Publications

Yoo, A., Chow, E., Henderson, K., McLendon, W., Hendrickson, B.A., Çatalyürek, Ü., & Çatalyürek, Ü. (2005). A scalable distributed parallel breadth-first search algorithm on BlueGene/L [Conference]. Proceedings of the ACM/IEEE 2005 Supercomputing Conference, SC'05. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33845388971&origin=inward

McLendon, W., Hendrickson, B.A., Plimpton, S.J., Rauchwerger, L., & Rauchwerger, L. (2005). Finding strongly connected components in distributed graphs. Journal of Parallel and Distributed Computing, 65(8), pp. 901-910. https://doi.org/10.1016/j.jpdc.2005.03.007

Sala, M., Heroux, M.A., & Heroux, M.A. (2004). An overview of the Trilinos package [Conference]. https://www.osti.gov/biblio/876302

Moreland, K., Angel, E., & Angel, E. (2004). A fast high accuracy volume renderer for unstructured data [Conference]. Proceedings - IEEE Symposium on Volume Visualization and Graphics 2004. VolVis 2004. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=15944384575&origin=inward

Link, H.E., Backer, A., & Backer, A. (2004). Identifying generalities in data sets using periodic Hopfield networks : initial status report. https://doi.org/10.2172/919165

Rohrer, B.R., Pankretz, T., & Pankretz, T. (2004). Development of the augmented musculature device. https://doi.org/10.2172/920123

Brozik, S.M., Carles, E., Flemming, J.H., Bachand, G.D., Frink, L.J., & Frink, L.J. (2004). Integration of biological ion channels onto optically addressable micro-fluidic electrode arrays for single molecule characterization. https://doi.org/10.2172/920735

Boslough, M., Sprigg, J.A., Backus, G.A., Taylor, M.A., McNamara, L.A., Murphy, K., Malczynski, L.A., & Malczynski, L.A. (2004). Climate change effects on international stability : a white paper. https://doi.org/10.2172/920790

Rodrigues, A., Underwood, K.D., & Underwood, K.D. (2004). The structural simulation toolkit : a tool for bridging the architectural/microarchitectural evaluation gap [Conference]. https://www.osti.gov/biblio/1088092

Tautges, T.J. (2004). The Common Geometry Module (CGM). https://doi.org/10.2172/975245

Bernard, M., Xavier, P.G., Hart, D., Wolfenbarger, P., Glickman, M.R., & Glickman, M.R. (2004). Human behavior modeling for national security concerns [Conference]. https://www.osti.gov/biblio/890601

Baker, M.S., Plass, R., Headley, T., Walraven, J., & Walraven, J. (2004). Final report : compliant thermo-mechanical MEMS actuators, LDRD #52553. https://doi.org/10.2172/920746

Shadid, J.N., Salinger, A.G., Pawlowski, R., Lin, P.T., Hennigan, G., Tuminaro, R.S., Lehoucq, R.B., & Lehoucq, R.B. (2004). Large-scale stabilized FE computational analysis of nonlinear steady state transport/reaction systems. Proposed for publication in Computation Methods in Applied Mechanics and Engineering.. https://www.osti.gov/biblio/915168

Sala, M., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2004). Performance of fully-coupled algebraic multilevel domain decomposition preconditioners for incompressible flow and transport. Proposed for publication in International Journal for Numerical Methods in Engineering.. https://www.osti.gov/biblio/915194

Bochev, P. (2004). Locally conservative least-squares finite element methods for Darcy flows. Proposed for publication in Computer Methods in Applied Mechanics and Engineering.. https://www.osti.gov/biblio/952103

Trucano, T.G. (2004). Uncertainty quantification and multiscale mathematics [Conference]. https://www.osti.gov/biblio/893548

Sprigg, J.A., Ehlen, M., & Ehlen, M. (2004). Full employment and competition in the Aspen economic model: implications for modeling acts of terrorism. https://doi.org/10.2172/903422

