Publications

Siirola, J.D. (2009). Current trends in parallel computation and the implications for modeling and optimization [Conference]. Computer Aided Chemical Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=77649332021&origin=inward

Bochev, P., Ridzal, D., & Ridzal, D. (2008). Finite element solution of optimal control problems arising in semiconductor modeling [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=70350281280&origin=inward

Pébay, P.P., Thompson, D., Shepherd, J.F., Knupp, P., Lisle, C., Magnotta, V.A., Grosland, N.M., & Grosland, N.M. (2008). New applications of the verdict library for standardized mesh verification pre, post, and end-to-end processing [Conference]. Proceedings of the 16th International Meshing Roundtable, IMR 2007. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84878169482&origin=inward

Pébay, P.P., Stephenson, M.B., Fortier, L.A., Owen, S.J., Melander, D., & Melander, D. (2008). pCAMAL: An embarrassingly parallel hexahedral mesh generator [Conference]. Proceedings of the 16th International Meshing Roundtable, IMR 2007. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84878186158&origin=inward

Hart, W.E., Berry, J., Boman, E.G., Phillips, C.A., Riesen, L., Watson, J., & Watson, J. (2008). Limited-memory techniques for sensor placement in water distribution networks [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=58449083565&origin=inward

Rohrer, B.R. (2008). Robust performance of autonomous robots in unstructured environments [Conference]. Transactions of the American Nuclear Society. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=62849126820&origin=inward

Parks, M.L., Lehoucq, R.B., Plimpton, S.J., Silling, S.A., & Silling, S.A. (2008). Implementing peridynamics within a molecular dynamics code. Computer Physics Communications, 179(11), pp. 777-783. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=52949136800&origin=inward

Knupp, P. (2008). Remarks on mesh quality [Conference]. 46th AIAA Aerospace Sciences Meeting and Exhibit. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=78149443640&origin=inward

Berry, J., Boman, E.G., Phillips, C.A., Riesen, L., & Riesen, L. (2008). Low-memory Lagrangian relaxation methods for sensor placement in municipal water networks [Conference]. World Environmental and Water Resources Congress 2008: Ahupua'a - Proceedings of the World Environmental and Water Resources Congress 2008. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79251501682&origin=inward

Djordjevich, D.D., Xavier, P.G., Bernard, M., Whetzel, J.H., Glickman, M.R., Verzi, S.J., & Verzi, S.J. (2008). Preparing for the aftermath: Using emotional agents in game-based training for disaster response [Conference]. 2008 IEEE Symposium on Computational Intelligence and Games, CIG 2008. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=70349297359&origin=inward

Hart, W.E., Berry, J., Boman, E.G., Murray, R., Phillips, C.A., Riesen, L., Watson, J., & Watson, J. (2008). The TEVA-SPOT toolkit for drinking water contaminant warning system design [Conference]. World Environmental and Water Resources Congress 2008: Ahupua'a - Proceedings of the World Environmental and Water Resources Congress 2008. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79251517756&origin=inward

Hendrickson, B.A., Laviolette, R.A., Phillips, C.A., Berry, J., & Berry, J. (2008). Tolerating the community detection resolution limit with edge weighting. Proposed for publication in the Proceedings of the National Academy of Sciences.. https://www.osti.gov/biblio/967791

Boman, E.G., Chevalier, C., & Chevalier, C. (2008). Improved parallel data partitioning by nested dissection with applications to information retrieval. Proposed for publication in Parallel Computing.. https://www.osti.gov/biblio/970310

Wylie, B.N. (2008). Open Source documentation [Presentation]. https://www.osti.gov/biblio/1698377

Leung, V.J. (2008). Recognition for Optimizing Hardware Allocation [Presentation]. https://www.osti.gov/biblio/1698373

Knupp, P. (2008). Analysis of 2D Rotation-invariant Non-Barrier Metrics in the Target-Matrix Paradigm [Presentation]. https://www.osti.gov/biblio/1700583

