Publications

Murphy, R.C. (2009). Building more powerful less expensive supercomputers using Processing-In-Memory (PIM) LDRD final report. https://doi.org/10.2172/993898

Hsu, A.Y., Speed, A., & Speed, A. (2009). Final Report on LDRD project 130784 : functional brain imaging by tunable multi-spectral Event-Related Optical Signal (EROS). https://doi.org/10.2172/993885

Barrett, B., Hendrickson, B.A., Laviolette, R.A., Leung, V.J., MacKey, G.E., Murphy, R.C., Phillips, C.A., Pinar, A., & Pinar, A. (2009). LDRD final report : massive multithreading applied to national infrastructure and informatics. https://doi.org/10.2172/993883

Pedretti, K.T.T., Levenhagen, M., Brightwell, R.B., & Brightwell, R.B. (2009). Palacios and Kitten : high performance operating systems for scalable virtualized and native supercomputing. https://doi.org/10.2172/1028948

Edwards, H.C., Freeze, G., Schultz, P.A., Arguello, J.G., Bartlett, R., Wang, Y., & Wang, Y. (2009). Waste Forms and Systems Integrated Performance and Safety Codes System Design Specification [Presentation]. https://www.osti.gov/biblio/1695616

Siefert, C. (2009). Statistical Theory of the List Experiment to Measure Socially Sensitive Attitudes [Conference]. https://www.osti.gov/biblio/1141834

Robbins, J., Voth, T.E., & Voth, T.E. (2009). An Implementation of the Generalized Finite Element Method for Large Scale Modeling and Simulation of Polycrystalline Ferroelectric Ceramics [Conference]. https://www.osti.gov/biblio/1142075

Phipps, E.T. (2009). A Comparison of Intrusive Stochastic Galerkin Methods for Uncertainty Quantification of Stochastic PDEs [Conference]. https://www.osti.gov/biblio/1142204

Shadid, J.N., Love, E., Rider, W., & Rider, W. (2009). A Nodal-based Variational Multiscale Method for Lagrangian Shock Hydrodynamics. Computer Methods in Applied Mechanics and Engineering. https://www.osti.gov/biblio/1142172

Ferreira, K.B., Riesen, R., Oldfield, R., Brightwell, R.B., Laros, J.H., Pedretti, K., & Pedretti, K. (2009). HPC application fault-tolerance using transparent redundant computation [Conference]. https://www.osti.gov/biblio/971418

Mitchell, S.A. (2009). CAT Workshop 2009 Poster [Presentation]. https://www.osti.gov/biblio/1695544

Wills, A.E. (2009). The subsystem functional scheme: The Armiento-Mattsson 2005 (AM05) functional and beyond [Conference]. https://www.osti.gov/biblio/1142160

Trucano, T.G., Backus, G.A., Hills, R.G., & Hills, R.G. (2009). Risks and Metrics in Influence Ops Modeling [Presentation]. https://www.osti.gov/biblio/1695557

Rodrigues, A. (2009). Structural simulation toolkit [Conference]. https://www.osti.gov/biblio/1088057

Dunlavy, D.M. (2009). Persistent homology for parameter sensitivity in large-scale text-analysis (informatics) graphs [Conference]. https://www.osti.gov/biblio/1141947

Snow, C., Wixom, R.R., Schultz, P.A., & Schultz, P.A. (2009). First principles site occupation and migration of helium in Beta-phase erbium hydride [Conference]. https://www.osti.gov/biblio/1141899

Moreland, K. (2009). Diverging Color Maps for Scientific Visualization (Expanded) [Conference]. https://www.osti.gov/biblio/1142214

Moreland, K. (2009). Diverging Color Maps for Scientific Visualization [Conference]. https://www.osti.gov/biblio/1141453

Acar Ataman, E.N., Kolda, T.G., Dunlavy, D.M., & Dunlavy, D.M. (2009). An Optimization Approach for Fitting Canonical Tensor Decompositions [Conference]. https://www.osti.gov/biblio/1142188

Speed, A. (2009). Understanding the neurophysiology of analogy-making through computational modeling [Conference]. https://www.osti.gov/biblio/1142239

Silling, S.A. (2009). Viscoplasticity using Peridynamics [Conference]. https://www.osti.gov/biblio/1142090

Wagner, G.J., Zhou, X., Plimpton, S.J., & Plimpton, S.J. (2009). Projective Integration for Simulating Multiple Timescale Diffusion Processes in Solids [Conference]. https://www.osti.gov/biblio/1141956

van Bloemen Waanders, B.G. (2009). Integrating error estimation, adaptivity, and optimization [Conference]. https://www.osti.gov/biblio/1055627

Brightwell, R.B. (2009). Catamount Lightweight Kernel [Presentation]. https://www.osti.gov/biblio/1695632

Reese, G.M., Walsh, T., Baker, C.G., Jones, A.N.A., & Jones, A.N.A. (2009). Numerical Approaches for the Quadratic Eigenvalue Problem on Large Structural Acoustic Systems [Conference]. https://www.osti.gov/biblio/1141337

Feddema, J.T. (2009). Algebraic connectivity and graph robustness. https://doi.org/10.2172/973665

