Publications

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Increasing energy costs, the dependence on foreign oil supplies, and environmental concerns have emphasized the need to produce sustainable renewable fuels and chemicals. The strategy for producing next-generation biofuels must include efficient processes for biomass conversion to liquid fuels and the fuels must be compatible with current and future engines. Unfortunately, biofuel development generally takes place without any consideration of combustion characteristics, and combustion scientists typically measure biofuels properties without any feedback to the production design. We seek to optimize the fuel/engine system by bringing combustion performance, specifically for advanced next-generation engines, into the development of novel biosynthetic fuel pathways. Here we report an innovative coupling of combustion chemistry, from fundamentals to engine measurements, to the optimization of fuel production using metabolic engineering. We have established the necessary connections among the fundamental chemistry, engine science, and synthetic biology for fuel production, building a powerful framework for co-development of engines and biofuels.

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The pulsed photolytic chlorine-initiated oxidation of methyl-tert-butyl ketone (MTbuK), di-tert-butyl ketone (DTbuK), and a series of partially deuterated diethyl ketones (DEK) is studied in the gas phase at 8 Torr and 550-650 K. Products are monitored as a function of reaction time, mass, and photoionization energy using multiplexed photoionization mass spectrometry with tunable synchrotron ionizing radiation. The results establish that the primary 3-oxoalkyl radicals of those ketones, formed by abstraction of a hydrogen atom from the carbon atom in γ-position relative to the carbonyl oxygen, undergo a rapid rearrangement resulting in an effective 1,2-acyl group migration, similar to that in a Dowd-Beckwith ring expansion. Without this rearrangement, peroxy radicals derived from MTbuK and DTbuK cannot undergo HO2 elimination to yield a closed-shell unsaturated hydrocarbon coproduct. However, not only are these coproducts observed, but they represent the dominant oxidation channels of these ketones under the conditions of this study. For MTbuK and DTbuK, the rearrangement yields a more stable tertiary radical, which provides the thermodynamic driving force for this reaction. Even in the absence of such a driving force in the oxidation of partially deuterated DEK, the 1,2-acyl group migration is observed. Quantum chemical (CBS-QB3) calculations show the barrier for gas-phase rearrangement to be on the order of 10 kcal mol-1. The MTbuK oxidation experiments also show several minor channels, including β-scission of the initial radicals and cyclic ether formation. © 2013 American Chemical Society.

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This work measures the absolute photoionization cross-section of the vinyl radical (σvinyl(E)) between 8.1 and 11.0 eV. Two different methods were used to obtain absolute cross-section measurements: 193 nm photodissociation of methyl vinyl ketone (MVK) and 248 nm photodissociation of vinyl iodide (VI). The values of the photoionization cross-section for the vinyl radical using MVK, σvinyl(10.224 eV) = (6.1 ± 1.4) Mb and σvinyl(10.424 eV) = (8.3 ± 1.9) Mb, and using VI, σvinyl(10.013 eV) = (4.7 ± 1.1) Mb, σ vinyl(10.513 eV) = (9.0 ± 2.1) Mb, and σ vinyl(10.813 eV) = (12.1 ± 2.9) Mb, define a photoionization cross-section that is ∼1.7 times smaller than a previous determination of this value. © 2013 AIP Publishing LLC.

The CH(X2Π) + propene reaction is studied in the gas phase at 298 K and 4 Torr (533.3 Pa) using VUV synchrotron photoionization mass spectrometry. The dominant product channel is the formation of C 4H6 (m/z 54) + H. By fitting experimental photoionization spectra to measured spectra of known C4H6 isomers, the following relative branching fractions are obtained: 1,3-butadiene (0.63 ± 0.13), 1,2-butadiene (0.25 ± 0.05), and 1-butyne (0.12 ± 0.03) with no detectable contribution from 2-butyne. The CD + propene reaction is also studied and two product channels are observed that correspond to C 4H6 (m/z 54) + D and C4H5D (m/z 55) + H, formed at a ratio of 0.4 (m/z 54) to 1.0 (m/z 55). The D elimination channel forms almost exclusively 1,2-butadiene (0.97 ± 0.20) whereas the H elimination channel leads to the formation of deuterated 1,3-butadiene (0.89 ± 0.18) and 1-butyne (0.11 ± 0.02); photoionization spectra of undeuterated species are used in the fitting of the measured m/z 55 (C 4H5D) spectrum. The results are generally consistent with a CH cycloaddition mechanism to the C-C bond of propene, forming 1-methylallyl followed by elimination of a H atom via several competing processes. The direct detection of 1,3-butadiene as a reaction product is an important validation of molecular weight growth schemes implicating the CH + propene reaction, for example, those reported recently for the formation of benzene in the interstellar medium (Jones, B. M. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 452-457). © 2013 American Chemical Society.

