Investigations of Chemometric Instrumental Transfer in High Resolution NMR Metabonomic Data Sets
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Proposed for publication in Nuclear Instruments and Methods in Physics Research B.
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Proposed for publication in Surface Science.
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The production and aging of silicone materials remains an important issue in the weapons stockpile due to their utilization in a wide variety of components and systems within the stockpile. Changes in the physical characteristics of silicone materials due to long term desiccation has been identified as one of the major aging effects observed in silicone pad components. Here we report relaxation nuclear magnetic resonance imaging (R-NMRI) spectroscopy characterization of the silica-filled and unfilled polydimethylsiloxane (PDMS) and polydiphenylsiloxane (PDPS) copolymer (M9787) silicone pads within desiccating environments. These studies were directed at providing additional details about the heterogeneity of the desiccation process. Uniform NMR spin-spin relaxation time (T2) images were observed across the pad thickness indicating that the drying process is approximately uniform, and that the desiccation of the M9787 silicone pad is not a H2O diffusion limited process. In a P2O5 desiccation environment, significant reduction of T2 was observed for the silica-filled and unfilled M9787 silicone pad for desiccation up to 225 days. A very small reduction in T2 was observed for the unfilled copolymer between 225 and 487 days. The increase in relative stiffness with desiccation was found to be higher for the unfilled copolymer. These R-NMRI results are correlated to local changes in the modulus of the material
Proposed for publication in Sensors and Actuators B.
Many data analysis algorithms that are currently employed in SAW sensors lack the ability to easily maintain calibration models in the presence of unmodeled interferents or sensor drift. The classical least squares/partial least squares (CLS/PLS) hybrid algorithm is tested in this study for its ability to update calibration models for unmodeled interferents and sensor drift with information from only a single recalibration standard. Use of the CLS/PLS hybrid algorithm for calibration and calibration maintenance of surface acoustic wave (SAW) devices was investigated for synthetic mixtures of iso-octane-methanol-water and with synthetic mixtures of nerve agent analogs, di-iso-propyl methyl phosphonate (DIMP)-kerosene-water along with a true ternary mixture of dimethyl methyl phosphonate (DMMP)-kerosene-water. Calibration statistics using the hybrid algorithm were found to be as good as those obtained from a standard partial least squares (PLS) analysis. In prediction, the hybrid algorithm models were found to perform equivalently to PLS models in the absence of unmodeled interferents or sensor drift, with an accuracy of 5-10% of the reference values and a high degree of precision. In the case of prediction in the presence of unmodeled interferents and/or sensor drift, PLS models and prediction augmented CLS/PLS (PACLS/PLS) hybrid models were compared using a single standard sample to update each model for prediction. For the cases studied, PACLS/PLS hybrid models were comparable to or outperformed updated PLS models that used subset recalibration or piece-wise direct standardization.
Two lots of manufactured Type 3a zeolite samples were compared by TGA/IR analysis. The first lot, obtained from Davidson Chemical, a commercial vendor, was characterized during the previous study cycle for its water and water-plus-CO{sub 2} uptake in order to determine whether CO{sub 2} uptake prevented water adsorption by the zeolite. It was determined that CO{sub 2} did not hamper water adsorption using the Davidson zeolite. CO{sub 2} was found on the zeolite surface at dewpoints below -40 C, however it was found to be reversibly adsorbed. During the course of the previous studies, chemical analyses revealed that the Davidson 3a zeolite contained calcium in significant quantities, along with the traditional counterions potassium and sodium. Chemical analysis of a Type 3a zeolite sample retrieved from Kansas City (heretofore referred to as the ''Stores 3a'' sample) indicated that the Stores sample was a more traditional Type 3a zeolite, containing no calcium. TGA/IR studies this year focused on obtaining CO{sub 2} and water absorbance data from the Stores 3a zeolite. Within the Stores 3a sample, CO{sub 2} was found to be reversibly absorbed within the sample, but only at and below -60 C with 5% CO{sub 2} loading. The amount of CO{sub 2} observed eluting from the Stores zeolite at this condition was similar to what was observed from the Davidson zeolite sample but with a greater uncertainty in the measured value. The results of the Stores 3a studies are summarized within this report.
