Publications

Pedretti, K. (2005). Developing Custom Firmware for the Red Storm SeaStar Network Interface [Conference]. https://www.osti.gov/biblio/1117259

Ang, J.A., Ballance, R.A., Riesen, L., Johnston, J.R., Pedretti, K.T.T., & Pedretti, K.T.T. (2005). Red Storm Capability Computing Queuing Policy [Conference]. https://www.osti.gov/biblio/1117217

Ang, J.A., Ballance, R.A., Riesen, L., Johnston, J.R., Pedretti, K.T.T., & Pedretti, K.T.T. (2005). Red Storm Capability Computing Queuing Policy [Conference]. https://www.osti.gov/biblio/1117241

Gee, M.W., Tuminaro, R.S., Pierson, K.H., & Pierson, K.H. (2005). Nonlinear nearly matrix-free algebraic multigrid for solid mechanics [Conference]. https://www.osti.gov/biblio/1021121

Pedretti, K. (2005). Developing Custom Firmware for the Red Storm SeaStar Network Interface [Conference]. https://www.osti.gov/biblio/1117249

Hooper, R., Hopkins, M.M., Pawlowski, R., Notz, P.K., Gianoulakis, S.E., & Gianoulakis, S.E. (2005). Coupling Strategies for an Electro-Thermo-Mechanical Actuator [Conference]. https://www.osti.gov/biblio/1115972

Shadid, J.N., Salinger, A.G., Pawlowski, R., Lin, P.T., Hennigan, G., Tuminaro, R.S., Lehoucq, R.B., & Lehoucq, R.B. (2005). Large-scale stabilized FE computational analysis of nonlinear steady state transport/reaction systems. Proposed for publication in Computer Methods in Applied Mechanics and Engineering.. https://www.osti.gov/biblio/971834

Schultz, P.A. (2005). Density functional theory study of the geometry, energetics and reconstruction process of Si(111) surfaces. Journal of Physical Chemistry B. https://doi.org/10.1021/la052029s

Janssens, K., Holm, E.A., Foiles, S.M., Plimpton, S.J., & Plimpton, S.J. (2005). Computing the mobility of grain boundaries. Proposed for publication in Nature Materials.. https://www.osti.gov/biblio/972129

Boman, E.G. (2005). Preconditioning and Linear Systems in Interior-Point Methods for LP [Conference]. https://www.osti.gov/biblio/1120189

Janssens, K., Holm, E.A., Foiles, S.M., Plimpton, S.J., & Plimpton, S.J. (2005). Computing the mobility of grain boundaries. Proposed for publication in Nature Materials.. https://www.osti.gov/biblio/972157

Gaudioso, J.M., Salerno, R.M., & Salerno, R.M. (2005). The infectious disease threat and laboratory biosafety [Conference]. https://www.osti.gov/biblio/969852

Carr, R.D. (2005). New facets of the STS polytope generated from known facets of the ATS polytope. Proposed for publication in the Journal of the Discrete Optimization.. https://www.osti.gov/biblio/970744

Eldred, M. (2005). Investigation of reliability method formulations in Dakota/UQ. Proposed for publication Structure & Infrastructure Engineering: Maintenance, Management, Life-Cycle Design & Performance.. https://www.osti.gov/biblio/989370

Yang, N., Headley, T., & Headley, T. (2005). Point defects in a partially dissociated wetting layer: D2O/Ru(0001) [Conference]. https://www.osti.gov/biblio/970188

Hendrickson, B.A. (2005). Combinatorial parallel and scientific computing. Proposed for publication as a book chapter in "Parallel Scientific Computing".. https://www.osti.gov/biblio/989387

Wilson, A.T. (2005). Infovis using VTK and Qt [Conference]. https://www.osti.gov/biblio/966947

Wilson, A.T., Brannon, R., & Brannon, R. (2005). Exploring 2D tensor fields using stress nets [Conference]. https://www.osti.gov/biblio/966922

