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A terminology for in situ visualization and analysis systems

International Journal of High Performance Computing Applications

Childs, Hank; Ahern, Sean D.; Ahrens, James; Bauer, Andrew C.; Bennett, Janine C.; Bethel, E.W.; Bremer, Peer-Timo; Brugger, Eric; Cottam, Joseph; Dorier, Matthieu; Dutta, Soumya; Favre, Jean M.; Fogal, Thomas; Frey, Steffen; Garth, Christoph; Geveci, Berk; Godoy, William F.; Hansen, Charles D.; Harrison, Cyrus; Insley, Joseph; Johnson, Chris R.; Klasky, Scott; Knoll, Aaron; Kress, James; Bays, Nathan R.; Lofstead, Gerald (Jay) F.; Ma, Kwan-Liu; Malakar, Preeti; Meredith, Jeremy; Moreland, Kenneth D.; Navratil, Paul; Leary, Manish'; Parashar, Manish; Pascucci, Valerio; Patchett, John; Peterka, Tom; Petruzza, Steve; Pugmire, David; Rasquin, Michel; Rizzi, Silvio; Rogers, David M.; Sane, Sudhanshu; Sauer, Franz; Sisneros, Johnny R.; Shen, Han-Wei; Usher, Will; Vickery, Rhonda; Vishwanath, Venkatram; Wald, Ingo; Wang, Ruonan; Weber, Gunther H.; Whitlock, Brad; Wolf, Matthew; Yu, Hongfeng; Ziegeler, Sean B.

The term “in situ processing” has evolved over the last decade to mean both a specific strategy for visualizing and analyzing data and an umbrella term for a processing paradigm. The resulting confusion makes it difficult for visualization and analysis scientists to communicate with each other and with their stakeholders. To address this problem, a group of over 50 experts convened with the goal of standardizing terminology. This paper summarizes their findings and proposes a new terminology for describing in situ systems. An important finding from this group was that in situ systems are best described via multiple, distinct axes: integration type, proximity, access, division of execution, operation controls, and output type. Here, they discuss these axes, evaluate existing systems within the axes, and explore how currently used terms relate to the axes.

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ASCR Workshop on In Situ Data Management

Peterka, Tom; Bard, Deborah; Bennett, Janine C.; Bethel, E.W.; Oldfield, Ron; Pouchard, Line; Sweeney, Christine; Wolf, Matthew

In January 2019, the U.S. Department of Energy, Office of Science program in Advanced Scientific Computing Research, convened a workshop to identify priority research directions for in situ data management (ISDM). The workshop defined ISDM as the practices, capabilities, and procedures to control the organization of data and enable the coordination and communication among heterogeneous tasks, executing simultaneously in a high-performance computing system, cooperating toward a common objective. The workshop revealed two primary, interdependent motivations for processing and managing data in situ. The first motivation is that the in situ methodology enables scientific discovery from a broad range of data sources over a wide scale of computing platforms: leadership-class systems, clusters, clouds, workstations, and embedded devices at the edge. The successful development of ISDM capabilities will benefit real-time decision-making, design optimization, and data-driven scientific discovery. The second motivation is the need to decrease data volumes. ISDM can make critical contributions to managing large data volumes from computations and experiments to minimize data movement, save storage space, and boost resource efficiency, often while simultaneously increasing scientific precision.

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ASC ATDM Level 2 Milestone #6015: Asynchronous Many-Task Software Stack Demonstration

Bennett, Janine C.; Bettencourt, Matthew T.; Clay, Robert L.; Edwards, Harold C.; Glass, Micheal W.; Hollman, David S.; Kolla, Hemanth; Lifflander, Jonathan J.; Littlewood, David J.; Markosyan, Aram; Moore, Stan G.; Olivier, Stephen L.; Phipps, Eric T.; Rizzi, Francesco; Slattengren, Nicole; Sunderland, Daniel; Wilke, Jeremiah

This report is an outcome of the ASC ATDM Level 2 Milestone 6015: Asynchronous Many-Task Software Stack Demonstration. It comprises a summary and in depth analysis of DARMA and a DARMA-compliant Asynchronous Many-Task (AMT) runtime software stack. Herein performance and productivity of the over- all approach are assessed on benchmarks and proxy applications representative of the Sandia ATDM applications. As part of the effort to assess the perceived strengths and weaknesses of AMT models compared to more traditional methods, experiments were performed on ATS-1 (Advanced Technology Systems) test bed machines and Trinity. In addition to productivity and performance assessments, this report includes findings on the generality of DARMAs backend API as well as findings on interoperability with node- level and network-level system libraries. Together, this information provides a clear understanding of the strengths and limitations of the DARMA approach in the context of Sandias ATDM codes, to guide our future research and development in this area.

