here we use molecular dynamics simulations and density functional theory on polymers and nanoparticles (NPs) of comparable size and show that the crystal-disordered phase coexistence at high polymer density for sufficiently long chains corresponds to an equilibrium thermodynamic phase transition. While the crystal is, indeed, stabilized at intermediate polymer density by polymer-induced intercolloid attractions, it is destabilized at higher densities because long chains lose significant configurational entropy when they are forced to occupy all of the crystal voids. Our results are in quantitative agreement with existing experimental data and show that, at least in the nanoparticle limit of sufficiently small colloidal particles, the crystal phase only has a modest range of thermodynamic stability.

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Results 1–25 of 31
Results 1–25 of 31