Publications

Talin, A.A., Fuller, E.J., Li, Y., Marinella, M., Sugar, J.D., Bennett, C., Bartsch, M.S., Horton, R.D., Yoo, S., Ashby, D.S., & Lu, E. (2020). Filament-Free Bulk Resistive Memory Enables Deterministic Analogue Switching. Advanced Materials, 32(45). 10.1002/adma.202003984

Bartsch, M.S., Krishnakumar, R., Sinha, A., Patel, K., Bird, S.W., & Edwards, H.S. (2019). Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-47857-3

Krishnakumar, R., Bartsch, M.S., Patel, K., Branda, S., Schoeniger, J.S., Sinha, A., Jayamohan, H., Bird, S.W., & Edwards, H.S. (2018). Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias. Scientific Reports, 8(1). 10.1038/s41598-018-21484-w

Bartsch, M.S., Uhnak, N.E.F., Morrison, S.S., Hara, N.J.'., Edwards, H., & Grate, J. (2018). Manipulation of mass transport rates using bead-in-a-tube method. Journal of Chromatography, 1586. 10.1016/j.chroma.2018.12.002

Bartsch, M.S., Bird, S., Branda, S., Edwards, H., Jayamohan, H., Krishnakumar, R., Patel, K., Schoeniger, J.S., & Sinha, A. (2018). Real-Time Automated Pathogen Identification by Enhanced Ribotyping (RAPIER) LDRD Final Report. 10.2172/1481615

Bartsch, M.S., Branda, S., Foulk, J.W., Krishnakumar, R., Sinha, A., Edwards, H., Bird, S., Jayamohan, H., & Patel, K. (2018). LDRD Ending Project ReviewReal-time Automated Pathogen Identification by Enhanced Ribotyping (RAPIER) [Presentation]. https://www.osti.gov/biblio/1806834

Bartsch, M.S., Krishnakumar, R., Sinha, A., Patel, K., & Edwards, H. (2018). Real-Time Selective Sequencing with RUBRIC (Read Until with Basecall- and Reference-Informed Criteria) [Conference Poster]. https://www.osti.gov/biblio/1515754

Bartsch, M.S., Krishnakumar, R., Sinha, A., Patel, K., & Edwards, H. (2018). Read Until with Basecall- and Reference Informed Criteria (RUBRIC) [Conference Poster]. https://www.osti.gov/biblio/1501981

Bartsch, M.S., Krishnakumar, R., Sinha, A., Schoeniger, J.S., Branda, S., Patel, K., Edwards, H., Bird, S., & Jayamohan, H. (2018). Characterizing the Performance of the MinION for Real-Time Detection [Conference Poster]. https://www.osti.gov/biblio/1503084

Bartsch, M.S., Edwards, H.S., Krishnakumar, R., Sinha, A., & Patel, K. (2018). Read Until with Basecall- and Reference-Informed Criteria [Conference Poster]. https://www.osti.gov/biblio/1501982

Bartsch, M.S., Edwards, H.S., Krishnakumar, R., Sinha, A., & Patel, K. (2018). The Evolution of MinION Selective Sequencing: Read Until with Basecall- and Reference-Informed Criteria (RUBRIC) [Conference Poster]. https://www.osti.gov/biblio/1501983

Krishnakumar, R., Bartsch, M.S., Patel, K., Branda, S., Schoeniger, J.S., Edwards, H., Bird, S., & Jayamohan, H. (2017). Selective Long-Read Nanopore Sequencing for Real-Time Point-of-need Pathogen Identification [Conference Poster]. https://www.osti.gov/biblio/1511977

Krishnakumar, R., Edwards, H., Sinha, A., Bird, S., Patel, K., & Bartsch, M.S. (2017). Selective Long-Read Nanopore Sequencing for Rapid Real-Time Pathogen Identification [Presentation]. https://www.osti.gov/biblio/1510603