Hendrickson, B.A. (2005). Scalable algorithms for semantic graph analysis [Conference]. https://www.osti.gov/biblio/966936

Wylie, B.N. (2005). Whats new in ParaView [Conference]. https://www.osti.gov/biblio/966935

Shadid, J.N. (2005). Development of transport/inversion algorithms and capabilities for countermeasures to chem/bio/rad attacks in support of homeland security [Conference]. https://www.osti.gov/biblio/966948

Sprigg, J.A. (2005). On the need and use of models to explore the role of economic confidence:a survey. https://doi.org/10.2172/903420

Schultz, P.A. (2005). Supercell issues in density functional calculations [Conference]. https://www.osti.gov/biblio/969545

Draganescu, A. (2005). Multigrid techniques for inverse problems involving imcompressible flows [Conference]. https://www.osti.gov/biblio/970304

Scovazzi, G. (2005). A multiscale discontinuous Galerkin method [Conference]. https://www.osti.gov/biblio/970287

Hetmaniuk, U., Lehoucq, R.B., & Lehoucq, R.B. (2005). Uniform accuracy of eigenpairs from a shift-invert Lanczos method. Proposed for publication in the SIAM Journal on Matrix Analysis and Applications Special Issue on Accurate Solution of Eigenvalue P.. https://www.osti.gov/biblio/972461

Jennison, D., Schultz, P.A., & Schultz, P.A. (2005). First principles (Density Functional Theory) calculations on ErT2(111) He bubble surfaces [Conference]. https://www.osti.gov/biblio/969877

Debenedictis, E. (2005). Petaflops, exaflops, and zettaflops for science and defense [Conference]. https://www.osti.gov/biblio/970283

Trucano, T.G. (2005). Verification and validation [Conference]. https://www.osti.gov/biblio/1115301

Wilson, A.T. (2005). LDRDView [Conference]. https://www.osti.gov/biblio/1115306

Brannon, R. (2005). Alternative description of MPM [Conference]. https://www.osti.gov/biblio/989359

May, E., Johnston, A.M., Watson, J., Hart, W.E., Rintoul, M.D., & Rintoul, M.D. (2005). Deciphering the genetic regulatory code using an inverse error control coding framework. https://doi.org/10.2172/922758

Pawlowski, R., Keiter, E., Hoekstra, R.J., Hutchinson, S.A., Russo, T.V., & Russo, T.V. (2005). Homotopy methods for robust circuit simulation [Conference]. https://www.osti.gov/biblio/946965

Pawlowski, R., Hooper, R., Kolda, T.G., Phipps, E.T., Bader, B., Salinger, A.G., & Salinger, A.G. (2005). Solving nonlinear systems with NOX [Conference]. https://www.osti.gov/biblio/946962

Hooper, R., Ober, C.C., Lorber, A., & Lorber, A. (2005). A comparison of edge-based scheme Newton-Krylov method operators for solving compressible flows [Conference]. https://www.osti.gov/biblio/946994

Hopkins, M.M., Hooper, R., Pawlowski, R., & Pawlowski, R. (2005). Enabling multi-physics via Newton-based coupling [Conference]. https://www.osti.gov/biblio/947382

Hooper, R., Hopkins, M.M., Pawlowski, R., & Pawlowski, R. (2005). Enabling Newton-based coupling within a multi-physics environment using NOX - an object-oriented nonlinear solver library [Conference]. https://www.osti.gov/biblio/947369

Draganescu, A. (2005). A fast multigrid method for inverting semilinear parabolic problems [Conference]. https://www.osti.gov/biblio/947339

Underwood, K.D., Rodrigues, A., & Rodrigues, A. (2005). The implications of working set analysis on supercomputing memory hierarchy design [Conference]. https://www.osti.gov/biblio/946978

Devine, K., Boman, E.G., Heaphy, R.T., Hendrickson, B.A., & Hendrickson, B.A. (2005). Load balancing via parallel hypergraph partitioners [Conference]. https://www.osti.gov/biblio/947278

