Publications

Jennison, D., Jennison, D., Schultz, P.A., King, D.B., Zavadil, K.R., & Zavadil, K.R. (2003). BaO/W(100) thermionic emitters and the effects of Sc, Y, La, and the density functional used in computations. Proposed for publication in Surface Science Letters., 549(2). https://www.osti.gov/biblio/993919

Carr, R.D. (2003). On the Held-Karp relaxation for the asymmetric and symmetric traveling salesman problems. Proposed for publication in Mathematical Programming.. https://www.osti.gov/biblio/972147

Hart, W.E. (2003). SGOPT User Manual Version 2.0. https://doi.org/10.2172/811713

Brown, K.H., Brown, K.H., Voth, T.E., Glass, M.W., Gullerud, A.S., Heinstein, M., Jones, R.E., & Jones, R.E. (2003). ACME: Algorithms for Contact in a Multiphysics Environment API Version 1.3. https://doi.org/10.2172/811159

Drake, R.R., Drake, R.R., Summers, R.M., & Summers, R.M. (2003). An Exploration in Implementing Fault Tolerance in Scientific Simulation Application Software. https://doi.org/10.2172/811162

Brightwell, R.B., Underwood, K.D., & Underwood, K.D. (2003). Evaluation of an eager protocol optimization for MPI [Conference]. https://www.osti.gov/biblio/924212

Riesen, R., Brightwell, R.B., Maccabe, A., & Maccabe, A. (2003). Measuring MPI latency variance [Conference]. https://www.osti.gov/biblio/924218

Thompson, A.P. (2003). Non-equilibrium molecular dynamics simulation of electroosmotic flow in a charged nanopore. Proposed for publication in the Journal of Chemical Physics.. https://doi.org/10.1063/1.1609194

Grest, G.S., Stevens, M.J., Plimpton, S.J., & Plimpton, S.J. (2003). Effect of end-tethered polymers on surface adhesion of glassy polymers. Proposed for publication in Journal Polymer Science, Part B - Polymer Physics.. https://www.osti.gov/biblio/924228

Brightwell, R.B., Maccabe, A., & Maccabe, A. (2003). An MPI tool to measure application sensitivity to variation in communication parameters [Conference]. https://www.osti.gov/biblio/924211

Adams, M.F. (2003). Applications of algebraic multigrid to large-scale finite element analysis of whole bone micro-mechanics on the IBM SP [Conference]. https://www.osti.gov/biblio/924222

Jennison, D., Schultz, P.A., Sullivan, J.P., & Sullivan, J.P. (2003). Evidence for interstitial hydrogen as the dominant electronic defect in nanometer alumina films. Proposed for publication in Physical Review B - Rapid Communications, May 2003.. https://www.osti.gov/biblio/924938

Moreland, K. (2003). The FFT on a GPU [Conference]. https://www.osti.gov/biblio/921120

Crossno, P.J., Crossno, P.J., Rogers, D., Brannon, R., & Brannon, R. (2003). Tensor visualization using Mohr's circles [Conference]. https://www.osti.gov/biblio/921123

Moreland, K., Thompson, D., & Thompson, D. (2003). From cluster to wall with VTK [Conference]. https://www.osti.gov/biblio/921132

Reutzel, A.L., Stubblefield, W.A., Kleban, S., & Kleban, S. (2003). A collaborative knowledge management system for concurrent design and manufacturing [Conference]. https://www.osti.gov/biblio/921129

Voth, T.E., Christon, M.A., Martinez, M., & Martinez, M. (2003). Generalized Fourier analyses of the advection-diffusion equation. Part I, one-dimensional domains. Proposed for publication in the International Journal for Numerical Methods in Fluids.. https://www.osti.gov/biblio/921732

Voth, T.E., Martinez, M., Christon, M.A., & Christon, M.A. (2003). Generalized Fourier analyses of the advection-diffusion equation. Part II, two-dimensional domains. Proposed for publication in the International Journal for Numerical Methods in Fluids.. https://www.osti.gov/biblio/921731