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Hydrocarbon autoignition has long been an area of intense fundamental chemical interest, and is a key technological process for emerging clean and efficient combustion strategies. Carbon-centered radicals containing an -OOH group, commonly denoted QOOH radicals, are produced by isomerization of the alkylperoxy radicals that are formed in the first stages of oxidation. These QOOH radicals are among the most critical species for modeling autoignition, as their reactions with O2 are responsible for chain branching below 1000 K. Despite their importance, no QOOH radicals have ever been observed by any means, and only computational and indirect experimental evidence has been available on their reactivity. Here, we directly produce a QOOH radical, 2-hydroperoxy-2-methylprop-1-yl, and experimentally determine rate coefficients for its unimolecular decomposition and its association reaction with O 2. The results are supported by high-level theoretical kinetics calculations. Our experimental strategy opens up a new avenue to study the chemistry of QOOH radicals in isolation. © 2013 the Owner Societies.

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Predictive simulation for designing efficient engines requires detailed modeling of combustion chemistry, for which the possibility of unknown pathways is a continual concern. Here, we characterize a low-lying water elimination pathway from key hydroperoxyalkyl (QOOH) radicals derived from alcohols. The corresponding saddle-point structure involves the interaction of radical and zwitterionic electronic states. This interaction presents extreme difficulties for electronic structure characterizations, but we demonstrate that these properties of this saddle point can be well captured by M06-2X and CCSD(T) methods. Experimental evidence for the existence and relevance of this pathway is shown in recently reported data on the low-temperature oxidation of isopentanol and isobutanol. In these systems, water elimination is a major pathway, and is likely ubiquitous in low-temperature alcohol oxidation. These findings will substantially alter current alcohol oxidation mechanisms. Moreover, the methods described will be useful for the more general phenomenon of interacting radical and zwitterionic states. © 2013 American Chemical Society.

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Butanol isomers are promising next-generation biofuels. Their use in internal combustion applications, especially those relying on low-temperature autoignition, requires an understanding of their low-temperature combustion chemistry. Whereas the high-temperature oxidation chemistry of all four butanol isomers has been the subject of substantial experimental and theoretical efforts, their low-temperature oxidation chemistry remains underexplored. In this work we report an experimental study on the fundamental low-temperature oxidation chemistry of two butanol isomers, tert-butanol and isobutanol, in low-pressure (4-5.1 Torr) experiments at 550 and 700 K. We use pulsed-photolytic chlorine atom initiation to generate hydroxyalkyl radicals derived from tert-butanol and isobutanol, and probe the chemistry of these radicals in the presence of an excess of O2 by multiplexed time-resolved tunable synchrotron photoionization mass spectrometry. Isomer-resolved yields of stable products are determined, providing insight into the chemistry of the different hydroxyalkyl radicals. In isobutanol oxidation, we find that the reaction of the a-hydroxyalkyl radical with O2 is predominantly linked to chain-terminating formation of HO2. The Waddington mechanism, associated with chain-propagating formation of OH, is the main product channel in the reactions of O2 with b-hydroxyalkyl radicals derived from both tert-butanol and isobutanol. In the tert-butanol case, direct HO2 elimination is not possible in the b-hydroxyalkyl + O2 reaction because of the absence of a beta C-H bond; this channel is available in the b-hydroxyalkyl + O2 reaction for isobutanol, but we find that it is strongly suppressed. Observed evolution of the main products from 550 to 700 K can be qualitatively explained by an increasing role of hydroxyalkyl radical decomposition at 700 K. © 2012 The Combustion Institute. Published by Elsevier Inc. All rights reserved.