Swiler, L.P., Trucano, T.G., & Trucano, T.G. (2005). Calibration Under Uncertainty. https://doi.org/10.2172/1143309

Knupp, P. (2005). A comparison of two optimization methods for mesh quality improvement. Proposed for publication in Engineering with Computers.. https://www.osti.gov/biblio/948266

Lehoucq, R.B. (2005). The algebra of modified saddle-point variational principles. Proposed for publication in Electronic Transactions on Numerical Analysis.. https://www.osti.gov/biblio/948265

Pundit, N.D. (2005). 9/13/04 News Note for LLT Meeting: Petaflops NASA Supercomputing and Red Storm [Presentation]. https://www.osti.gov/biblio/1728539

Gaudioso, J.M., Rivera, S.B., & Rivera, S.B. (2005). Are Category-A biological agents suitable for bioterrorism? [Conference]. https://www.osti.gov/biblio/948702

Rivera, S.B., Caskey, S.A., Salerno, R.M., Gaudioso, J.M., & Gaudioso, J.M. (2005). Biosecurity in a biosafety environment : a survey of the bioscience community [Conference]. https://www.osti.gov/biblio/948700

Feddema, J.T., Byrne, R.H., Lewis, C., Harrington, J.J., Kilman, D., van Leeuwen, B.P., Robinett, R.D., & Robinett, R.D. (2005). Advanced mobile networking, sensing, and controls. https://doi.org/10.2172/922748

Feddema, J.T., Dohner, J.L., & Dohner, J.L. (2005). Glider communications and controls for the sea sentry mission. https://doi.org/10.2172/922762

Garasi, C.J., Rogers, D., & Rogers, D. (2005). Prism : a multi-view visualization tool for multi-physics simulation [Conference]. https://www.osti.gov/biblio/948253

Scovazzi, G., Bochev, P., & Bochev, P. (2005). A multiscale discontinuous Galerkin method with the computational structure of a continuous Galerkin method [Conference]. https://www.osti.gov/biblio/987099

Gaudioso, J.M., Barnett, N.B., Salerno, R.M., & Salerno, R.M. (2005). A methodology for prioritizing biological threat agents [Conference]. https://www.osti.gov/biblio/947802

Wills, A.E. (2005). A functional designed to include surface effects into self-consistent density-functional theory calculations [Conference]. https://www.osti.gov/biblio/949004

Wills, A.E. (2005). Building improved functionals for self-consistent DFT by better treatment of electronic surface regions [Conference]. https://www.osti.gov/biblio/949003

Debenedictis, E. (2005). Going beyond Moore's Law to address supercomputing applications : with implications to embedded systems [Conference]. https://www.osti.gov/biblio/949835

Salinger, A.G. (2005). Analysis beyond simulation for large-scale applications using LOCA [Conference]. https://www.osti.gov/biblio/952384

Hetmaniuk, U., Lehoucq, R.B., & Lehoucq, R.B. (2005). A new Rayleigh quotient minimization algorithm based on algebraic multigrid [Conference]. https://www.osti.gov/biblio/952363

Brunner, T.A., Garasi, C.J., Haill, T.A., Mehlhorn, T., Robinson, A.C., Summers, R.M., & Summers, R.M. (2005). ALEGRA-HEDP : version 4.6. https://doi.org/10.2172/920747

Brannon, R., Bronowski, D.R., & Bronowski, D.R. (2005). Uniaxial and triaxial compression tests of silicon carbide ceramics under quasi-static loading condition. https://doi.org/10.2172/920770

Boman, E.G., Phillips, C.A., & Phillips, C.A. (2005). LDRD final report on massively-parallel linear programming : the parPCx system. https://doi.org/10.2172/921147

Swiler, L.P. (2005). Bayesian methods in CS&E models [Conference]. https://www.osti.gov/biblio/948229

Boslough, M., Peters, M.D., & Peters, M.D. (2005). Adaptive waypoints [Conference]. https://www.osti.gov/biblio/948239