Laros, J.H., Ward, H.L., Dauchy, N.W., Vasak, J.S., Klundt, R.A., Laguna, G.A., Epperson, M., Stearley, J., & Stearley, J. (2003). The Cluster Integration Toolkit (CIT) : an extensible, portable, scalable cluster management software implementation [Conference]. https://www.osti.gov/biblio/923559

Backer, A. (2003). Visual search : amnesic or undecided?. Proposed for publication in Nature.. https://www.osti.gov/biblio/923600

Backer, A. (2003). Asymmetric sliding-window cross-correlation. Proposed for publication in J Neurosci Methods.. https://www.osti.gov/biblio/923567

Backer, A. (2003). A simple formula to accurately subtract positivity of cytometric negative controls. Proposed for publication in Flow Cytometry.. https://www.osti.gov/biblio/923566

Reutzel, A.L., Stubblefield, W.A., Kleban, S., & Kleban, S. (2003). GMS : preserving multiple expert voices in scientific knowledge management [Conference]. https://www.osti.gov/biblio/923579

Bochev, P. (2003). Analysis and computation of least-squares methods for a compressible Stokes problem. Proposed for publication in SIAM Journal of Numerical Analysis.. https://www.osti.gov/biblio/923568

Backer, A. (2003). The probability that a single underlying binomial distribution yields two given success proportions : a hypothesis test. Proposed for publication in JASA.. https://www.osti.gov/biblio/923557

Reutzel, A.L., Stubblefield, W.A., Kleban, S., & Kleban, S. (2003). A collaborative knowledge management system for concurrent design and manufacturing [Conference]. https://www.osti.gov/biblio/923554

Stubblefield, W.A., Rogers, K.S., Ingram, D.S., & Ingram, D.S. (2003). The LIGA Traveler : the use of technical and social invariants in software design [Conference]. https://www.osti.gov/biblio/923552

Brightwell, R.B., Riesen, R., Maccabe, A., & Maccabe, A. (2003). Design, implementation, and performance of MPI on Portals 3.0. International Journal of High Performance Computing Applications, 17(1), pp. 7-20. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=0037358589&origin=inward

Trucano, T.G. (2003). Statistical Validation of Engineering and Scientific Models: Validation Experiments to Application. https://doi.org/10.2172/809991

Strickland, J., Strickland, J., Porter, V.L., Homicz, G.F., & Homicz, G.F. (2003). Fluid-structure coupling for lightweight flexible bodies [Conference]. https://www.osti.gov/biblio/917120

Bunge, S., Bunge, S., Boyle, T., Rodriguez, M.A., Headley, T., & Headley, T. (2003). Growth and morphology of cadmium chalcogenides : the synthesis of nanorods, tetrapods, and spheres from CdO and Cd(O[2]CCH[3])[2]. Proposed for publication in the Journal of Chemistry and Materials.. https://www.osti.gov/biblio/917445

Hart, W.E., Hart, W.E., & Hart, W.E. (2003). Discrete sensor placement problems in distribution networks [Conference]. https://www.osti.gov/biblio/917476

Hart, W.E., Hart, W.E., Phillips, C.A., & Phillips, C.A. (2003). Sensor placement in municipal water networks [Conference]. https://www.osti.gov/biblio/917487

Hart, W.E., Hart, W.E., & Hart, W.E. (2003). An introduction to the COLIN optimization interface [Conference]. https://www.osti.gov/biblio/917455

Lehoucq, R.B., Lehoucq, R.B., & Lehoucq, R.B. (2003). A comparison of algorithms for modal analysis in the absence of a sparse direct method. Proposed for publication in International Journal for Numerical Methods in Engineering, 2003; 1:1-21.. https://www.osti.gov/biblio/917490