Garasi, C.J., Robinson, A.C., Russo, T.V., Lamppa, D.C., & Lamppa, D.C. (2008). The Xygra gun simulation tool. https://doi.org/10.2172/953729

Collins, M.J., Mitchell, S.A., & Mitchell, S.A. (2008). Distance-avoiding sequences for extremely low-bandwidth authentication [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=56449115227&origin=inward

Pawlowski, R.P., Simonis, J.P., Walker, H.F., Shadid, J.N., & Shadid, J.N. (2008). Inexact newton dogleg methods. SIAM Journal on Numerical Analysis, 46(4), pp. 2112-2132. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=55349085465&origin=inward

Boman, E.G., Hendrickson, B.A., Vavasis, S., & Vavasis, S. (2008). Solving elliptic finite element systems in near-linear time with support preconditioners. SIAM Journal on Numerical Analysis, 46(6), pp. 3264-3284. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=55349087945&origin=inward

Boslough, M., Taylor, M.A., Zak, B.D., Backus, G.A., & Backus, G.A. (2008). The Arctic as a test case for an assessment of climate impacts on national security. https://doi.org/10.2172/945918

Phipps, E.T. (2008). Stokhos: Trilinos Tools for Embedded Stochastic-Galerkin Uncertainty Quantification Methods [Conference]. https://www.osti.gov/biblio/1142497

Heroux, M.A., Williams, A.B., Crozier, P., & Crozier, P. (2008). HPC Application Performance Analysis and Prediction [Conference]. https://www.osti.gov/biblio/1142301

Brightwell, R.B., Pedretti, K., & Pedretti, K. (2008). Optimizing MPI Collectives with SMARTMAP. Proposed for publication in the ACM SIGOPS Operating System Review.. https://www.osti.gov/biblio/966265

Phillips, C.A., Carr, R.D., & Carr, R.D. (2008). Solving a Scheduling Problem for a Quantum Computing Architecture Using Constraint Programming [Conference]. https://www.osti.gov/biblio/1142423

Rothganger, F. (2008). Embodiment [Presentation]. https://www.osti.gov/biblio/1700551

Demmie, P.N., Silling, S.A., & Silling, S.A. (2008). Recent Developments in Peridynamic Theory [Conference]. https://www.osti.gov/biblio/1142317

Thompson, A.P., Budzien, J., & Budzien, J. (2008). Explosives under Shock: Simulating PETN using Reactive Molecular Dynamics [Conference]. https://www.osti.gov/biblio/1142616

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2008). Peridynamics molecular dynamics and classical (nonlinear) elasticity [Conference]. https://www.osti.gov/biblio/1142426

Hopkins, M.M., Hopkins, P.L., Hooper, R., Musson, L.C., Plimpton, S.J., Williams, A.B., & Williams, A.B. (2008). Aleph : [Conference]. https://www.osti.gov/biblio/1268300

Hart, W.E. (2008). Leveraging Flexible Frameworks for Agent-based Optimization [Conference]. https://www.osti.gov/biblio/1142613

Salinger, A.G. (2008). Agile Components for the Rapid Development of Production Applications [Presentation]. https://www.osti.gov/biblio/1700616

Salinger, A.G. (2008). Embedded Nonlinear Analysis Tools Capability Area Overview [Presentation]. https://www.osti.gov/biblio/1700617

Lehoucq, R.B. (2008). ON STABILIZED FINITE ELEMENT METHODS FOR THE STOKES PROBLEM IN THE SMALL TIME STEP LIMIT [Presentation]. https://doi.org/10.1002/fld.1295

Bochev, P. (2008). Principles of compatible discretizations [Presentation]. https://www.osti.gov/biblio/1700619

Silling, S.A., Lehoucq, R.B., & Lehoucq, R.B. (2008). The Peridynamic Model and Nonlocality [Presentation]. https://www.osti.gov/biblio/1700620

Tuminaro, R.S., Shadid, J.N., & Shadid, J.N. (2008). Saddle-Point Preconditioners Based on Commutators [Conference]. https://www.osti.gov/biblio/1142508