Product formation in laser-photolytic Cl-initiated low-temperature (550-700 K) oxidation of isobutane in a slow-flow reactor was investigated by tunable synchrotron photoionization mass spectrometry. These experiments probed the time-resolved formation of products following photolytic initiation of the oxidation, and identify isomeric species by their photoionization spectra. The relative yields of oxygenated product isomers (2,2-dimethyloxirane, methylpropanal, and 3-methyloxetane) are in reasonable concord with measurements from Walker and co-workers (J. Chem. Soc. Faraday Trans. 74 (1) (1978) 2229-2251) at higher temperature. Oxidation of isotopically labeled isobutane, (CH3)3CD, suggests that methylpropanal formation can proceed from both (CH3)2CCH2OOH and CH 3CH(CH2)CH2OOH isomers. Bimodal time behavior is observed for product formation; the initial prompt formation reflects "formally direct" channels, principally chemical activation, and the longer-timescale "delayed" component arises from dissociation of thermalized ROO and QOOH radicals. The proportion of prompt to delayed signal is smaller for the oxygenated products than for the isobutene product. This channel-specific behavior can be qualitatively understood by considering the different energetic distributions of ROO and QOOH in formally direct vs. thermal channels and the fact that the transition states involved in the formation of oxygenated products are "tighter" than that for isobutene formation. © 2012 Published by Elsevier Inc. on behalf of The Combustion Institute.

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The reaction of O(3P) with propene (C3H6) has been examined using tunable vacuum ultraviolet radiation and time-resolved multiplexed photoionization mass spectrometry at 4 Torr and 298 K. The temporal and isomeric resolution of these experiments allow the separation of primary from secondary reaction products and determination of branching ratios of 1.00, 0.91 ± 0.30, and 0.05 ± 0.04 for the primary product channels CH3 + CH2CHO, C2H5 + HCO, and H2 + CH3CHCO, respectively. The H + CH3CHCHO product channel was not observable for technical reasons in these experiments, so literature values for the branching fraction of this channel were used to convert the measured product branching ratios to branching fractions. The results of the present study, in combination with past experimental and theoretical studies of O(3P) + C3H6, identify important pathways leading to products on the C3H6O potential energy surface (PES). The present results suggest that up to 40% of the total product yield may require intersystem crossing from the initial triplet C3H6O PES to the lower-lying singlet PES. © the Owner Societies.

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Earlier synchrotron photoionization mass spectrometry experiments suggested a prominent ring-opening channel in the OH-initiated oxidation of cyclohexene, based on comparison of product photoionization spectra with calculated spectra of possible isomers. The present work re-examines the OH + cyclohexene reaction, measuring the isomeric products of OH-initiated oxidation of partially and fully deuterated cyclohexene. In particular, the directly measured photoionization spectrum of 2-cyclohexen-1-ol differs substantially from the previously calculated Franck-Condon envelope, and the product spectrum can be fit with no contribution from ring-opening. Measurements of H 2O 2 photolysis in the presence of C 6D 10 establish that the addition-elimination product incorporates the hydrogen atom from the hydroxyl radical reactant and loses a hydrogen (a D atom in this case) from the ring. Investigation of OH + cyclohexene-4,4,5,5-d 4 confirms this result and allows mass discrimination of different abstraction pathways. Products of 2-hydroxycyclohexyl-d 10 reaction with O 2 are observed upon adding a large excess of O 2 to the OH + C 6D 10 system. © 2012 American Chemical Society.

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Using synchrotron-generated vacuum-ultraviolet radiation and multiplexed time-resolved photoionization mass spectrometry we have measured the absolute photoionization cross-section for the propargyl (C 3H 3) radical, σ propargyl ion (E), relative to the known absolute cross-section of the methyl (CH 3) radical. We generated a stoichiometric 1:1 ratio of C 3H 3 : CH 3 from 193 nm photolysis of two different C 4H 6 isomers (1-butyne and 1,3-butadiene). Photolysis of 1-butyne yielded values of σ propargyl ion (10.213 eV)=(26.1±4.2) Mb and σ propargyl ion (10.413 eV)=(23.4±3.2) Mb, whereas photolysis of 1,3-butadiene yielded values of σ propargyl ion (10.213 eV)=(23.6±3.6) Mb and σ propargyl ion (10.413 eV)=(25.1±3.5) Mb. These measurements place our relative photoionization cross-section spectrum for propargyl on an absolute scale between 8.6 and 10.5 eV. The cross-section derived from our results is approximately a factor of three larger than previous determinations. © 2012 American Institute of Physics.