Hart, W.E. (2003). Discrete sensor placement problems in distribution networks [Conference]. https://www.osti.gov/biblio/1005072

Thompson, A.P., Thompson, A.P., & Thompson, A.P. (2003). Molecular Dynamics Simulation of Polymer Dissolution. https://doi.org/10.2172/808631

Stewart, J., Stewart, J., & Stewart, J. (2003). SIERRA Framework Version 3: Master Element Subsystem. https://doi.org/10.2172/809987

Forsythe, J.C., Bernard, M., Xavier, P.G., Abbott, R.G., Speed, A., Brannon, N., & Brannon, N. (2003). Engineering a transformation of human-machine interaction to an augmented cognitive relationship [Conference]. https://www.osti.gov/biblio/917160

Brightwell, R.B., Camp, W.J., Cole, B., Debenedictis, E., Leland, R.W., Tomkins, J.L., & Tomkins, J.L. (2003). Architectural specification for massively parallel computers : an experience and measurement-based approach. Proposed for publication in the Special Issue of Concurrency and Computation: Practice and Experience - The High Performance Architectural Challenge: Mass Market Versus Proprietary Components.. https://www.osti.gov/biblio/917124

Bochev, P. (2003). Least -squares finite element methods for optimization and control problems for the Stokes equations. Proposed for publication in Journal of Computers and Mathematics with Applications.. https://www.osti.gov/biblio/917152

Grest, G.S., Landry, J.W., Plimpton, S.J., & Plimpton, S.J. (2003). Dimensionality effect on stress in granular packings. Proposed for publication in Powder Technology.. https://www.osti.gov/biblio/917125

Heffelfinger, G.S., Faulon, J.-L., Frink, L.J., Haaland, D.M., Hart, W.E., Lane, T., Plimpton, S.J., Roe, D., Timlin, J.A., Martino, A., Rintoul, M.D., Davidson, G.S., & Davidson, G.S. (2003). Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling. Proposed for publication in OMICS: A Journal of Integrative Biology, Vol. 6, No.4, 2002.. https://www.osti.gov/biblio/917491

Bunge, S., Boyle, T., Headley, T., Kotula, P.G., Rodriguez, M.A., & Rodriguez, M.A. (2003). Verification, validation, and predictive capability in computational engineering and physics [Presentation]. https://doi.org/10.2172/918370

Robino, C.V., Hall, A., Brooks, J.A., Headley, T., Roach, R.A., & Roach, R.A. (2003). Solidification Diagnostics for Joining and Microstructural Simulations. https://doi.org/10.2172/808756

Gardner, T.J., McLaughlin, L.I., Mowery-Evans, D.L., & Mowery-Evans, D.L. (2003). Computational Algorithms for Device-Circuit Coupling [Presentation]. https://doi.org/10.2172/808615

Romero, L., Dickey, F.M., & Dickey, F.M. (2003). A Technique for Determining Non-Linear Circuit Parameters from Ring Down Data. https://doi.org/10.2172/808619

Ober, C.C., Ober, C.C., Payne, J.L., Lorber, A., & Lorber, A. (2003). CFD simulations for arbitrary body motion [Conference]. https://www.osti.gov/biblio/889419

Brightwell, R.B., Brightwell, R.B., Maccabe, A., Riesen, R., & Riesen, R. (2003). On the appropriateness of commodity operating systems for large-scale, balanced computing systems [Conference]. https://www.osti.gov/biblio/913524

Giunta, A.A., Giunta, A.A., Wojtkiewicz, S., Eldred, M., & Eldred, M. (2003). Overview of modern design of experiments methods for computational simulations [Conference]. https://www.osti.gov/biblio/913526

Stewart, J. (2003). SIERRA Framework Version 3: Transfer Services Design and Use. https://doi.org/10.2172/811716

