Jonathan W. Berry

Discrete Math & Optimization

Author profile picture

Discrete Math & Optimization

jberry@sandia.gov

CV (updated 2018)

(505) 284-4021

Sandia National Laboratories, New Mexico
P.O. Box 5800
Albuquerque, NM 87185-1327

Biography

Jonathan Berry is a Distinguished Member of the Technical Staff at Sandia National Laboratories. He holds a Ph.D. in computer science from Rensselaer Polytechnic Institute and spent almost a decade in liberal arts academia before joining Sandia in 2004. He has led a variety of graph-related projects at Sandia, has served on technical program committees of international conferences/workshops more than ten times, including Supercomputing, ACM/SPAA, IEEE/IPDPS, IEEE/HPEC, ESA-B, SIAM Data Mining and SIAM ACDA. Among his roughly 50 refereed publications are several distinguished papers, including the Best Paper in the Algorithms track of IPDPS 2015. His software and benchmarking interests include the MultiThreaded Graph Library (MTGL), the Mantevo/miniTri mini-app, and variations on the Firehose benchmark, and his current research includes both static and streaming algorithms for the computational kernels underlying graph algorithms and machine learning.

Education

  • Ph.D. in Computer Science, Rensselaer Polytechnic Institute, 1995
  • M.S. in Computer Science, Rensselaer Polytechnic Institute, 1989
  • B.S. in Computer Science and Economics, The American University, 1987

Publications

Daniel Richard DeLayo, Kenny Zhang, Kunal Agrawal, Michael Bender, Jonathan W. Berry, Rathish Das, Benjamin Moseley, Cynthia Ann Phillips, (2022). Automatic HBM Management: Models and Algorithms The 34th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA ?22) Document ID: 1573933

Jonathan W. Berry, Anand Ganti, Kenneth Goss, Carolyn Doo Mayer, Uzoma Onunkwo, Cynthia Ann Phillips, Jared Saia, Timothy Malcolm Shead, (2022). Adapting Secure MultiParty Computation to Support Machine Learning in Radio Frequency Sensor Networks https://www.osti.gov/search/identifier:1842271 Document ID: 1381418

Shikha Singh, Prashant Pandey, Michael Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M Kroeger, Cynthia Ann Phillips, (2022). Using External Memory to Improve Cyber-Security Stream Monitoring SIAM Symposium on Algorithmic Principles of Computer Systems Document ID: 1416297

Michael Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M Kroeger, Prashant Pandey, Cynthia Ann Phillips, Shikha Singh, (2021). Advanced Data Structures for Monitoring Cyber Streams University of New Mexico Computer Science seminar Document ID: 1403817

Shikha Singh, Prashant Pandey, Michael Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M Kroeger, Cynthia Ann Phillips, (2021). Timely Reporting of Heavy Hitters using External Memory ACM Transactions on Database Systems https://www.osti.gov/search/identifier:1830533 Document ID: 1381271

Clayton Hughes, Rizwan Ashraf, Roberto Gioiosa, Cynthia Ann Phillips, Jonathan W. Berry, William Eugene Hart, Carl Laird, Sivasankaran Rajamanickam, (2021). ARIAA Update — SST PM/PI Meeting AI/Codesign Document ID: 1392610

Stephen Lecler Olivier, Nathan David Ellingwood, Jonathan W. Berry, Daniel Dunlavy, (2021). Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications 2021 IEEE High Performance Extreme Computing Virtual Conference Document ID: 1356073

Stephen Lecler Olivier, Nathan David Ellingwood, Jonathan W. Berry, Daniel Dunlavy, (2021). Performance Portability of an SpMV Kernel Across Scientific Computing and Data Science Applications 2021 IEEE High Performance Extreme Computing Virtual Conference Document ID: 1344909

Jonathan W. Berry, Cynthia Ann Phillips, Alex Porter, (2021). Maintaining Connected Components in Infinite Graph Streams Sandia CSRI Summer Program (for students) seminar Document ID: 1343679