Chevalier, C. (2008). What's new in Isorropia? Coloring & Ordering [Conference]. https://www.osti.gov/biblio/1142736

Lamppa, D.C., Garasi, C.J., Robinson, A.C., Kaye, R.J., & Kaye, R.J. (2008). Simulating coilgun projectile launch using ASC-funded codes [Conference]. https://www.osti.gov/biblio/952832

Hendrickson, B.A. (2008). Graphs and HPC: Lessons for Future Architectures [Conference]. https://www.osti.gov/biblio/1142324

Devine, K. (2008). TUG 2008 Meshes Geometry and Load Balancing Capability Area [Conference]. https://www.osti.gov/biblio/1142448

Budzien, J., Thompson, A.P., & Thompson, A.P. (2008). Shock-induced Reactions in Pentaerythritol Tetranitrate Studied by Molecular Dynamics Simulation [Conference]. https://www.osti.gov/biblio/1142515

Siefert, C. (2008). Trilinos: Scalable Computing from Meshes to Nonlinear Analysis [Conference]. https://www.osti.gov/biblio/1142592

Hoekstra, R.J., Hennigan, G., Pawlowski, R., Phipps, E.T., Shadid, J.N., Musson, L.C., Smith, T.M., Keiter, E., & Keiter, E. (2008). High Fidelity Simulation for Semiconductor Electrical Devices in Extreme Environments [Conference]. https://www.osti.gov/biblio/1142722

Moreland, K. (2008). Analysis of Fragmentation in Shock Physics Simulation [Presentation]. https://doi.org/10.1109/ULTRAVIS.2008.5154062

Bartlett, R. (2008). Maintaining the Stability of Trilinos Dev: Stable vs Experimental Code [Presentation]. https://www.osti.gov/biblio/1700630

Bartlett, R. (2008). CMake For Trilinos Developers [Presentation]. https://www.osti.gov/biblio/1700631

Bartlett, R. (2008). APP + Trilinos Integration: Status Opportunities and Challenges [Presentation]. https://www.osti.gov/biblio/1700632

Bartlett, R. (2008). Teuchos Utility Classes for Safer Memory Management in C++ [Presentation]. https://www.osti.gov/biblio/1700633

Bartlett, R. (2008). Trilinos Software Engineering Technologies and Integration [Presentation]. https://www.osti.gov/biblio/1700634

Bartlett, R. (2008). Open-Source Software for Interfacing and Support of Large-scale Embedded Nonlinear Optimization [Conference]. https://www.osti.gov/biblio/1142794

Bartlett, R. (2008). CMake Trilinos? [Presentation]. https://www.osti.gov/biblio/1700635

Taube, A.G. (2008). Re-thinking linearized coupled-cluster theory. Proposed for publication in the Journal of Chemical Physics., 130(14). https://www.osti.gov/biblio/967790

Warrender, C., Forsythe, J.C., Ravula, S.K., Keiter, E., Russo, T.V., Thornquist, H., & Thornquist, H. (2008). Neurlogical Modeling Constraints: UQ from experiments to simulations [Conference]. https://www.osti.gov/biblio/1142596

Rothganger, F. (2008). Cognitive Science [Presentation]. https://www.osti.gov/biblio/1700570

Davidson, G.S. (2008). Visual analytics is more than a pretty picture; don't forget databases models and minds [Presentation]. https://www.osti.gov/biblio/1700572

Gaudioso, J.M., Caskey, S.A., Smith, J., & Smith, J. (2008). Personnel security within a biosecurity program [Conference]. https://www.osti.gov/biblio/948659

Adams, B.M., Devine, K., Najm, H.N., Marzouk, Y.M., & Marzouk, Y.M. (2008). Distributed micro-releases of bioterror pathogens : threat characterizations and epidemiology from uncertain patient observables. https://doi.org/10.2172/945910

Moreland, K., Wilke, J., Attaway, S.W., Karelitz, D.B., & Karelitz, D.B. (2008). Post-processing V&V Level II ASC Milestone (2843) results. https://doi.org/10.2172/941404