Jayamohan, H., Sinha, A., Krishnakumar, R., Edwards, H., Younis, T., Trevithick, J., Patel, K., & Bartsch, M.S. (2017). Library Preparation and Analysis Methods for the Oxford MinION Nanopre Sequencer for Pathogen Identification [Conference Poster]. https://www.osti.gov/biblio/1481358

Patel, K., Jayamohan, H., Sinha, A., Krishnakumar, R., Edwards, H., Younis, T., Trevithick, J., & Bartsch, M.S. (2017). LIBRARY PREPARATION FOR THE OXFORD MINION SEQUENCER WITH ?ASPIRE?: AUTOMATED SAMPLE PREP BY INDEXED ROTARY EXCHANGE [Conference Poster]. https://www.osti.gov/biblio/1463418

Feng, P.L., Kulp, T.J., Goldsmith, J.E.M., Bartsch, M.S., Roberts, N.D., & Abbott, R. (2017). Proliferation UPR ( University Program Review )poster [Conference Poster]. https://www.osti.gov/biblio/1431739

Jayamohan, H., Bartsch, M.S., Krishnakumar, R., Patel, K., Branda, S., Sinha, A., Edwards, H., Throckmorton, D.J., Bird, S.W., & Schoeniger, J.S. (2017). Nanopore Sequencing for Real-Time Pathogen Identification [Conference Poster]. https://www.osti.gov/biblio/1507629

Bartsch, M.S., Krishnakumar, R., Sinha, A., Bird, S.W., Schoeniger, J.S., & Patel, K. (2016). Real-Time Automated Pathogen Identification by Enhanced Ribotyping (RAPIER) [Conference Poster]. https://www.osti.gov/biblio/1422120

Bartsch, M.S. (2015). Microfluidic Sample Prep Automation [PowerPoint] [Presentation]. https://www.osti.gov/biblio/1338011

Bartsch, M.S., Edwards, H.S., Lee, D., Moseley, C.E., Tew, K.E., Renzi, R.F., van de Vreugde, J.L., Kim, H., Knight, D.L., Sinha, A., Branda, S., & Patel, K. (2015). The rotary zone thermal cycler: A low-power system enabling automated rapid PCR. PLoS ONE, 10(3). 10.1371/journal.pone.0118182

Branda, S., Jebrail, M.J., Sinha, A., Renzi, R.F., Bartsch, M.S., van de Vreugde, J.L., Gondhalekar, C., Amriz, C., Schoeniger, J.S., Meagher, R.J., & Patel, K. (2014). Advanced Diagnostic and Sample Preparation Platform for Early Threat Surveillance. 10.2172/1490544

Bartsch, M.S. (2013). Advanced Digital Microfluidic Interface for Sample Prep Automation - LDRD summary [Presentation]. https://www.osti.gov/biblio/1673688

Bartsch, M.S. (2013). DHS Internship Final Paper [Presentation]. https://www.osti.gov/biblio/1664735

Bartsch, M.S. (2013). DHS Internship Final Report [Presentation]. https://www.osti.gov/biblio/1664734

Kim, H., Jebrail, M.J., Sinha, A., Bent, Z., Solberg, O.D., Williams, K.P., Langevin, S.A., Renzi, R.F., van de Vreugde, J.L., Meagher, R.J., Schoeniger, J.S., Lane, T., Branda, S., Bartsch, M.S., & Patel, K.D. (2013). A Microfluidic DNA Library Preparation Platform for Next-Generation Sequencing. PLoS ONE, 8(7). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84880646994&origin=inward

Renzi, R.F., Patel, K., & Bartsch, M.S. (2013). Automated DNA Extraction and Amplification for Portable Forensic Analysis [Presentation]. https://www.osti.gov/biblio/1650295

Bartsch, M.S. (2012). DNA fingerprinting to go [Presentation]. https://www.osti.gov/biblio/1647805

Thaitrong, N., Patel, K., Renzi, R.F., Bartsch, M.S., & Meagher, R.J. (2012). Capillary PCR and Chip Electrophoresis for Rapid Detection of Carbapenamese genes in Klebsiella pneumoniae [Conference]. https://www.osti.gov/biblio/1290193

