Publications

Nguyen, B., Whitmore, L.S., George, A., Hudson, C.M., & Hudson, C.M. (2021). Evaluating causal-based feature selection for fuel property prediction models [Conference Poster]. Statistical Analysis and Data Mining. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85105425736&origin=inward

Kuo, T.T., Bath, T., Ma, S., Pattengale, N.D., Yang, M., Cao, Y., Chen, F., Ding, Y., Hudson, C.M., Kim, J., Pan, G., Post, K., Xiong, L., Sofia, H.J., Ohno-MacHado, L., & Ohno-MacHado, L. (2021). Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track. International Journal of Medical Informatics, 154. https://doi.org/10.1016/j.ijmedinf.2021.104559

Hudson, C.M. (2021). Emulytics in Genome Security: Use Cases [Presentation]. https://www.osti.gov/biblio/1855564

Nguyen, B., Davis, R., George, A., Hudson, C.M., & Hudson, C.M. (2020). RetSynth aids in the identification of model platform organisms for the biochemical synthesis of MCCI and SI fuels [Conference Poster]. https://www.osti.gov/biblio/1770046

Nguyen, B., Whitmore, L., George, A., Hudson, C.M., & Hudson, C.M. (2020). Causal inference modeling for feature selection of QSAR machine learning models [Conference Poster]. https://www.osti.gov/biblio/1765639

Hudson, C.M. (2020). Digital Biosecurity Pilot Project. https://doi.org/10.2172/1596230

Hudson, C.M. (2020). From Buffer-Overflowing Genomic Tools to Securing Biomedical File Formats [Presentation]. https://www.osti.gov/biblio/1761039

Hudson, C.M. (2019). Biodefense at Sandia National Laboratories [Presentation]. https://www.osti.gov/biblio/1646265

Pattengale, N.D., Hudson, C.M., & Hudson, C.M. (2019). iDASH 2019 ? Track 1 Methods [Conference Poster]. https://www.osti.gov/biblio/1643037

Whitmore, L.S., Nguyen, B., Pinar, A., George, A., Hudson, C.M., & Hudson, C.M. (2019). RetSynth: Determining all optimal and sub-optimal synthetic pathways that facilitate synthesis of target compounds in chassis organisms. BMC Bioinformatics, 20(1). https://doi.org/10.1186/s12859-019-3025-9

Hudson, C.M., Fracchia, C., & Fracchia, C. (2019). From Buffer-Overflowing Genomic Tools to Securing Biomedical File Formats [Conference Poster]. https://www.osti.gov/biblio/1642128

Hudson, C.M. (2019). Cybersecurity in DNA Design and Verification Tools: Risks and Solutions [Presentation]. https://www.osti.gov/biblio/1645972

Hudson, C.M., Oehman, C., & Oehman, C. (2019). Blue Ribbon Panel Remarks [Conference Poster]. https://www.osti.gov/biblio/1642569

Goodman, E., Zimmerman, C., Hudson, C.M., & Hudson, C.M. (2019). Packet2Vec: Utilizing Word2Vec for Feature Extraction in Packet Data [Conference Poster]. https://www.osti.gov/biblio/1641260

Whitmore, L.S., Hudson, C.M., George, A., & George, A. (2019). Optimizing genetic manipulation of microbial organisms for production of multiple target chemical compounds [Conference Poster]. https://www.osti.gov/biblio/1640934

Whitmore, L.S., Hudson, C.M., George, A., & George, A. (2019). Retrosynthesis of All Available Pathways to Microbial Production of Precursors to Target Chemicals Based on Chemical Separation Characteristics [Conference Poster]. https://www.osti.gov/biblio/1640932

Whitmore, L.S., George, A., Hudson, C.M., & Hudson, C.M. (2019). BioRetroSynthesis: A tool for identifying optimal metabolic pathways for production of a target compound [Conference Poster]. https://www.osti.gov/biblio/1640935

Landera, A., Whitmore, L.S., George, A., Hudson, C.M., & Hudson, C.M. (2019). Computational tools for advancing discovery of bio-fuels [Conference Poster]. https://www.osti.gov/biblio/1640933

Hudson, C.M. (2019). Genomic and Synthetic Biology Cybersecurity [Presentation]. https://www.osti.gov/biblio/1645206

Goodman, E., Zimmerman, C., Hudson, C.M., & Hudson, C.M. (2019). Packet2Vec: Utilizing Word2Vec for Feature Extraction in Packet Data [Conference Poster]. https://www.osti.gov/biblio/1640143

Hudson, C.M. (2019). Exploiting BWA to Manipulate Raw Genomic Data In-Place [PowerPoint]. https://doi.org/10.2172/1762309

Hudson, C.M., Podlevsky, J., Williams, K.P., & Williams, K.P. (2019). Targeted Assembly of cas Gene Clusters from High Throughput Sequencing Data [Conference Poster]. https://www.osti.gov/biblio/1639517

Hudson, C.M. (2019). Modeling realistic genomic and synthetic biology facilities at scale [Conference Poster]. https://www.osti.gov/biblio/1596404

Pattengale, N.D., Ting, C., Hudson, C.M., & Hudson, C.M. (2019). Genomic Privacy and Security [Conference Poster]. https://www.osti.gov/biblio/1596403

Goodman, E., Zimmerman, C., Hudson, C.M., & Hudson, C.M. (2019). Packet2Vec: Utlizing Word2Vec for Feature Extraction in Packet Data [Conference Poster]. https://www.osti.gov/biblio/1596405