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Umit Catalyurek, (2021). A Block-Based Triangle Counting Algorithm on Heterogeneous Environments IEEE Transactions on Parallel and Distributed Systems https://www.osti.gov/search/identifier:1810367 Document ID: 1330639

Abdurrahman – x Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Umit – x Catalyurek, (2020). A Block-Based Triangle Counting Algorithm on Heterogeneous Environments https://www.osti.gov/search/identifier:1669197 Document ID: 1208099

Prashant Pandey, Shikha Singh, Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Rob Johnson, Thomas M Kroeger, Cynthia Ann Phillips, (2020). Timely Reporting of Heavy Hitters using External Memory Acm Sigmod https://www.osti.gov/search/identifier:1772872 Document ID: 1104645

Seher Acer, Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Michael Wolf, Umit Catalyurek, (2020). Scalable Triangle Counting on Distributed-Memory Systems SIAM Conference on Parallel Processing for Scientific Computing (PP20) https://www.osti.gov/search/identifier:1765523 Document ID: 1091785

George M. Slota, Jonathan W. Berry, Simon David Hammond, Stephen Lecler Olivier, Cynthia Ann Phillips, Sivasankaran Rajamanickam, (2019). Scalable Generation of Graphs for Benchmarking HPC Community-Detection Algorithms Supercompouting https://www.osti.gov/search/identifier:1643608 Document ID: 1066701

Jonathan W. Berry, Neil Butcher, Umit Catalyurek, Peter Kogge, Paul Lin, Stephen Lecler Olivier, Cynthia Ann Phillips, Sivasankaran Rajamanickam, George M. Slota, Gwendolyn Renae Voskuilen, Abdurrahman Yasar, Jeffrey G Young, (2019). Multi-Level Memory Algorithmics for Large, Sparse Problems https://www.osti.gov/search/identifier:1574408 Document ID: 1055577

Timothy Malcolm Shead, Jonathan W. Berry, Cynthia Ann Phillips, Jared Saia, (2019). Information-Theoretically Secure Distributed Machine Learning https://www.osti.gov/search/identifier:1763277 Document ID: 1055204

George M. Slota, Jonathan W. Berry, Simon David Hammond, Stephen Lecler Olivier, Cynthia Ann Phillips, Sivasankaran Rajamanickam, (2019). Scalable Generation of Graphs for Benchmarking HPC Community-Detection Algorithms International Conference for High Performance Computing, Networking, Storage and Analysis (SC’19) https://www.osti.gov/search/identifier:1643234 Document ID: 1009684

Jonathan W. Berry, (2019). Making Social Networks More Human: a Topological Approach Statistical Analysis and Data Mining https://www.osti.gov/search/identifier:1559509 Document ID: 984663

Abdurrahman Yasar, Sivasankaran Rajamanickam, Jonathan W. Berry, Seher Acer, Michael Wolf, Jeffrey G Young, Umit Catalyurek, (2019). Linear Algebra-Based Triangle Counting via Fine-Grained Tasking on Heterogeneous Environments IEEE HPEC Graph Challenge https://www.osti.gov/search/identifier:1641203 Document ID: 986156

Jonathan W. Berry, (2019). Single-Node MultiThreaded Graph Computations with Kokkos Kokkos User’s Group https://www.osti.gov/search/identifier:1648761 Document ID: 959997

Thomas M Kroeger, Evan Thomas West, Justin Lawrence Raizes, Cynthia Ann Phillips, Jonathan W. Berry, (2019). Tracking Network Events with Write Optimized Data Structures Super Computing Network Research Experimentation https://www.osti.gov/search/identifier:1639502 Document ID: 888485

Jonathan W. Berry, Cynthia Ann Phillips, Steven J. Plimpton, Alexandra Porter, Timothy Malcolm Shead, (2019). Maintaining Connected Components for Infinite Graph Streams Theoretical Foundations of Storage Systems https://www.osti.gov/search/identifier:1639494 Document ID: 936622