Thompson, A.P., Slepoy, A., Davidson, G.S., Peters, M.D., & Peters, M.D. (2005). Acceleration of genetic algorithms using parallel tempering [Conference]. https://www.osti.gov/biblio/988539

Heffelfinger, G.S., Martino, A., Rintoul, M.D., & Rintoul, M.D. (2005). Genomes to Life Project Quartely Report October 2004. https://doi.org/10.2172/1143297

Tautges, T.J. (2005). Components and data models for mesh and geometry in FE-based parallel simulation frameworks [Conference]. https://www.osti.gov/biblio/948301

Tautges, T.J. (2005). Local topological modification of hexahedral meshes using dual-based operations : progress and application [Conference]. https://www.osti.gov/biblio/948300

Tautges, T.J. (2005). Parallel shape optimization using CAD-based geometry and mesh components [Conference]. https://www.osti.gov/biblio/948299

Wills, A.E. (2005). A functional designed to include surface effects in self-consistent DFT. Proposed for publication in Physical Review Letters.. https://www.osti.gov/biblio/990427

Parks, M.L. (2005). Analysis of Krylov subspace recycling for sequences of linear systems [Conference]. https://www.osti.gov/biblio/988494

Copps, K.D., Newman, C.K., Bova, S.W., & Bova, S.W. (2005). Implementation of a posteriori error control in the Calore finite element code [Conference]. https://www.osti.gov/biblio/988557

Sears, M.P. (2005). Newton approaches to self consistent field theories [Conference]. https://www.osti.gov/biblio/989366

Carpenter, J.H. (2005). As symmetric spreading in highly advective, disordered environments. Proposed for publication in Physical Review Letters.. https://www.osti.gov/biblio/990965

Boman, E.G., Hendrickson, B.A., & Hendrickson, B.A. (2005). Support preconditioning for FEM [Conference]. https://www.osti.gov/biblio/989365

Frischknecht, A.L., Frink, L.J., & Frink, L.J. (2005). Structure and elastic properties of lipid bilayers from molecular theory and MD simulation [Conference]. https://www.osti.gov/biblio/989361

Frink, L.J., Frischknecht, A.L., & Frischknecht, A.L. (2005). A molecular theory of coarse-grained lipids [Conference]. https://www.osti.gov/biblio/988563

Trucano, T.G. (2005). Uncertainty in verification and validation: recent perspective [Conference]. https://www.osti.gov/biblio/893545

Berry, J., Hart, W.E., Phillips, C.A., Watson, J., & Watson, J. (2005). Validation and assessment of integer programming sensor placement models [Conference]. https://www.osti.gov/biblio/950899

Tautges, T.J. (2005). Geometry and mesh components for parallel CAD-based shape optimization [Conference]. https://www.osti.gov/biblio/950900

Berry, J., Hart, W.E., Phillips, C.A., & Phillips, C.A. (2005). Water quality sensor placement in water networks with budget constraints [Conference]. https://www.osti.gov/biblio/950963

Feddema, J.T., Schubert, W.K., & Schubert, W.K. (2005). Millimeter-scale cooperative robots, micro-power, and MEMS [Conference]. https://www.osti.gov/biblio/950894

Ho, P., Jorgensen, C., Plimpton, S.J., Schmidt, R., Yarberry, V., & Yarberry, V. (2005). A 'design-to-analysis' tool for microsystem development. Proposed for publication in Journal of Micro-Electro-Mechanical Systems.. https://www.osti.gov/biblio/990424

Sala, M., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2005). Performance of multilevel preconditioners for stabilized finite element discretizations of transport/reaction systems [Conference]. https://www.osti.gov/biblio/946958

Heffelfinger, G.S., Martino, A., Rintoul, M.D., & Rintoul, M.D. (2005). Genomes to life project quarterly report June 2004. https://doi.org/10.2172/882344

Haill, T.A., Garasi, C.J., Mehlhorn, T., Robinson, A.C., Summers, R.M., & Summers, R.M. (2005). ALEGRA-MHD : version 4.6. https://doi.org/10.2172/920811