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Although the propene+OH reaction has been in the center of interest of numerous experimental and theoretical studies, rate coefficients have never been determined experimentally between ∼600 and ∼ 750 K, where the reaction is governed by the complex interaction of addition, back-dissociation and abstraction. In this work OH time-profiles are measured in two independent laboratories over a wide temperature region (200-950 K) and are analyzed incorporating recent theoretical results. The datasets are consistent both with each other and with the calculated rate coefficients. We present a simplified set of reactions validated over a broad temperature and pressure range, that can be used in smaller combustion models for propene+OH. In addition, the experimentally observed kinetic isotope effect for the abstraction is rationalized using ab initio calculations and variational transition-state theory. We recommend the following approximate description of the OH+C 3H6 reaction: C3H6+OH⇄C 3H6OH (R1a,R-1a) C3H6+OH→C 3H5+H2O (R1b) k1a(200K ≤ T ≤ 950 K;1 bar ≤ P) = 1.45×10-11 (T/K)-0.18e 460K/Tcm3 molecule-1s-1 k -1a(200 K ≤ T ≤ 950 K; 1 bar ≤ P) = 5.74×10 12e-12690K/Ts-1 k1b(200 K ≤ T ≤ 950 K) = 1.63×10-18 (T/K)2.36e -725K/T cm3 molecule-1s-1. © by Oldenbourg Wissenschaftsverlag, München.

The gas-phase CN + propene reaction is investigated using synchrotron photoionization mass spectrometry (SPIMS) over the 9.8 - 11.5 eV photon energy range. Experiments are conducted at room temperature in 4 Torr of He buffer gas. The CN + propene addition reaction produces two distinct product mass channels, C 3H 3N and C 4H 5N, corresponding to CH 3 and H elimination, respectively. The CH 3 and H elimination channels are measured to have branching fractions of 0.59 ± 0.15 and 0.41 ± 0.10, respectively. The absolute photoionization cross sections between 9.8 and 11.5 eV are measured for the three considered H-elimination coproducts: 1-, 2-, and 3-cyanopropene. Based on fits using the experimentally measured photoionization spectra for the C 4H 5N mass channel and contrary to the previous study (Int. J. Mass. Spectrom.2009, 280, 113 - 118), where it was concluded that 3-cyanopropene was not a significant product, the new data suggests 3-cyanopropene is produced in significant quantity along with 1-cyanopropene, with isomer branching fractions from this mass channel of 0.50 ± 0.12 and 0.50 ± 0.24, respectively. However, similarities between the 1-, 2-, and 3-cyanopropene photoionization spectra make an unequivocal assignment difficult based solely on photoionization spectra. The CN + CH 2CHCD 3 reaction is studied and shows, in addition to the H-elimination product signal, a D-elimination product channel (m/z 69, consistent with CH 2CHCD 2CN), providing further evidence for the formation of the 3-cyanopropene reaction product. © 2011 American Chemical Society.

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Long chain alcohols possess major advantages over ethanol as bio-components for gasoline, including higher energy content, better engine compatibility, and less water solubility. Rapid developments in biofuel technology have made it possible to produce C{sub 4}-C{sub 5} alcohols efficiently. These higher alcohols could significantly expand the biofuel content and potentially replace ethanol in future gasoline mixtures. This study characterizes some fundamental properties of a C{sub 5} alcohol, isopentanol, as a fuel for homogeneous-charge compression-ignition (HCCI) engines. Wide ranges of engine speed, intake temperature, intake pressure, and equivalence ratio are investigated. The elementary autoignition reactions of isopentanol is investigated by analyzing product formation from laser-photolytic Cl-initiated isopentanol oxidation. Carbon-carbon bond-scission reactions in the low-temperature oxidation chemistry may provide an explanation for the intermediate-temperature heat release observed in the engine experiments. Overall, the results indicate that isopentanol has a good potential as a HCCI fuel, either in neat form or in blend with gasoline.

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The world currently faces tremendous energy challenges stemming from the need to curb potentially catastrophic anthropogenic climate change. In addition, many nations, including the United States, recognize increasing political and economic risks associated with dependence on uncertain and limited energy sources. For these and other reasons the chemical composition of transportation fuels is changing, both through introduction of nontraditional fossil sources, such as oil sands-derived fuels in the US stream, and through broader exploration of biofuels. At the same time the need for clean and efficient combustion is leading engine research towards advanced low-temperature combustion strategies that are increasingly sensitive to this changing fuel chemistry, particularly in the areas of pollutant formation and autoignition. I will highlight the new demands that advanced engine technologies and evolving fuel composition place on investigations of fundamental reaction chemistry. I will focus on recent progress in measuring product formation in elementary reactions by tunable synchrotron photoionization, on the elucidation of pressure-dependent effects in the reactions of alkyl and substituted alkyl radicals with O{sub 2}, and on new combined efforts in fundamental combustion chemistry and engine performance studies of novel potential biofuels.