Jones, B.M., Deeney, C., McKenney, J., Garasi, C.J., Mehlhorn, T., Robinson, A.C., Wunsch, S., & Wunsch, S. (2004). Seeded perturbations in wire array z-pinches [Conference]. https://www.osti.gov/biblio/964168

Bell, N.S., Tikare, V., Headley, T., Provencio, P., & Provencio, P. (2004). TEM characterization of morphological evolution in silver nanoparticles during sintering. Proposed for publication in Journal of Materials Research.. https://www.osti.gov/biblio/964537

Debenedictis, E. (2004). The path to extreme computing [Conference]. https://www.osti.gov/biblio/1144036

Davidson, G.S. (2004). An inexpensive rapid-sampling device for liquid cell cultures. Nature Methods. https://www.osti.gov/biblio/1144103

Davidson, G.S. (2004). Gene expression profiling of adult acute myeloid leukemia identifies novel biologic clusters for risk classification and outcome prediction. Blood. https://www.osti.gov/biblio/1144079

Pierson, K.H., Gee, M.W., & Gee, M.W. (2004). Nonlinear multigrid preconditioning for solid mechanics [Conference]. https://www.osti.gov/biblio/1144063

Lehoucq, R.B., Dohrmann, C.R., & Dohrmann, C.R. (2004). A primal based penalty preconditioner for elliptic saddle point systems. SIAM Journal of Numerical Analysis. https://www.osti.gov/biblio/1144099

Sprigg, J.A. (2004). Market disruption, cascading effects, and economic recovery:a life-cycle hypothesis model. https://doi.org/10.2172/903421

Knorovsky, G., MacCallum, D.O., Jones, J.F., Rohrer, B.R., & Rohrer, B.R. (2004). Microjoining in an enhanced SEM [Conference]. https://www.osti.gov/biblio/1144030

Debenedictis, E. (2004). Will Moore%3CU%2B2019%3Es Law be sufficient? [Conference]. https://www.osti.gov/biblio/1144022

Wen, Z. (2004). PRAM C:a new programming environment for fine-grain and coarse-grain parallelism. https://doi.org/10.2172/877738

Edwards, H.C. (2004). SIERRA framework for parallel adaptive multiphysics applications [Conference]. https://www.osti.gov/biblio/973359

Farnsworth, G., Kelly, J., Pryor, R., & Pryor, R. (2004). Successful technical trading agents using genetic programming. https://doi.org/10.2172/919656

Romero, L. (2004). Spin stabilized magnetic levitation of horizontal rotors. https://doi.org/10.2172/882322

Sala, M., Tuminaro, R.S., Hu, J.J., & Hu, J.J. (2004). ML 3.1 smoothed aggregation user's guide. https://doi.org/10.2172/974895

Moreland, K. (2004). A fast high accuracy volume renderer for unstructured data [Conference]. https://www.osti.gov/biblio/970270

Stewart, J. (2004). Solution verification for explicit transient dynamics problems in the presence of hourglass and contact forces. Proposed for publication in Computer Methods in Applied Mechanics and Engineering Journal.. https://www.osti.gov/biblio/964541

Oberkampf, W.L., Pilch, M., Trucano, T.G., & Trucano, T.G. (2004). Planning and prioritization of modeling, verification, and validation in computational simulation [Conference]. https://www.osti.gov/biblio/964532

Backer, A. (2004). Growth, memory and democratization of science [Conference]. https://www.osti.gov/biblio/964591

Rogers, D., Brannon, R., & Brannon, R. (2004). Visualization of salt-induced stress perturbations [Conference]. https://www.osti.gov/biblio/964590

Hemmert, K.S., Brightwell, R.B., Rodrigues, A., Murphy, R.C., Underwood, K.D., & Underwood, K.D. (2004). A hardware acceleration unit for MPE queue processing [Conference]. https://www.osti.gov/biblio/947842

Holcomb, D.J., Fossum, A., Gettemy, G., Hardy, R., Bronowski, D.R., Rivas, R., Preece, D.S., & Preece, D.S. (2004). Geomechanics of penetration : experimental and computational approaches : final report for LDRD project 38718. https://doi.org/10.2172/920840