A sample of polymeric propellant binder was aged from 0 to 60 days at 95 C and analyzed using FT-IR step scan photoacoustic spectroscopy. This technique has the ability of to obtain spectra of the polymer as a function of depth into the polymer material. Multivariate curve resolution was applied to the spectra data obtained to extract the contributions of the aged and un-aged spectral components from the spectra. It was found that multivariate curve resolution could efficiently separate highly overlapped spectra and yielded insights into the aging process.
Journal of Chemometrics
The effect of non-exponential and multi-exponential decay or relaxation behavior on the performance of the direct exponential curve resolution algorithm (DECRA) is investigated through a series of numerical simulations. Three different combinations of decay or relaxation behavior were investigated through DECRA analysis of simulated pulse gradient spin echo (PGSE) NMR diffusion spectra that contained the combination of two individual components. The diffusion decay behavior of one component was described by a single-exponential decay, while the second component was described by either (1) a multi-exponential decay, (2) a decay behavior described by the empirical Kohlrausch-Williams-Watts (KWW) relation or (3) a multi-exponential decay behavior correlated with variations in the NMR spectral line shape. The magnitudes and types of errors produced during the DECRA analysis of spectral data with deviations from a pure single-exponential decay behavior are presented. It is demonstrated that the deviation from single-exponential decay impacts the resulting calculated line shapes, the calculated relative concentrations and the quantitative estimation of the decay or relaxation time constants of both components present in the NMR spectra. Copyright © 2004 John Wiley & Sons, Ltd.
Spectroscopy (Santa Monica)
Chemometric analysis of nuclear magnetic resonance (NMR) spectroscopy has increased dramatically in recent years. Various chemometric techniques have been applied to a wide range of problems in food, agricultural, medical, process, and industrial system. This article gives a brief review of chemometric analysis of NMR spectral data, including a summary of the types of mixtures and experiments analyzed with chemometric techniques. Common experiment problems encountered during the chemometric analysis of NMR data are also discussed.
The goal of this LDRD Research project was to provide a preliminary examination of the use of infrared spectroscopy as a tool to detect the changes in cell cultures upon activation by an infectious agent. Due to a late arrival of funding, only 5 months were available to transfer and setup equipment at UTTM,develop cell culture lines, test methods of in-situ activation and collect kinetic data from activated cells. Using attenuated total reflectance (ATR) as a sampling method, live cell cultures were examined prior to and after activation. Spectroscopic data were collected from cells immediately after activation in situ and, in many cases for five successive hours. Additional data were collected from cells activated within a test tube (pre-activated), in both transmission mode as well as in ATR mode. Changes in the infrared data were apparent in the transmission data collected from the pre-activated cells as well in some of the pre-activated ATR data. Changes in the in-situ activated spectral data were only occasionally present due to (1) the limited time cells were studied and (2) incomplete activation. Comparison of preliminary data to infrared bands reported in the literature suggests the primary changes seen are due an increase in ribonucleic acid (RNA) production. This work will be continued as part of a 3 year DARPA grant.
Spechochimica Acta
Multivariate techniques were used to address the quantification of {sup 17}O-NMR (nuclear magnetic resonance) spectra for a series of primary alcohol mixtures. Due to highly overlapping resonances, quantitative spectral evaluation using standard integration and deconvolution techniques proved difficult. Multivariate evaluation of the {sup 17}O-NMR spectral data obtained for 26 mixtures of five primary alcohols demonstrated that obtaining information about spectral overlap and interferences allowed the development of more accurate models. Initial partial least squares (PLS) models developed for the {sup 17}O-NMR data collected from the primary alcohol mixtures resulted in very poor precision, with signal overlap between the different chemical species suspected of being the primary contributor to the error. To directly evaluate the question of spectral overlap in these alcohol mixtures, net analyte signal (NAS) analyses were performed. The NAS results indicate that alcohols with similar chain lengths produced severely overlapping {sup 17}O-NMR resonances. Grouping the alcohols based on chain length allowed more accurate and robust calibration models to be developed.
This report includes the details of the model building procedure and prediction of seismic field data. Principal Components Regression, a multivariate analysis technique, was used to model seismic data collected as two pieces of equipment were cycled on and off. Models built that included only the two pieces of equipment of interest had trouble predicting data containing signals not included in the model. Evidence for poor predictions came from the prediction curves as well as spectral F-ratio plots. Once the extraneous signals were included in the model, predictions improved dramatically. While Principal Components Regression performed well for the present data sets, the present data analysis suggests further work will be needed to develop more robust modeling methods as the data become more complex.