Thomas M Kroeger, Justin Lawrence Raizes, Evan Thomas West, Brian J Wright, Cynthia Ann Phillips, Jonathan W. Berry, Michael Shane Bender, Rob Johnson, (2019). Tracking Network Events with Write Optimized Data Structures NDIS Super Computing 2019 https://www.osti.gov/search/identifier:1639501 Document ID: 914170

Jonathan W. Berry, (2019). High-Performance Computing Storage System Challenges for Theoreticians Theoretical Foundations of Storage Systems https://www.osti.gov/search/identifier:1644492 Document ID: 936526

Jonathan W. Berry, Kina Kincher-Winoto, Cynthia Ann Phillips, Eriq Augustine, Lise Getoor, (2018). Entity Resolution at Large Scale: Benchmarking and Algorithmics https://www.osti.gov/search/identifier:1493841 Document ID: 900732

Sivasankaran Rajamanickam, Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan W. Berry, Umit Catlyurek, (2018). Fast Triangle Counting Using Cilk IEEE High Performance Extreme Computing Conference https://www.osti.gov/search/identifier:1594701 Document ID: 876126

George Slota, Jonathan W. Berry, Cynthia Ann Phillips, Sivasankaran Rajamanickam, (2018). Scalable Generation of Graphs for Benchmarking HPC Community-Detection Algorithms Ipdps https://www.osti.gov/search/identifier:1594696 Document ID: 877959

Sivasankaran Rajamanickam, Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan W. Berry, Umit Catlyurek, (2018). Fast Triangle Counting Using Cilk IEEE High Performance Extreme Computing Conference https://www.osti.gov/search/identifier:1594706 Document ID: 865523

Abdurrahman (Georgia Tech) Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan W. Berry, Umit (Georgia Tech) Catalyurek, (2018). Fast Linear Algebra-Based Triangle Analytics with Kokkos Kernels Chesapeake Large-Scale Analytics Conference https://www.osti.gov/search/identifier:1592563 Document ID: 888628

Jonathan W. Berry, Neil A Butcher, Stephen Lecler Olivier, Simon David Hammond, Peter Kogge, (2018). Optimizing for KNL Usage Modes When Data Doesn?t Fit in MCDRAM International Conference on Parallel Processing https://www.osti.gov/search/identifier:1582186 Document ID: 843106

Jonathan W. Berry, Cynthia Ann Phillips, (2018). Graph Libraries Wish List Seminar on High-Performance Graph Algorithms https://www.osti.gov/search/identifier:1581939 Document ID: 808749

George Slota, Jonathan W. Berry, Cynthia Ann Phillips, Sivasankaran Rajamanickam, (2018). Generating massive random graphs that mimic real data Seminar on High-Performance Graph Algorithms https://www.osti.gov/search/identifier:1581938 Document ID: 808750

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan W. Berry, Umit Catalyurek, (2018). Fast Linear Algebra-Based Triangle Analytics with KokkosKernels Siam Cse19 Document ID: 842716

Abdurrahman Yasar, Sivasankaran Rajamanickam, Michael Wolf, Jonathan W. Berry, Umit Catalyurek, (2018). Fast Triangle Counting Using Cilk HPEC Graph Challenge https://www.osti.gov/search/identifier:1573958 Document ID: 830983

Jonathan W. Berry, Neil A Butcher, Stephen Lecler Olivier, Simon David Hammond, Peter Kogge, (2018). Optimizing for KNL Usage Models When Data Doesn’t Fit in MCDRAM International Conference on Parallel Processing https://www.osti.gov/search/identifier:1526368 Document ID: 808588

Jonathan W. Berry, George M. Slota, Cynthia Ann Phillips, Sivasankaran Rajamanickam, (2018). Scalable Community Detection Benchmark Generation SIAM Combintorial Scientifc Computing https://www.osti.gov/search/identifier:1525712 Document ID: 808298

Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, Justin Jacobs, Rob Johnson, Thomas M Kroeger, Tyler Mayer, Samuel McCauley, Prashant Pandey, Cynthia Ann Phillips, Alexandra Porter, Shikha Singh, Justin Raizes, Helen Xu, David Zage, (2018). Advanced Data Structures for Improved Cyber Resilience and Awareness in Untrusted Environments: LDRD report https://www.osti.gov/search/identifier:1528756 Document ID: 797083

Jonathan W. Berry, Cynthia Ann Phillips, Sivasankaran Rajamanickam, George M. Slota, (2018). Scalable community detection benchmark generation SIAM Workshop on Combinatorial Scientific Computing 2018 (CSC18) https://www.osti.gov/search/identifier:1524279 Document ID: 796561

Jonathan W. Berry, Cynthia Ann Phillips, Jared Saia, (2018). Making Social-Network Data Sets More Human to Aid National-Security Graph Analytics UNM CS Department faculty talks to visitors https://www.osti.gov/search/identifier:1507481 Document ID: 783899

Mehmet Deveci, Michael Wolf, Jonathan W. Berry, Sivasankaran Rajamanickam, Erik Gunnar Boman, Christian Robert Trott, Simon David Hammond, Stephen Lecler Olivier, (2018). Multi-threaded Sparse Matrix Matrix Multiplication with Applications in Scientific Computing and Graph Analytics SIAM Parallel Processing https://www.osti.gov/search/identifier:1498626 Document ID: 771577

Michael Wolf, Daniel Dunlavy, Richard B. Lehoucq, Jonathan W. Berry, Daniel (Rice) Bourgeois, (2018). TriData: High Performance Linear Algebra-Based Data Analytics Siam Pp18 https://www.osti.gov/search/identifier:1497538 Document ID: 761291

Jonathan W. Berry, (2017). Benchmarking for High-Performance Data Analysis UNM Computer Science Department Colloquium https://www.osti.gov/search/identifier:1485719 Document ID: 727543

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, Randy David Smith, (2017). Cooperative Graph Analytics for Autonomous Data Centers Chesapeake Large-Scale Analytics Conference https://www.osti.gov/search/identifier:1480661 Document ID: 724606

Michael Wolf, Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Sivasankaran Rajamanickam, (2017). KKTri: Fast Linear Algebra-Based Triangle Counting with KokkosKernels Supercomputing 2017 https://www.osti.gov/search/identifier:1480379 Document ID: 724809

Michael Wolf, Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels Ieee Hpec https://www.osti.gov/search/identifier:1470929 Document ID: 671843

Michael Wolf, Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels IEEE High Performance Extreme Computing Conference (Graph Challenge) https://www.osti.gov/search/identifier:1466485 Document ID: 670482

Mehmet Deveci, Christian Robert Trott, Simon David Hammond, Michael Wolf, Jonathan W. Berry, Sivasankaran Rajamanickam, (2017). Performance Portable Sparse Matrix Matrix Multiplication with Applications in Scientific Computing and Graph Analytics CIS External Review Board https://www.osti.gov/search/identifier:1466104 Document ID: 670288

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, Randy David Smith, (2017). Cooperative Computing for Autonomous Data Centers CS seminar https://www.osti.gov/search/identifier:1465495 Document ID: 611702

Jonathan W. Berry, Michael Bender, Simon David Hammond, Karl Scott Hemmert, Samuel McCauley, Branden J. Moore, Benjamin Moseley, Cynthia Ann Phillips, David Richard Resnick, Arun F. Rodrigues, (2017). Two-level main memory co-design: Multi-threaded algorithmic Journal of Parallel and Distributed Computing Document ID: 659667

Michael Wolf, Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Sivasankaran Rajamanickam, (2017). Fast Linear Algebra-Based Triangle Counting with KokkosKernels IEEE High Performance Extreme Computing Conference (Graph Challenge) https://www.osti.gov/search/identifier:1506222 Document ID: 637602