Stephens, J., Stephens, J., Hosking, F., Headley, T., Hlava, P., Yost, F., & Yost, F. (2003). Reactions and reaction layers in a Ti-activated braze on sapphire. Proposed for publication in Metallurgical and Materials Transactions A.. https://www.osti.gov/biblio/913496

van Bloemen Waanders, B.G., van Bloemen Waanders, B.G., Bartlett, R., & Bartlett, R. (2003). Nonlinear programming strategies for source detection of municipal water networks [Conference]. https://www.osti.gov/biblio/915151

Bartlett, R., Bartlett, R., van Bloemen Waanders, B.G., Heroux, M.A., & Heroux, M.A. (2003). Vector reduction/transformation operators for linear algebra interfaces to efficiently develop complex abstract numerical algorithms independently of data mapping. Proposed for publication in the ACM Transactions on Mathematical Software journal.. https://www.osti.gov/biblio/915200

Swiler, L.P., Swiler, L.P., & Swiler, L.P. (2003). Prognostics for accessory drive gearboxes on fixed-wing aircraft [Conference]. https://www.osti.gov/biblio/915167

Riesen, R., Maccabe, A., & Maccabe, A. (2003). Simple, scalable protocols for high-performance local networks [Conference]. Proceedings - Conference on Local Computer Networks, LCN. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=46149102400&origin=inward

Stewart, J., Edwards, H.C., & Edwards, H.C. (2002). SIERRA Framework Version 3: h-Adaptivity Design and Use. https://doi.org/10.2172/808601

Romero, L., Dickey, F.M., & Dickey, F.M. (2002). A technique for determining non-linear circuit parameters from ring down data. Proposed for publication in the journal Inverse Problems.. https://www.osti.gov/biblio/913199

Bochev, P., Gunzburger, M., Shadid, J.N., & Shadid, J.N. (2002). On inf-sup stabilized finite element methods for transient problems. Proposed for publication in Computer Methods in Applied Mechanics and Engineering.. https://www.osti.gov/biblio/913226

Edwards, H.C. (2002). SIERRA Framework Version 3: Core Services Theory and Design. https://doi.org/10.2172/805863

Slepoy, N., Pryor, R., & Pryor, R. (2002). Analysis of Price Equilibriums in the Aspen Economic Model under Various Purchasing Methods. https://doi.org/10.2172/805866

Frink, L.J., Rempe, S.B., Means, S.A., Stevens, M.J., Crozier, P., Martin, M.G., Sears, M.P., Hjalmarson, H.P., & Hjalmarson, H.P. (2002). Predicting Function of Biological Macromolecules: A Summary of LDRD Activities: Project 10746. https://doi.org/10.2172/805869

Hutchinson, S.A., Keiter, E., Hoekstra, R.J., Waters, L., Russo, T.V., Rankin, E., Wix, S.D., & Wix, S.D. (2002). Xyce Parallel Electronic Simulator - User's Guide, Version 1.0. https://doi.org/10.2172/808595

Christon, M.A., Voth, T.E., Martinez, M., & Martinez, M. (2002). Generalized Fourier Analyses of Semi-Discretizations of the Advection-Diffusion Equation. https://doi.org/10.2172/805879

Boucheron, E., Haill, T.A., Peery, J.S., Petney, S., Robbins, J., Robinson, A.C., Summers, R.M., Voth, T.E., Wong, M.K., Brown, K.H., Budge, K.G., Burns, S.P., Carroll, D.E., Carroll, S., Christon, M.A., Drake, R.R., Garasi, C.J., & Garasi, C.J. (2002). ALEGRA: User Input and Physics Descriptions Version 4.2. https://doi.org/10.2172/805830

van Bloemen Waanders, B.G., Bartlett, R., Long, K., Boggs, P.T., Salinger, A.G., & Salinger, A.G. (2002). Large Scale Non-Linear Programming for PDE Constrained Optimization. https://doi.org/10.2172/805833