May, E., Misra, M., & Misra, M. (2008). Systems chemical biology studies of enzymatic metabolic networks and inhibitors [Conference]. https://www.osti.gov/biblio/1142304

Hendrickson, B.A. (2008). Algorithmic Challenges for Multi-Million Cores [Conference]. https://www.osti.gov/biblio/1142411

Grest, G.S., Brown, W., Lechman, J.B., Petersen, M.K., Plimpton, S.J., Schunk, P.R., & Schunk, P.R. (2008). Nanoparticle flow, ordering and self-assembly. https://doi.org/10.2172/1028914

Moreland, K. (2008). Visualization Scripting Examples [Presentation]. https://www.osti.gov/biblio/1706302

Moreland, K., Karelitz, D.B., & Karelitz, D.B. (2008). ParaView Scripting Changes [Presentation]. https://www.osti.gov/biblio/1706303

Gay, D.M., Eldred, M., & Eldred, M. (2008). Specifying and Reading Program Input with NIDR [Conference]. https://www.osti.gov/biblio/1142620

Swiler, L.P., Paez, T.L., Mayes, R.L., & Mayes, R.L. (2008). Epistemic uncertainty quantification tutorial [Conference]. https://www.osti.gov/biblio/950891

Brightwell, R.B., Pedretti, K., & Pedretti, K. (2008). The influence of system balance on OS noise sensitivity [Conference]. https://www.osti.gov/biblio/950965

Gardiner, T.A., Rider, W., Robinson, A.C., & Robinson, A.C. (2008). Verification for ALEGRA using magnetized shock hydrodynamics problems [Conference]. https://www.osti.gov/biblio/952829

Dunlavy, D.M., Kolda, T.G., Kegelmeyer, W.P., & Kegelmeyer, W.P. (2008). Multilinear algebra for analyzing data with multiple linkages [Conference]. https://www.osti.gov/biblio/966593

Garasi, C.J., Kaye, R.J., Robinson, A.C., & Robinson, A.C. (2008). Simulating coilgun projectile launch using ASC codes [Conference]. https://www.osti.gov/biblio/952831

Kolda, T.G., Acar Ataman, E.N., Dunlavy, D.M., & Dunlavy, D.M. (2008). CPOPT : optimization for fitting CANDECOMP/PARAFAC models [Conference]. https://www.osti.gov/biblio/970228

Spain, M.D., Linebarger, J., Spencer, F.W., & Spencer, F.W. (2008). Design for Tractable Analysis (DTA) framework : [Conference]. https://www.osti.gov/biblio/1145169

Rohrer, B.R. (2008). BECCA: A Brain Emulating Cognition and Control Architecture [Conference]. https://www.osti.gov/biblio/1142422

Wills, A.E., Mattsson, T., & Mattsson, T. (2008). The AM05 density functional applied to the H2O molecule and dimer, and liquid water. Proposed for publication in the Journal of Chemical Theory and Computation.. https://www.osti.gov/biblio/966263

Gardiner, T.A., Rider, W., Robinson, A.C., & Robinson, A.C. (2008). Energy conservation in Lagrange-remap modeling for ideal-MHD shock propagation [Conference]. https://www.osti.gov/biblio/1028961

Wheeler, K.B., Murphy, R.C., Thain, D., & Thain, D. (2008). Qthreads: An API for programming with millions of lightweight threads [Conference]. IPDPS Miami 2008 - Proceedings of the 22nd IEEE International Parallel and Distributed Processing Symposium, Program and CD-ROM. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=51049104503&origin=inward

Pawlowski, R., Salinger, A.G., & Salinger, A.G. (2008). Multiphase reacting flow modeling of singlet oxygen generators for chemical oxygen iodine lasers [Conference]. https://www.osti.gov/biblio/947856

Moreland, K. (2008). Next Generation Visualization Technologies - Visualization Tools. SciDAC Review. https://www.osti.gov/biblio/1142461

Parks, M.L. (2008). Gas Chromatography with locally concentrated stationary layers. Journal of Fluid Mechanics. https://www.osti.gov/biblio/1143094