Brown, W., Faulon, J.-L., Gray, G.A., Hunt, T.W., Schoeniger, J.S., Slepoy, A., Young, M.M., & Young, M.M. (2005). Model-building codes for membrane proteins. https://doi.org/10.2172/920776

Wong, M.K., Brunner, T.A., Garasi, C.J., Haill, T.A., Mehlhorn, T., Drake, R.R., Hensinger, D.M., Robbins, J., Robinson, A.C., Summers, R.M., Voth, T.E., & Voth, T.E. (2005). ALEGRA : version 4.6. https://doi.org/10.2172/921128

Bartlett, R., Collis, S.S., Keiter, E., Ober, C.C., Smith, T.M., & Smith, T.M. (2005). Sensitivity technologies for large scale simulation. https://doi.org/10.2172/921606

Boucheron, E., Schofield, J., Drake, R.R., Edwards, H.C., Minana, M.A., Forsythe, C.A., Heaphy, R.T., Hodges, A.L., Pavlakos, C., Sturtevant, J.E., & Sturtevant, J.E. (2005). Sandia National Laboratories Advanced Simulation and Computing (ASC) software quality plan. Part 1 : ASC software quality engineering practices version 1.0. https://doi.org/10.2172/958383

Boslough, M., Peters, M.D., Pierson, A.R., & Pierson, A.R. (2005). Graduated embodiment for sophisticated agent evolution and optimization. https://doi.org/10.2172/921610

Knupp, P., Ober, C.C., & Ober, C.C. (2005). A manufactured solution for verifying CFD boundary conditions: part II [Conference]. https://www.osti.gov/biblio/952160

Sprigg, J.A. (2005). On the use of social, economic, and political factors to forecast instability. Journal of Conflict Resolution. https://www.osti.gov/biblio/1094971

Sala, M., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2005). Performance of multilevel domain decomposition preconditioners for finite element transport/reaction systems [Conference]. https://www.osti.gov/biblio/945898

Lehoucq, R.B., Hetmaniuk, U., Hetmaniuk, U., & Hetmaniuk, U. (2005). Multilevel methods for eigenspace computations in structural dynamics [Conference]. https://www.osti.gov/biblio/943938

Silling, S.A. (2005). A meshfree method based on the peridynamic model of solid mechanics. Proposed for publication in Computers and Structures., 83(17-18). https://doi.org/10.1016/j.compstruc.2004.11.026

Silling, S.A. (2005). Peridynamic modeling of material failure [Conference]. https://www.osti.gov/biblio/948234

Dixon, K.R., Lippitt, C.E., Forsythe, J.C., & Forsythe, J.C. (2005). Supervised machine learning for modeling human recognition of vehicle-driving situations [Conference]. 2005 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79957978036&origin=inward

Giunta, A.A., Swiler, L.P., Eldred, M., Hart, W.E., Phillips, C.A., Watson, J., & Watson, J. (2005). Optimization under uncertainty research and applications at Sandia National Laboratories [Conference]. https://www.osti.gov/biblio/943858

Sala, M., Heroux, M.A., & Heroux, M.A. (2005). Robust algebraic preconditioners using IFPACK 3.0. https://doi.org/10.2172/1127118

Boman, E.G., Hendrickson, B.A., & Hendrickson, B.A. (2005). Solving elliptic finite element systems in near-linear time with support preconditioners. Proposed for publication in the SIAM Journal on Matrix Analysis.. https://www.osti.gov/biblio/951697

Knupp, P., Bond, R.B., Ober, C.C., & Ober, C.C. (2005). Manufactured solutions for verifying CFD boundary conditions : a case study [Conference]. https://www.osti.gov/biblio/989352

Boman, E.G., Bozdaǧ, D., Catalyurek, U., Gebremedhin, A.H., Manne, F., & Manne, F. (2005). A scalable parallel graph coloring algorithm for distributed memory computers [Conference]. Lecture Notes in Computer Science. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=27144506674&origin=inward