Richard B. Lehoucq, Erik Gunnar Boman, Karen D. Devine, Jonathan W. Berry, Daniel Dunlavy, Michael Wolf, Van (LLNL) Henson, Geoff (LLNL) Sanders, (2017). A computational spectral graph theory tutorial Householder Symposium XX https://www.osti.gov/search/identifier:1456850 Document ID: 626244

Jonathan W. Berry, (2016). Stateful Streaming in Distributed Memory Supercomputers Chesapeake Large-Scale Analytics Conference https://www.osti.gov/search/identifier:1406959 Document ID: 553036

Harold C. Edwards, Stephen Lecler Olivier, Jonathan W. Berry, Greg Edward Mackey, Sivasankaran Rajamanickam, Michael Wolf, Kyungjoo Kim, George Widgery Stelle, (2016). Hierarchical Task-Data Parallelism using Kokkos and Qthreads https://www.osti.gov/search/identifier:1562647 Document ID: 530769

Jonathan W. Berry, (2016). Social Network Analysis Research at Sandia (a non-comprehensive survey) CCR Student Seminar https://www.osti.gov/search/identifier:1374004 Document ID: 476746

Jonathan W. Berry, (2016). Cooperative Computing for Autonomous Data Centers Storing Social Network Data Workshop on Algorithms for Modern Massive Dataset (MMDS) https://www.osti.gov/search/identifier:1373212 Document ID: 474977

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, Randy David Smith, (2016). Cooperative computing for autonomous data centers New York Area Theory Day https://www.osti.gov/search/identifier:1365240 Document ID: 431641

Michael Bender, Jonathan W. Berry, Rob Johnson, Thomas M Kroeger, Samuel McCauley, Cynthia Ann Phillips, Bertrand Simon, Shikha Singh, David John Zage, (2016). Anti-persistence on persistent storage: history-independent sparse tables and dictionaries ACM Principles of Database Systems https://www.osti.gov/search/identifier:1365241 Document ID: 431691

Jonathan W. Berry, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, (2015). Finding Non-Human Nodes in Social Networks Using Only Topology Inference on networksalgorithms, phase transitions, new models, new data Workshop https://www.osti.gov/search/identifier:1338158 Document ID: 365979

Jonathan W. Berry, M Bender, Simon David Hammond, B Moore, Cynthia Phillips, B Moseley, Jonathan W. Berry, (2015). k-Means Clustering for Two-Level Memory Systems Memsys 2015 https://www.osti.gov/search/identifier:1331420 Document ID: 342620

Jonathan W. Berry, Michael Bender, Simon David Hammond, Karl Scott Hemmert, Samuel McCauley, Branden J. Moore, Benjamin Moseley, Cynthia Ann Phillips, David Richard Resnick, Arun F. Rodrigues, (2015). Two-Level Main Memory Co-Design: Multi-Threaded Algorithmic Primitives, Analysis, and Simulation Journal of Parallel and Distributed Computing https://www.osti.gov/search/identifier:1371471 Document ID: 353680

Michael Wolf, Jonathan W. Berry, Dylan (Allstate) Stark, (2015). A Task-Based Linear Algebra Building Blocks Approach for Scalable Graph Analytics 2015 IEEE High Performance Extreme Computing Conference https://www.osti.gov/search/identifier:1531124 Document ID: 321327

Michael A. Bender, Jonathan W. Berry, Simon David Hammond, Branden J. Moore, Benjamin Moseley, Cynthia Ann Phillips, (2015). k-Means Clustering on Two-Level Memory Systems International Symposium on Memory Systems https://www.osti.gov/search/identifier:1321804 Document ID: 320263

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, (2015). Cyber Graph Queries for Geographically Distributed Data Centers https://www.osti.gov/search/identifier:1183059 Document ID: 285931

Michael Wolf, Jonathan W. Berry, Dylan Stark, (2015). A Task-Based Linear Algebra Building Blocks Approach for Scalable Graph Analytics 2015 IEEE High Performance Extreme Computing Conference https://www.osti.gov/search/identifier:1531050 Document ID: 275755