Gaudioso, J.M., Salerno, R.M., & Salerno, R.M. (2004). Conceptual framework for biosecurity levels [Conference]. https://www.osti.gov/biblio/945180

Gaudioso, J.M., Rivera, S.B., Salerno, R.M., & Salerno, R.M. (2004). Biosecurity in a biosafety environment [Conference]. https://www.osti.gov/biblio/945198

Balmforth, M., Robinson, S., san Marchi, C., Headley, T., & Headley, T. (2004). Material characterization for inertia welding development progress report. Part I, microstructural characteristics and phase transformation of 21-6-9 inertia welds produced at Sandia National Laboratories, California. https://doi.org/10.2172/920112

Salerno, R.M., Gaudioso, J.M., & Gaudioso, J.M. (2004). A biological weapons risk assessment based on historical and technical perspectives. Nonproliferation Review, 11(3). https://doi.org/10.1080/10736700408436977

Janssen, C., Leininger, M., & Leininger, M. (2004). Scalable fault tolerant algorithms for linear-scaling coupled-cluster electronic structure methods. https://doi.org/10.2172/920444

Fossum, A., Brannon, R., & Brannon, R. (2004). Numerical treatment of mechanism-dependent characteristic times in a vicoplastic model for Salem limestone based on experimental observations [Conference]. https://www.osti.gov/biblio/965491

Jones, B.M., Deeney, C., McKenney, J., Garasi, C.J., Mehlhorn, T., Robinson, A.C., Wunsch, S., & Wunsch, S. (2004). Study of three-dimensional structure in wire array Z-Pinches by controlled seeding of axial modulations in wire radius. Physical Review Letters. https://www.osti.gov/biblio/1144089

Silling, S.A. (2004). Peridynamic fracture and damage modeling of membranes and nanofiber networks [Conference]. https://www.osti.gov/biblio/1144098

Trucano, T.G. (2004). Calibration contra validation:characterization and consequences [Conference]. https://www.osti.gov/biblio/882357

Romero, L. (2004). Hopf bifurcations in a model for dynamics of the flow in a thermosyphon. Journal of Fluid Mechanics. https://www.osti.gov/biblio/1144144

Pilch, M., Trucano, T.G., Oberkampf, W.L., & Oberkampf, W.L. (2004). The role of V&V in QMU [Conference]. https://www.osti.gov/biblio/884750

Lauer, E., Carr, R.D., & Carr, R.D. (2004). A new IP cutting plane generator [Conference]. https://www.osti.gov/biblio/965492

Slepoy, A., Thompson, M., & Thompson, M. (2004). Stability of biological networks as represented in Random Boolean Nets. https://doi.org/10.2172/919169

Tautges, T.J. (2004). Geometry short course [Conference]. https://www.osti.gov/biblio/972881

Brown, W., Backer, A., & Backer, A. (2004). Optimal neuronal tuning for finite stimulus spaces. Proposed for publication in Neural computation.. https://www.osti.gov/biblio/951690

Speed, A. (2004). Dynamic context discrimination : psychological evidence for the Sandia Cognitive Framework. https://doi.org/10.2172/975242

Bochev, P., Dohrmann, C.R., & Dohrmann, C.R. (2004). A comparative study of stabilized, equal-order finite element approximation of Darcy equations. Proposed for publication in Applied Numerical Mathematics.. https://www.osti.gov/biblio/964131

Little, C.Q., Peters, R., & Peters, R. (2004). Simulated mobile self-location using 3D range sensing and an A-Priori map [Conference]. https://www.osti.gov/biblio/973345

Martin, S., Backer, A., & Backer, A. (2004). Estimating image manifold dimension by inversion [Conference]. https://www.osti.gov/biblio/947362

Salerno, R.M., Gaudioso, J.M., & Gaudioso, J.M. (2004). A conceptual framework for biosecurity levels. Proposed for publication in Bioscience.. https://www.osti.gov/biblio/964174