Dornburg, C.C., Hendrickson, S.M., Davidson, G.S., & Davidson, G.S. (2008). Improving Human Effectiveness for Extreme-Problem Solving: Assessing the Effectiveness of Electronic Brainstorming in an Industrial Setting. Human Factors. https://www.osti.gov/biblio/1142585

Overfelt, J.R., Montgomery, S., Ross, M., & Ross, M. (2008). A Quick Overview of Gemini/NES/NESM Status and Future Work [Presentation]. https://www.osti.gov/biblio/1706368

Shadid, J.N., Hoekstra, R.J., & Hoekstra, R.J. (2008). Block-Oriented Preconditioners for FEM Modeling of the Drift-Diffusion Equations for Semiconductors [Conference]. https://www.osti.gov/biblio/1142338

Dornburg, C.C., Adams, S.S., Hendrickson, S.M., Davidson, G.S., & Davidson, G.S. (2008). LDRD final report for improving human effectiveness for extreme-scale problem solving : assessing the effectiveness of electronic brainstorming in an industrial setting. https://doi.org/10.2172/942185

Pundit, N.D. (2008). 10 Years of Economic Growth [Presentation]. https://www.osti.gov/biblio/1706345

Boman, E.G. (2008). Next-generation data partitioning for parallel computing Next-generation data partitioning for parallel computing [Presentation]. https://www.osti.gov/biblio/1706348

Heroux, M.A. (2008). Scalable Algorithms for 1M Cores: What Might and Might Not Work and Why [Conference]. https://www.osti.gov/biblio/1272454

Rohrer, B.R. (2008). An Algorithm for Dynamic Reinforcement Learning Problems. Journal of Artificial Intelligence Research. https://www.osti.gov/biblio/1142557

Moreland, K. (2008). Large Scale Visualization with ParaView (slides) [Presentation]. https://www.osti.gov/biblio/1706277

Moreland, K. (2008). Large Scale Visualization with ParaView (SC08 handouts) [Presentation]. https://www.osti.gov/biblio/1706278

Backus, G.A., Strickland, J., & Strickland, J. (2008). Climate-derived tensions in Arctic security. https://doi.org/10.2172/941406

Bochev, P., Hu, J.J., Siefert, C., Shadid, J.N., Lin, P.T., & Lin, P.T. (2008). Multigrid & Optimal Solvers [Conference]. https://www.osti.gov/biblio/1141620

McNamara, L.A., Trucano, T.G., Backus, G.A., Mitchell, S.A., & Mitchell, S.A. (2008). R&D for computational cognitive and social models : foundations for model evaluation through verification and validation (final LDRD report). https://doi.org/10.2172/945901

Davidson, G.S. (2008). High-throughput proteomics : optical approaches. https://doi.org/10.2172/945920

Phipps, E.T., Eldred, M., Salinger, A.G., & Salinger, A.G. (2008). Capabilities for Uncertainty in Predictive Science (LDRD Final Report). https://doi.org/10.2172/1130397

Taylor, M.A. (2008). Asymmetric cubature formulas for polynomial integration in the triangle and square. Journal of Computational and Applied Mathematics, 218(1), pp. 184-191. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=44449178746&origin=inward

Speed, A. (2008). Computational modeling of analogy: Destined ever to only be metaphor?. Behavioral and Brain Sciences, 31(4), pp. 397-398. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=48349134927&origin=inward

Baker, C.G. (2008). Optimization on Manifolds: Problems and Solutions [Presentation]. https://www.osti.gov/biblio/1706544

Siefert, C. (2008). Introduction to Multigrid Methods [Presentation]. https://www.osti.gov/biblio/1706487

Devine, K., Berry, J., Plimpton, S.J., & Plimpton, S.J. (2008). The PageRank Derby [Conference]. https://www.osti.gov/biblio/1142880

Pedretti, K. (2008). Kitten Lightweight Kernel [Presentation]. https://www.osti.gov/biblio/1706423