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, Randy David Smith, (2015). Cooperative computing for autonomous data centers Association for Women in Mathematics Research Symposium 2015 https://www.osti.gov/search/identifier:1252918 Document ID: 244046

Michael Bender, Jonathan W. Berry, Simon David Hammond, Karl Scott Hemmert, Samuel McCauley, Branden J. Moore, Benjamin Moseley, Cynthia Ann Phillips, David Richard Resnick, Arun F. Rodrigues, (2015). Two-level main memory co-design: multi-threaded algorithmic primitives, analysis, and simulation IEEE International Parallel and Distributed Processing Symposium https://www.osti.gov/search/identifier:1531287 Document ID: 221111

Jonathan W. Berry, Michael Collins, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, Randy David Smith, (2015). Cooperative computing for autonomous data centers IEEE International Parallel and Distributed Processing Symposium https://www.osti.gov/search/identifier:1238307 Document ID: 221218

Jonathan W. Berry, Cynthia Ann Phillips, Bruce A. Hendrickson, (2014). Workshop on Streaming Graph Algorithms (WSGA) Overview Workshop on Streaming Graph Algorithms https://www.osti.gov/search/identifier:1514565 Document ID: 207509

Jonathan W. Berry, Aaron Kearns, Cynthia Ann Phillips, Jared Saia, (2014). Finding a planted clique in a distributed social network SIAM Workshop on Network Science https://www.osti.gov/search/identifier:1496707 Document ID: 112380

Tamara G. Kolda, Todd Plantenga, Ali Pinar, Seshadhri Comandur, Jonathan W. Berry, Madhav Jha, Cynthia Ann Phillips, Christine Task, (2014). Sandia Software for Networks from DARPA GRAPHS Program DARPA GRAPHS Special Projects Meeting https://www.osti.gov/search/identifier:1145819 Document ID: 5336213

Katherine A. Klise, William Eugene Hart, John Daniel Siirola, Cynthia Ann Phillips, Sean A. Mckenna, David Hart, Jonathan W. Berry, Jean-Paul Watson, T Haxton, R Murray, R Janke, T Taxon, C Laird, (2012). Water Security Toolkit: Simulation and optimization tools to support emergency response planning and management Sandia Research and Technology Showcase https://www.osti.gov/search/identifier:1295398 Document ID: 5312603

Brian Barrett, Richard C. Murphy, Kyle B. Wheeler, Jonathan W. Berry, (2011). Implementing a Portable Multi-Threaded Graph Library: the MTGL on Qthreads International Parallel & Distributed Processing Symposium https://www.osti.gov/search/identifier:1141359 Document ID: 5268560

Mark A. Gonzales, Megan Lee Vance, Bruce A. Hendrickson, Jonathan W. Berry, (2011). Analyzing the Scalability of Graph Algorithms on Eldorado IEEE International Parallel and Distributed Processing Symposium https://www.osti.gov/search/identifier:1141577 Document ID: 5246784

Cynthia Ann Phillips, Erik Gunnar Boman, Robert D. Carr, William Eugene Hart, Jonathan W. Berry, Jean-Paul Watson, David Hart, Sean A. Mckenna, Lee Ann Riesen, Regan Murray, (2010). Sensor Placement for Municipal Water Networks no conference, just a seminar https://www.osti.gov/search/identifier:1038219 Document ID: 5290096

Dylan Stark, Richard C. Murphy, Brian Barrett, Jonathan W. Berry, (2010). Accelerating Multicore Graph Algorithms by Trading Latency for Bandwidth Ipdps https://www.osti.gov/search/identifier:1028368 Document ID: 5287697

Karen D. Devine, Steven J. Plimpton, Gregory Bayer, Brian Barrett, Jonathan W. Berry, (2010). Comparing Programming Paradigms for Graph Algorithms SIAM Conference on Parallel Processing https://www.osti.gov/search/identifier:1141842 Document ID: 5280063