Feddema, J.T., Schoenwald, D.A., Parker, E.P., Wagner, J.S., & Wagner, J.S. (2004). Analysis and control of distributed cooperative systems. https://doi.org/10.2172/919643

Debenedictis, E. (2004). Applications modeling:connecting real world problems with supercomputer design [Conference]. https://www.osti.gov/biblio/972895

Shadid, J.N., Tuminaro, R.S., Sala, M., & Sala, M. (2004). A smoother aggregation preconditioner for the solution of non-symmetric linear systems [Conference]. https://www.osti.gov/biblio/972890

Backer, A. (2004). A future for scientific discourse. Proposed for publication in Nature.. https://www.osti.gov/biblio/964155

Oberkampf, W.L., Pilch, M., Trucano, T.G., & Trucano, T.G. (2004). Planning and prioritization of modeling, verification, validation in computational simulation [Conference]. https://www.osti.gov/biblio/947818

Hart, W.E., Phillips, C.A., Berry, J., Watson, J., & Watson, J. (2004). Sensor placement in municipal water networks. Proposed for publication in the Journal of Water Resources Planning and Management.. https://www.osti.gov/biblio/951710

Wen, Z. (2004). Unified parallel C and the computing needs of Sandia National Laboratories. https://doi.org/10.2172/974878

Fossum, A.F., Brannon, R., & Brannon, R. (2004). The Sandia GeoModel : theory and user's guide. https://doi.org/10.2172/919182

Homicz, G.F. (2004). Computational Fluid Dynamic simulations of pipe elbow flow. https://doi.org/10.2172/919140

Silling, S.A. (2004). Peridynamic modeling of membranes and fibers. Proposed for publication in Peridynamic Modeling of Membranes and Fibers.. https://www.osti.gov/biblio/964544

Lin, P.T., Sala, M., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2004). Performance of multilevel preconditioners for incompressible flow with transport [Conference]. https://www.osti.gov/biblio/957685

Phipps, E.T. (2004). Periodic orbits of hybrid systems and parameter estimation via AD [Conference]. https://www.osti.gov/biblio/957683

Pilch, M., Trucano, T.G., & Trucano, T.G. (2004). Verification and validation -- Sandia Labs. Proposed for publication in DEIXIS - The DOE CSGF Annual.. https://www.osti.gov/biblio/961647

Sprigg, J.A., Jorgensen, C., Pryor, R., & Pryor, R. (2004). Approach and development strategy for an agent-based model of economic confidence. https://doi.org/10.2172/903423

Frink, L.J., Martin, M.G., & Martin, M.G. (2004). A combined molecular simulation-molecular theory method applied to a polyatomic molecule in a dense solvent. Proposed for publication in the Proceedings of the National Academy of Sciences.. https://www.osti.gov/biblio/951705

Debenedictis, E., Camp, W.J., & Camp, W.J. (2004). Beyond petascale computing : the end of the beginning or the beginning of the end? [Conference]. https://www.osti.gov/biblio/947808

Pilch, M., Trucano, T.G., & Trucano, T.G. (2004). Verification and validation -- Sandia Labs. Proposed for publication in DEIXIS - The DOE CSGF Annual.. https://www.osti.gov/biblio/964178

Carr, R.D. (2004). On the Held-Karp relaxation for the asymmetric and symmetric traveling salesman problems. Mathematical Programming, 100(3), pp. 569-587. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=17744389060&origin=inward

Swiler, L.P., Wyss, G., & Wyss, G. (2004). A user's guide to Sandia's latin hypercube sampling software : LHS UNIX library/standalone version. https://doi.org/10.2172/919175

Davidson, G.S. (2004). Appendix : supplementary information : gene expression profiling reveals novel genes for improved risk classification and outcome prediction in pediatric acute lymphoblastic leukemia : identification, validation, and cloning of OPAL1. Proposed for publication in New England Journal of Medicine.. https://www.osti.gov/biblio/964575

Leland, R.W., Camp, W.J., & Camp, W.J. (2004). Validating DOE's Office of Science "capability" computing needs. https://doi.org/10.2172/919110