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ASC ATDM Level 2 Milestone #5325: Asynchronous Many-Task Runtime System Analysis and Assessment for Next Generation Platforms

Baker, Gavin M.; Bettencourt, Matthew T.; Bova, Steven W.; Franko, Ken; Gamell, Marc; Grant, Ryan; Hammond, Simon; Hollman, David S.; Knight, Samuel; Kolla, Hemanth; Lin, Paul T.; Olivier, Stephen L.; Sjaardema, Gregory D.; Slattengren, Nicole L.; Teranishi, Keita; Wilke, Jeremiah; Bennett, Janine C.; Clay, Robert L.; Kale, Laxkimant; Jain, Nikhil; Mikida, Eric; Aiken, Alex; Bauer, Michael; Lee, Wonchan; Slaughter, Elliott; Treichler, Sean; Berzins, Martin; Harman, Todd; Humphreys, Alan; Schmidt, John; Sunderland, Dan; Mccormick, Pat; Gutierrez, Samuel; Shulz, Martin; Gamblin, Todd; Bremer, Peer T.

This report provides in-depth information and analysis to help create a technical road map for developing next-generation programming models and runtime systems that support Advanced Simulation and Computing (ASC) work- load requirements. The focus herein is on asynchronous many-task (AMT) model and runtime systems, which are of great interest in the context of "Oriascale7 computing, as they hold the promise to address key issues associated with future extreme-scale computer architectures. This report includes a thorough qualitative and quantitative examination of three best-of-class AIM] runtime systems – Charm-++, Legion, and Uintah, all of which are in use as part of the Centers. The studies focus on each of the runtimes' programmability, performance, and mutability. Through the experiments and analysis presented, several overarching Predictive Science Academic Alliance Program II (PSAAP-II) Asc findings emerge. From a performance perspective, AIV runtimes show tremendous potential for addressing extreme- scale challenges. Empirical studies show an AM runtime can mitigate performance heterogeneity inherent to the machine itself and that Message Passing Interface (MP1) and AM11runtimes perform comparably under balanced conditions. From a programmability and mutability perspective however, none of the runtimes in this study are currently ready for use in developing production-ready Sandia ASC applications. The report concludes by recommending a co- design path forward, wherein application, programming model, and runtime system developers work together to define requirements and solutions. Such a requirements-driven co-design approach benefits the community as a whole, with widespread community engagement mitigating risk for both application developers developers. and high-performance computing runtime systein

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ASC ATDM Level 2 Milestone #5325: Asynchronous Many-Task Runtime System Analysis and Assessment for Next Generation Platforms

Baker, Gavin M.; Bettencourt, Matthew T.; Bova, Steven W.; Franko, Ken; Gamell, Marc; Grant, Ryan; Hammond, Simon; Hollman, David S.; Knight, Samuel; Kolla, Hemanth; Lin, Paul T.; Olivier, Stephen L.; Sjaardema, Gregory D.; Slattengren, Nicole L.; Teranishi, Keita; Wilke, Jeremiah; Bennett, Janine C.; Clay, Robert L.; Kale, Laxkimant; Jain, Nikhil; Mikida, Eric; Aiken, Alex; Bauer, Michael; Lee, Wonchan; Slaughter, Elliott; Treichler, Sean; Berzins, Martin; Harman, Todd; Humphreys, Alan; Schmidt, John; Sunderland, Dan; Mccormick, Pat; Gutierrez, Samuel; Shulz, Martin; Gamblin, Todd; Bremer, Peer-Timo

Abstract not provided.

Summary of the CSRI Workshop on Combinatorial Algebraic Topology (CAT): Software, Applications, & Algorithms

Mitchell, Scott A.; Bennett, Janine C.; Day, David M.

This report summarizes the Combinatorial Algebraic Topology: software, applications & algorithms workshop (CAT Workshop). The workshop was sponsored by the Computer Science Research Institute of Sandia National Laboratories. It was organized by CSRI staff members Scott Mitchell and Shawn Martin. It was held in Santa Fe, New Mexico, August 29-30. The CAT Workshop website has links to some of the talk slides and other information, http://www.cs.sandia.gov/CSRI/Workshops/2009/CAT/index.html. The purpose of the report is to summarize the discussions and recap the sessions. There is a special emphasis on technical areas that are ripe for further exploration, and the plans for follow-up amongst the workshop participants. The intended audiences are the workshop participants, other researchers in the area, and the workshop sponsors.

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Scalable analysis tools for sensitivity analysis and UQ (3160) results

Ice, Lisa; Fabian, Nathan; Moreland, Kenneth D.; Bennett, Janine C.; Thompson, David; Karelitz, David B.

The 9/30/2009 ASC Level 2 Scalable Analysis Tools for Sensitivity Analysis and UQ (Milestone 3160) contains feature recognition capability required by the user community for certain verification and validation tasks focused around sensitivity analysis and uncertainty quantification (UQ). These feature recognition capabilities include crater detection, characterization, and analysis from CTH simulation data; the ability to call fragment and crater identification code from within a CTH simulation; and the ability to output fragments in a geometric format that includes data values over the fragments. The feature recognition capabilities were tested extensively on sample and actual simulations. In addition, a number of stretch criteria were met including the ability to visualize CTH tracer particles and the ability to visualize output from within an S3D simulation.

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