Bruce A. Hendrickson, Randall A. Laviolette, Cynthia Ann Phillips, Jonathan W. Berry, (2009). Tolerating the Community Detection Resolution Limit with Edge Weighting Proceedings of the National Academy of Sciences https://www.osti.gov/search/identifier:967791 Document ID: 5267696

William Eugene Hart, Jonathan W. Berry, Erik Gunnar Boman, Cynthia Ann Phillips, Lee Ann Riesen, Jean-Paul Watson, Regan Murray, (2008). The TEVA-SPOT Toolkit for Drinking Water Contaminant Warning System Design World Environmental & Water Resources Congress https://www.osti.gov/search/identifier:946963 Document ID: 5264167

Karen D. Devine, Jonathan W. Berry, Steven J. Plimpton, (2008). The PageRank Derby Workshop on Data Mining and Data Analysis https://www.osti.gov/search/identifier:1142880 Document ID: 5264196

William Eugene Hart, Cynthia Ann Phillips, Jonathan W. Berry, Erik Gunnar Boman, Lee Ann Riesen, Jean-Paul Watson, Regan Murray, Terranna Baranowski, George Gray, Jonathan Herrmann, Robert Janke, Thomas N. Taxon, James Uber, Kevin Morley, (2008). U. S. Environmental Protection Agency uses Operations Research to Reduce Drinking Water Contamination Risks INFORMS Interfaces Journal https://www.osti.gov/search/identifier:1142978 Document ID: 5263172

William Eugene Hart, Lee Ann Riesen, Jonathan W. Berry, Robert Thomas Heaphy, Cynthia Ann Phillips, Stefan Chakerian, (2008). Nightly Software Testing in Acro with EXACT and FAST https://www.osti.gov/search/identifier:1712959 Document ID: 5259449

William Eugene Hart, Jonathan W. Berry, Erik Gunnar Boman, Robert D. Carr, Lee Ann Riesen, Cynthia Ann Phillips, Jean-Paul Watson, Regan Murray, Robert Janke, Thomas N. Taxon, James Uber, Kevin Morley, (2008). Sandia/EPA TEVA-SPOT Water Security Team Chosen as Finalist for 2008 Edelman Award Competition https://www.osti.gov/search/identifier:1713101 Document ID: 5258689

William Eugene Hart, Erik Gunnar Boman, Lee Ann Riesen, Jonathan W. Berry, Cynthia Ann Phillips, Jean-Paul Watson, (2007). Limited-Memory Techniques for Sensor Placement in Water Distribution Networks Learning and Intelligent OptimizationN Workshop (LION) https://www.osti.gov/search/identifier:1146836 Document ID: 5256946

William Eugene Hart, Jonathan W. Berry, Erik Gunnar Boman, Cynthia Ann Phillips, Lee Ann Riesen, Jean-Paul Watson, (2007). Limited-Memory Techniques for Sensor Placement in Water Distribution Networks Learning and Intelligent OptimizatioN LION 2007 II https://www.osti.gov/search/identifier:1146712 Document ID: 5256116

William Eugene Hart, Jonathan W. Berry, Cynthia Ann Phillips, Jean-Paul Watson, Ostfeld Avi, James G. Uber, Elad Salomons, (2007). The Battle of the Water Sensor Networks (BWSN): A Design Challenge for Engineers and AlgorithmsChallenge for Engineers and Algorithms Journal of Water Resources, Planning and Management https://www.osti.gov/search/identifier:1147317 Document ID: 5254614

William Eugene Hart, Jonathan W. Berry, Cynthia Ann Phillips, Jean-Paul Watson, Lee Ann Riesen, Regan Murray, (2007). SPOT: A Sensor Placement Optimization Toolkit for Drinking Water Contaminant Warning System Design World Environmental & Water Resources Congress 2007 https://www.osti.gov/search/identifier:1147328 Document ID: 5253902