Davidson, G.S. (2004). Gene expression profiling reveals novel genes for improved risk classification and outcome prediction in pediatric acute lymphoblastic leukemia : identification, validation, and cloning of OPAL1. Proposed for publication in New England Journal of Medicine.. https://www.osti.gov/biblio/964536

Tuminaro, R.S., Shadid, J.N., & Shadid, J.N. (2004). Acceleration of the Generialized Global Basis (GGB) method for nonlinear problems. Proposed for publication in Journal of Computational Physics.. https://www.osti.gov/biblio/964572

Boman, E.G., Hendrickson, B.A., & Hendrickson, B.A. (2004). Solving elliptic finite element systems in near-linear time with support preconditioners. Proposed for publication in SIAM Journal of Matrix Analysis.. https://www.osti.gov/biblio/961626

Romero, L. (2004). An analytically solvable eigenvalue problem for the linear elasticity equations. https://doi.org/10.2172/975249

Frischknecht, A.L., Frink, L.J., & Frink, L.J. (2004). Coarse-Grained Lipids II : a comparison of density functional theory and simulation. Proposed for publication in Biophysical Journal.. https://www.osti.gov/biblio/964539

Debenedictis, E. (2004). Will Moores law be sufficient? [Conference]. https://www.osti.gov/biblio/972872

Knupp, P. (2004). A comparison of inexact newton and coordinate descent mesh optimization techniques [Conference]. https://www.osti.gov/biblio/959291

Frink, L.J. (2004). Multiscale requirements in modeling cell membranes [Conference]. https://www.osti.gov/biblio/959290

Brightwell, R.B., Wen, Z., & Wen, Z. (2004). Advanced parallel programming models research and development opportunities. https://doi.org/10.2172/919129

Brightwell, R.B., Brown, J., Wen, Z., & Wen, Z. (2004). Experiences implementing sorting algorithms in Unified Parallel C. Proposed for publication in IEEE Transactions on Parallel and Distributed Systems.. https://www.osti.gov/biblio/961662

Leung, V.J., Phillips, C.A., & Phillips, C.A. (2004). Communication-aware processor allocation for supercomputers [Conference]. https://www.osti.gov/biblio/959267

Cieslewicz, J. (2004). BioNet -- systems modeling and analysis : real-time threat modeling [Conference]. https://www.osti.gov/biblio/959263

Curro, J., Frink, L.J., & Frink, L.J. (2004). Comparison of density functional theory to simulation for freely-jointed chains [Conference]. https://www.osti.gov/biblio/959080

Voth, T.E. (2004). A posteriori error estimate for a Lagrangian method applied to Euler's equations [Conference]. https://www.osti.gov/biblio/959072

Heroux, M.A. (2004). AztecOO user guide. https://doi.org/10.2172/974892

Romero, V., Swiler, L.P., & Swiler, L.P. (2004). Progressive response surfaces [Conference]. https://www.osti.gov/biblio/959302

Long, K. (2004). Sundance 2.0 tutorial. https://doi.org/10.2172/974896

Keiter, E., Hutchinson, S.A., Hoekstra, R.J., Russo, T.V., & Russo, T.V. (2004). Xyce parallel electronic simulator design : mathematical formulation, version 2.0. https://doi.org/10.2172/919137

Simmons, J.A., Fischer, A.J., Crawford, M., Abrams, B.L., Biefeld, R.M., Koleske, D., Allerman, A., Figiel, J.J., Creighton, J., Coltrin, M.E., Tsao, J.Y., Mitchell, C.C., Kerley, T.M., Wang, G.T., Bogart, K.H.A., Seager, C.H., Campbell, J., Follstaedt, D.M., Norman, A., … Waldrip, K. (2004). Final report on grand challenge LDRD project : a revolution in lighting : building the science and technology base for ultra-efficient solid-state lighting. https://doi.org/10.2172/919202

Bochev, P. (2004). Least-squares/penalty finite element methods for optimization and control problems [Conference]. https://www.osti.gov/biblio/957239