Introduction to the security of pathogens in laboratory environments
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
The latency and throughput of MPI messages are critically important to a range of parallel scientific applications. In many modern networks, both of these performance characteristics are largely driven by the performance of a processor on the network interface. Because of the semantics of MPI, this embedded processor is forced to traverse a linked list of posted receives each time a message is received. As this list grows long, the latency of message reception grows and the throughput of MPI messages decreases. This paper presents a novel hardware feature to handle list management functions on a network interface. By moving functions such as list insertion, list traversal, and list deletion to the hardware unit, latencies are decreased by up to 20% in the zero length queue case with dramatic improvements in the presence of long queues. Similarly, the throughput is increased by up to 10% in the zero length queue case and by nearly 100% in the presence queues of 30 messages.
Abstract not provided.
Proliferation of degrees-of-freedom has plagued discontinuous Galerkin methodology from its inception over 30 years ago. This paper develops a new computational formulation that combines the advantages of discontinuous Galerkin methods with the data structure of their continuous Galerkin counterparts. The new method uses local, element-wise problems to project a continuous finite element space into a given discontinuous space, and then applies a discontinuous Galerkin formulation. The projection leads to parameterization of the discontinuous degrees-of-freedom by their continuous counterparts and has a variational multiscale interpretation. This significantly reduces the computational burden and, at the same time, little or no degradation of the solution occurs. In fact, the new method produces improved solutions compared with the traditional discontinuous Galerkin method in some situations.
Abstract not provided.
Proposed for publication in IEEE Engineering in Medicine and Biology Magazine.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Controlled seeding of perturbations is employed to study the evolution of wire array z-pinch implosion instabilities which strongly impact x-ray production when the 3D plasma stagnates on axis. Wires modulated in radius exhibit locally enhanced magnetic field and imploding bubble formation at discontinuities in wire radius due to the perturbed current path. Wires coated with localized spectroscopic dopants are used to track turbulent material flow. Experiments and MHD modeling offer insight into the behavior of z-pinch instabilities.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
Abstract not provided.
The success of Lagrangian contact modeling leads one to believe that important aspects of this capability may be used for multi-material modeling when only a portion of the simulation can be represented in a Lagrangian frame. We review current experience with two dual mesh technologies where one of these meshes is a Lagrangian mesh and the other is an Arbitrary Lagrangian/Eulerian (ALE) mesh. These methods are cast in the framework of an operator-split ALE algorithm where a Lagrangian step is followed by a remesh/remap step. An interface-coupled methodology is considered first. This technique is applicable to problems involving contact between materials of dissimilar compliance. The technique models the more compliant (soft) material as ALE while the less compliant (hard) material and associated interface are modeled in a Lagrangian fashion. Loads are transferred between the hard and soft materials via explicit transient dynamics contact algorithms. The use of these contact algorithms remove the requirement of node-tonode matching at the soft-hard interface. In the context of the operator-split ALE algorithm, a single Lagrangian step is performed using a mesh to mesh contact algorithm. At the end of the Lagrangian step the meshes will be slightly offset at the interface but non-interpenetrating. The ALE mesh nodes at the interface are then remeshed to their initial location relative to the Lagrangian body faces and the ALE mesh is smoothed, translated and rotated to follow Lagrangian body. Robust remeshing in the ALE region is required for success of this algorithm, and we describe current work in this area. The second method is an overlapping grid methodology that requires mapping of information between a Lagrangian mesh and an ALE mesh. The Lagrangian mesh describes a relatively hard body that interacts with softer material contained in the ALE mesh. A predicted solution for the velocity field is performed independently on both meshes. Element-centered velocity and momentum are transferred between the meshes using the volume transfer capability implemented in contact algorithms. Data from the ALE mesh is mapped to a phantom mesh that surrounds the Lagrangian mesh, providing for the reaction to the predicted motion of the Lagrangian material. Data from the Lagrangian mesh is mapped directly to the ALE mesh. A momentum balance is performed on both meshes to adjust the velocity field to account for the interaction of the material from the other mesh. Subsequent, remeshing and remapping of the ALE mesh is performed to allow large deformation of the softer material. We overview current progress using this approach and discuss avenues for future research and development.
Abstract not provided.