William Eugene Hart, Jonathan W. Berry, Robert Thomas Heaphy, Cynthia Ann Phillips, (2007). EXACT: The EXperimental Algorithmics Computational Toolkit Workshop on Experimental Computer Science https://www.osti.gov/search/identifier:1147363 Document ID: 5253927

Bruce A. Hendrickson, Jonathan W. Berry, Kamesh Madduri, David Bader, Joseph Crobak, (2007). Multithreaded Algorithms for Processing Massive Graphs Chapter in "Petascale ComputingAlgorithms and Applications" https://www.osti.gov/search/identifier:1147175 Document ID: 5253716

Benjamin Cole, Jonathan W. Berry, Robert D. Carr, Jonathan Eckstein, (2007). Abstracts for INFORMS Parallel Combinatorial Optimization Session INFORMS Annual Meeting https://www.osti.gov/search/identifier:1148244 Document ID: 5252984

William Eugene Hart, Cynthia Ann Phillips, Jonathan W. Berry, Jean-Paul Watson, Lisa Fleischer, (2007). Copy of Sensor placement in municipal water networks Journal of Water Resources Planning and Management https://www.osti.gov/search/identifier:951710 Document ID: 5225723

Bruce A. Hendrickson, Jonathan W. Berry, Andrew Lumsdaine, Doug Gregor, (2007). Challenges in Parallel Graph Processing Parallel Processing Letters https://www.osti.gov/search/identifier:1426995 Document ID: 5249167

Sarah G. Rich, Jonathan W. Berry, William C. McLendon, Bruce A. Hendrickson, Douglas Gregor, Andrew Lumsdaine, (2006). DFS: A Simple to Write Yet Difficult to Execute Benchmark https://www.osti.gov/search/identifier:1724669 Document ID: 5247345

Bruce A. Hendrickson, Jonathan W. Berry, William C. McLendon, Richard C. Murphy, (2006). High Performance Graph Queries DHS ASC PIs Meeting https://www.osti.gov/search/identifier:1264318 Document ID: 5246694

William Eugene Hart, Jonathan W. Berry, Robert D. Carr, Cynthia Ann Phillips, Jean-Paul Watson, Regan Murray, (2006). Sensor Placement to Satisfy Water Security and Operational Objectives WDSA Workshop on Contaminant System Design https://www.osti.gov/search/identifier:1266068 Document ID: 5245499

William Eugene Hart, Jonathan W. Berry, Jean-Paul Watson, Robert D. Carr, Cynthia Ann Phillips, Vitus J. Leung, (2006). On the Placement of Imperfect Sensors in Municipal Water Networks 8th Annual Water Distribution System Analysis Symposium https://www.osti.gov/search/identifier:1264620 Document ID: 5243234

Mark A. Gonzales, Jonathan W. Berry, Bruce A. Hendrickson, Megan Vance, (2006). Scalability of Graph Algorithms on Eldorado Cray Users Group Workshop https://www.osti.gov/search/identifier:1319896 Document ID: 5243032

Robert D. Carr, Jonathan W. Berry, William Eugene Hart, Cynthia Ann Phillips, Jean-Paul Watson, (2006). Robust Sensor Placement for Realistic Surveillance Problems 2006 CIS External Review https://www.osti.gov/search/identifier:1729764 Document ID: 5243121

Benjamin Cole, Jonathan W. Berry, William Eugene Hart, (2005). 2005 World Water and Envirnomental Resources Congress 2005 World Water and Environmental Resources Congress https://www.osti.gov/search/identifier:1729764 Document ID: 5229972

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Awards & Recognition

2015

Michael Wolf, Jonathan W. Berry, Dylan Stark, Best Paper finalist, IEEE High Performance Extreme Computing Conference, September 1, 2015

2017

Michael Wolf, Mehmet Deveci, Jonathan W. Berry, Simon David Hammond, Sivasankaran Rajamanickam, Champion of Graph Challenge, IEEE/DARPA/Amazon, Fastest triangle counting algorithm., September 13, 2017