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Characterization of Pathogens in Clinical Specimens via Suppression of Host Background for Efficient Second Generation Sequencing Analyses [Conference]. https://www.osti.gov/biblio/1141142

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Copy of Automated Molecular Biology Platform Enabling Rapid & Efficient SGS Analysis of Pathogens in Clinical Samples [Presentation]. https://www.osti.gov/biblio/1688623

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Automated Molecular Biology Platform Enabling Rapid & Efficient SGS Analysis of Pathogens in Clinical Samples [Conference]. https://www.osti.gov/biblio/1067707

Bartsch, M.S., & Jebrail, M.J. (2012). Digital Microfluidics: A Versatile Tool For Applications in Chemistry Biology and Medicine. Lab on a Chip. https://www.osti.gov/biblio/1078582

Kim, H., Renzi, R.F., Patel, K., van de Vreugde, J.L., Thaitrong, N., & Bartsch, M.S. (2012). Sandia Digital Microfluidic Hub [Presentation]. https://www.osti.gov/biblio/1657398

Jebrail, M.J., Kim, H., Thaitrong, N., Bartsch, M.S., Renzi, R.F., & Patel, K.D. (2012). Integrated microfluidic hub for automated prepration of dna libraries for personalized sequencing systems [Conference]. Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2012. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84901782783&origin=inward

Kim, H., Bartsch, M.S., Renzi, R.F., He, J., van de Vreugde, J.L., Claudnic, M.R., & Patel, K.D. (2011). Automated Digital Microfluidic Sample Preparation for Next-Generation DNA Sequencing. Journal of Laboratory Automation, 16(6), pp. 405-414. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=82855178722&origin=inward

Thaitrong, N., Kim, H., Renzi, R.F., Meagher, R.J., & Bartsch, M.S. (2011). INTEGRATED DIGITAL MICROFLUIDIC PLATFORM FOR QUALITY CONTROL IN NEXT-GENERATION SEQUENCING LIBRARY PREPARATION [Conference]. https://www.osti.gov/biblio/1106744

Kim, H., Renzi, R.F., Thaitrong, N., van de Vreugde, J.L., & Bartsch, M.S. (2011). AUTOMATED SAMPLE PREPARATION PLATFORM FOR NEXT GENERATION DNA SEQUENCING USING A DIGITAL MICROFLUIDIC HUB [Conference]. https://www.osti.gov/biblio/1106718

Kim, H., Bartsch, M.S., & Renzi, R.F. (2011). Automated nucleic acid library preparation for sequence-based unknown pathogen detection [Conference]. https://www.osti.gov/biblio/1108482

Patel, K., Kim, H., Bartsch, M.S., & Renzi, R.F. (2011). Nucleic Acid Libraries Preparation for Next Generation Sequencing with a Digital Microfluidic Hub [Conference]. https://www.osti.gov/biblio/1109411

Kim, H., Bartsch, M.S., Renzi, R.F., Pezzola, G.L., Remillard, E.M., Kittlaus, E.A., He, J., & Patel, K.D. (2010). Digital microfluidic hub for automated nucleic acid sample preparation [Conference]. 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84884323406&origin=inward

Kim, H., Bartsch, M.S., Renzi, R.F., & He, J. (2010). Digital microfluidic hub for automated nucleic acid sample preparation [Conference]. https://www.osti.gov/biblio/1030340

Perroud, T., Lane, T., Kaiser, J.N., Singh, A.K., Patel, K., & Bartsch, M.S. (2008). Bioanalysis Approaches Applied to Biosecurity Problems [Conference]. https://www.osti.gov/biblio/1146342

Bartsch, M.S., McCrink, M., Mosier, B.P., Crocker, R.W., & Patel, K. (2007). ELECTROKINETIC PUMPING OF LIQUID PROPELLANTS FOR SMALL SATELLITE MICROTHRUSTER APPLICATIONS. Sensors and Actuators-B. https://www.osti.gov/biblio/1147395