Hensinger, D.M., Johnston, G.A., Hinman-Sweeney, E., Feddema, J.T., Eskridge, S.E., & Eskridge, S.E. (2002). Self-Reconfigurable Robots. https://doi.org/10.2172/805834

Barton, D.C., Pryor, R., & Pryor, R. (2002). An Evaluation of the Convergence Properties of a Parallel Genetic Programming Method. https://doi.org/10.2172/805835

Gruebel, M.M., Cochran, J.R., & Cochran, J.R. (2002). ALEGRA Validation Studies for Regular, Mach, and Double Mach Shock Reflection in Gas Dynamics [Presentation]. https://doi.org/10.2172/801392

Dickey, F.M., Romero, L., Doerry, A.W., & Doerry, A.W. (2002). SAR Window Functions: A Review and Analysis of the Notched Spectrum Problem. https://doi.org/10.2172/801413

Pryor, R., Barton, D.C., & Barton, D.C. (2002). Developing Maneuvering Behaviors for a Glider UAV Using a Genetic Programming Model. https://doi.org/10.2172/803293

Romero, L. (2002). On the Accuracy of Operator-Splitting Methods for Problems with Multiple Time Scales. https://doi.org/10.2172/800970

Ropp, D.L. (2002). Analysis of the Modified Great Lake Equations. https://doi.org/10.2172/801405

Homicz, G.F. (2002). Three-Dimensional Wind Field Modeling: A Review. https://doi.org/10.2172/801406

Strickland, J., Homicz, G.F., Porter, V.L., & Porter, V.L. (2002). A 3-D Vortex Code for Parachute Flow Predictions: VIPAR Version 1.0. https://doi.org/10.2172/808589

Leung, V.J., Delaurentis, J.M., & Delaurentis, J.M. (2002). Maximum Utilization of Parallel Computers [Conference]. https://doi.org/10.2172/800811

Pilch, M., Froehlich, G.K., Hodges, A.L., Peercy, D.E., Trucano, T.G., Moya, J.L., & Moya, J.L. (2002). Level 1 Peer Review Process for the Sandia ASCI V and V Program: FY01 Final Report. https://doi.org/10.2172/800967

Eldred, M., Giunta, A.A., van Bloemen Waanders, B.G., Wojtkiewicz, S., Hart, W.E., & Hart, W.E. (2002). DAKOTA, A Multilevel Parallel Object-Oriented Framework for Design Optimization, Parameter Estimation, Uncertainty Quantification, and Sensitivity Analysis Version 3.0 Developers Manual (title change from electronic posting) [Presentation]. https://doi.org/10.2172/798491

Eldred, M., Giunta, A.A., van Bloemen Waanders, B.G., Wojtkiewicz, S., Hart, W.E., & Hart, W.E. (2002). DAKOTA, A Multilevel Parallel Object-Oriented Framework for Design Optimization, Parameter Estimation, Uncertainty Quantification, and Sensitivity Analysis Version 3.0 [Presentation]. https://doi.org/10.2172/800774

Robinson, A.C. (2002). Evaluation Techniques and Properties of an Exact Solution to a Subsonic Free Surface Jet Flow. https://doi.org/10.2172/800816

Feddema, J.T., Warne, L.K., Johnson, W.A., Routson, A.J., Armour, D.L., & Armour, D.L. (2002). Assembly of LIGA using Electric Fields. https://doi.org/10.2172/800946

Schunk, P.R., Heroux, M.A., Rao, R.R., Baer, T.A., Subia, S.R., Sun, A., Heroux, M.A., & Heroux, M.A. (2002). Iterative Solvers and Preconditioners for Fully-Coupled Finite Element Formulations of Incompressible Fluid Mechanics and Related Transport Problems. https://doi.org/10.2172/793401

Trucano, T.G., Pilch, M., Oberkampf, W.L., & Oberkampf, W.L. (2002). General Concepts for Experimental Validation of ASCI Code Applications. https://doi.org/10.2172/800777