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Autoignition chemistry is central to predictive modeling of many advanced engine designs that combine high efficiency and low inherent pollutant emissions. This chemistry, and especially its pressure dependence, is poorly known for fuels derived from heavy petroleum and for biofuels, both of which are becoming increasingly prominent in the nation's fuel stream. We have investigated the pressure dependence of key ignition reactions for a series of molecules representative of non-traditional and alternative fuels. These investigations combined experimental characterization of hydroxyl radical production in well-controlled photolytically initiated oxidation and a hybrid modeling strategy that linked detailed quantum chemistry and computational kinetics of critical reactions with rate-equation models of the global chemical system. Comprehensive mechanisms for autoignition generally ignore the pressure dependence of branching fractions in the important alkyl + O{sub 2} reaction systems; however we have demonstrated that pressure-dependent 'formally direct' pathways persist at in-cylinder pressures.

The combustion of 1-propanol and 2-propanol was studied in low-pressure, premixed flat flames using two independent molecular-beam mass spectrometry (MBMS) techniques. For each alcohol, a set of three flames with different stoichiometries was measured, providing an extensive data base with in total twelve conditions. Profiles of stable and intermediate species, including several radicals, were measured as a function of height above the burner. The major-species mole fraction profiles in the 1-propanol flames and the 2-propanol flames of corresponding stoichiometry are nearly identical, and only small quantitative variations in the intermediate species pool could be detected. Differences between flames of the isomeric fuels are most pronounced for oxygenated intermediates that can be formed directly from the fuel during the oxidation process. The analysis of the species pool in the set of flames was greatly facilitated by using two complementary MBMS techniques. One apparatus employs electron ionization (EI) and the other uses VUV light for single-photon ionization (VUV-PI). The photoionization technique offers a much higher energy resolution than electron ionization and as a consequence, near-threshold photoionization-efficiency measurements provide selective detection of individual isomers. The EI data are recorded with a higher mass resolution than the PI spectra, thus enabling separation of mass overlaps of species with similar ionization energies that may be difficult to distinguish in the photoionization data. The quantitative agreement between the EI- and PI-datasets is good. In addition, the information in the EI- and PI-datasets is complementary, aiding in the assessment of the quality of individual burner profiles. The species profiles are supplemented by flame temperature profiles. The considerable experimental efforts to unambiguously assign intermediate species and to provide reliable quantitative concentrations are thought to be valuable for improving the mechanisms for higher alcohol combustion.

The rate coefficient for the self-reaction of vinyl radicals has been measured by two independent methods. The rate constant as a function of temperature at 20 Torr has been determined by a laser-photolysis/laser absorption technique. Vinyl iodide is photolyzed at 266 nm, and both the vinyl radical and the iodine atom photolysis products are monitored by laser absorption. The vinyl radical concentration is derived from the initial iodine atom concentration, which is determined by using the known absorption cross section of the iodine atomic transition to relate the observed absorption to concentration. The measured rate constant for the self-reaction at room temperature is approximately a factor of 2 lower than literature recommendations. The reaction displays a slightly negative temperature dependence, which can be represented by a negative activation energy, (E{sub a}/R) = -400 K. The laser absorption results are supported by independent experiments at 298 K and 4 Torr using time-resolved synchrotron-photoionization mass-spectrometric detection of the products of divinyl ketone and methyl vinyl ketone photolysis. The photoionization mass spectrometry experiments additionally show that methyl + propargyl are formed in the vinyl radical self-reaction, with an estimated branching fraction of 0.5 at 298 K and 4 Torr.

The OH concentration in the Cl-initiated oxidation of cyclohexane has been measured between 6.5-20.3 bar and in the 586-828 K temperature range by a pulsed-laser photolytic initiation--laser-induced fluorescence method. The experimental OH profiles are modeled by using a master-equation-based kinetic model as well as a comprehensive literature mechanism. Below 700 K OH formation takes place on two distinct time-scales, one on the order of microseconds and the other over milliseconds. Detailed modeling demonstrates that formally direct chemical activation pathways are responsible for the OH formation on short timescales. These results establish that formally direct pathways are surprisingly important even for relatively large molecules at the pressures of practical combustors. It is also shown that remaining discrepancies between model and experiment are attributable to low-temperature chain branching from the addition of the second oxygen to hydroperoxycyclohexyl radicals.

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