Salinger, A.G., Pawlowski, R., Lehoucq, R.B., Romero, L., Wilkes, E.D., & Wilkes, E.D. (2002). LOCA 1.0 Library of Continuation Algorithms: Theory and Implementation Manual. https://doi.org/10.2172/800778

Thompson, A.P. (2002). Molecular Simulation of Reacting Systems. https://doi.org/10.2172/793349

Schmidt, R., Smith, T.M., Desjardin, P.E., Voth, T.E., Christon, M.A., Kerstein, A., Wunsch, S., & Wunsch, S. (2002). On the Development of the Large Eddy Simulation Approach for Modeling Turbulent Flow: LDRD Final Report. https://doi.org/10.2172/800791

Knupp, P. (2002). Tetrahedral mesh improvement via optimization of the element condition number. International Journal for Numerical Methods in Engineering, 53(6), pp. 1377-1391. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=0037186325&origin=inward

Brannon, R. (2002). User Manual and Supporting Information for Library of Codes for Centroidal Voronoi Point Placement and Associated Zeroth, First, and Second Moment Determination. https://doi.org/10.2172/793224

Brannon, R. (2002). An Evaluation of the Material Point Method. https://doi.org/10.2172/793336

Hills, R.G., Trucano, T.G., & Trucano, T.G. (2002). Statistical Validation of Engineering and Scientific Models: A Maximum Likelihood Based Metric. https://doi.org/10.2172/791881

Davidson, G.S. (2002). DNA Microarray Technology. https://doi.org/10.2172/791894

Oberkampf, W.L., Trucano, T.G., & Trucano, T.G. (2002). Verification and validation in computational fluid dynamics. Progress in Aerospace Sciences. https://doi.org/10.2172/793406

Leung, V.J., Arkin, E.M., Bender, M.A., Bunde, D., Johnston, J.R., Lal, A., Mitchell, J.S.B., Phillips, C., Seiden, S.S., & Seiden, S.S. (2002). Processor allocation on Cplant: Achieving general processor locality using one-dimensional allocation strategies [Conference]. Proceedings - IEEE International Conference on Cluster Computing, ICCC. https://doi.org/10.2172/800975

Wagner, J.S. (2001). A p-Adic Metric for Particle Mass Scale Organization with Genetic Divisors. https://doi.org/10.2172/791885

Pawlowski, R., Salinger, A.G., Salinger, A.G., & Salinger, A.G. (2001). Numerical Simulation of the Partial Catalytic Oxidation of Ethane to Ethylene in Short Contact Time Reactors. https://doi.org/10.2172/789248

Means, S.A., Rintoul, M.D., Shadid, J.N., Rintoul, M.D., & Rintoul, M.D. (2001). Applications of Transport/Reaction Codes to Problems in Cell Modeling. https://doi.org/10.2172/789603

Bartel, T.J., Plimpton, S.J., Gallis, M.A., & Gallis, M.A. (2001). Icarus: A 2-D Direct Simulation Monte Carlo (DSMC) Code for Multi-Processor Computers. https://doi.org/10.2172/789256

Brown, K.H., Summers, R.M., Glass, M.W., Gullerud, A.S., Heinstein, M., Jones, R.E., & Jones, R.E. (2001). ACME - Algorithms for Contact in a Multiphysics Environment API Version 1.0. https://doi.org/10.2172/789572

Nyman, M., Nenoff, T.M., Headley, T., & Headley, T. (2001). Interactions of UOP IONSIV IE-911 with Pretreatment and Simulant Solutions (UOP Batches 98-5, 99-7, 99-9). https://doi.org/10.2172/791882

Edwards, H.C., Harris, P.W., Eaton, S.M., & Eaton, S.M. (2001). SIERRA Requirements Management Process Overview. https://doi.org/10.2172/787607