Doerfler, D.W., Vaughan, C.T., & Vaughan, C.T. (2009). Recent Experiences on Performance and Scalability of SNL Applications on Red Storm and TLCC [Conference]. https://www.osti.gov/biblio/1142044

Moreland, K. (2009). Copy of IEEE Vis 2009 ParaView Tutorial Plugins [Presentation]. https://www.osti.gov/biblio/1695655

Moreland, K. (2009). IceT users' guide and reference. https://doi.org/10.2172/970256

Pawlowski, R. (2009). Globalized Newton-Krylov Solvers Applied to Large-scale Simulation of Navier-Stokes and Magneto-hydrodynamic Systems [Conference]. https://www.osti.gov/biblio/1141362

Hemmert, K.S., Rodrigues, A., & Rodrigues, A. (2009). Sandia Simulation and Networking [Presentation]. https://www.osti.gov/biblio/1695622

Carpenter, J.H. (2009). Summary of Modifications to Tabular EOS Material Driver [Presentation]. https://www.osti.gov/biblio/1696837

Mattsson, T., Wills, A.E., & Wills, A.E. (2009). Self-diffusion in Mo using the AM05 density functional [Conference]. https://www.osti.gov/biblio/1141335

Watson, J., Diegert, C., Rintoul, M.D., & Rintoul, M.D. (2009). Simulating Lifetime Diabetes Risk among Mexican-Americans Living along the US-Mexico: An Agent-Based Modeling Approach [Conference]. https://www.osti.gov/biblio/1142173

Levy, J.E., Ganti, A., Phillips, C.A., Hamlet, B.R., Carroll, M.S., Landahl, A.J., Gurrieri, T., Carr, R.D., & Carr, R.D. (2009). Brief Announcement: The Impact of Classical Electronics Constraints on a Solid-State Logical Qubit Memory [Conference]. https://www.osti.gov/biblio/1142769

Pawlowski, R. (2009). Trilinos Tutorial [Conference]. https://www.osti.gov/biblio/1141900

Wilson, A.T., Ulmer, C.D., Oldfield, R., & Oldfield, R. (2009). Access to external resources using service-node proxies [Conference]. https://www.osti.gov/biblio/1503455

Rudish, D.W., Cranford, S., Ward, H.L., Allan, B., & Allan, B. (2009). On Sacling I/O for Commodity Clusters [Conference]. https://www.osti.gov/biblio/1142120

Doerfler, D.W., Vaughan, C.T., & Vaughan, C.T. (2009). Red Storm / Cray XT4: A Superior Architecture for Scalability [Conference]. https://www.osti.gov/biblio/1141906

Hart, W.E., Watson, J., & Watson, J. (2009). Rethinking a Pythonic Modeling Architecture [Conference]. https://www.osti.gov/biblio/1141954

Gaudioso, J.M. (2009). Evolution of Biosecurity [Presentation]. https://www.osti.gov/biblio/1695687

Phipps, E.T., Salinger, A.G., Pawlowski, R., & Pawlowski, R. (2009). LOCA and Other Trilinos Tools for Analysis of Large-Scale Dynamical Systems [Conference]. https://www.osti.gov/biblio/1141912

Eldred, M. (2009). Recent Advances in Non-Intrusive Polynomial Chaos and Stochastic Collocation Methods for Uncertainty Analysis and Design [Conference]. https://www.osti.gov/biblio/1141730

Doser, A., Speed, A., Warrender, C., & Warrender, C. (2009). Using adversary text to detect adversary phase changes. https://doi.org/10.2172/983677

Brightwell, R.B., Kelly, S.M., & Kelly, S.M. (2009). Catamount N-Way Performance on XT5 [Conference]. https://www.osti.gov/biblio/1141686

Acar Ataman, E.N., Kolda, T.G., Dunlavy, D.M., & Dunlavy, D.M. (2009). The Canonical Tensor Decomposition and Its Applications to Data Analysis [Conference]. https://www.osti.gov/biblio/1141818

Doser, A., Speed, A., Warrender, C., & Warrender, C. (2009). Using adversary text to detect adversary phase changes. https://doi.org/10.2172/984942

Vaughan, C.T. (2009). Application Performance on a Mildly Heterogeneous Supercomputer [Conference]. https://www.osti.gov/biblio/1141441

Stewart, J. (2009). NEAMS: Overview of Verification [Presentation]. https://www.osti.gov/biblio/1696871

Tidwell, V.C., Kobos, P., Malczynski, L.A., Hart, W.E., & Hart, W.E. (2009). Decision Support for Integrated Water-Energy Planning [Conference]. https://www.osti.gov/biblio/1142190

Brightwell, R.B., Heroux, M.A., Wen, Z., & Wen, Z. (2009). Parallel phase model : a programming model for high-end parallel machines with manycores. https://doi.org/10.2172/984158

Siefert, C., Bochev, P., Peterson, K., & Peterson, K. (2009). An Algebraic Multigrid Method for Compatible Least-Squares Formulations of Div-Curl Equations [Conference]. https://www.osti.gov/biblio/1142414

Moreland, K. (2009). What's New in ParaView (DOECGF 2009) [Presentation]. https://www.osti.gov/biblio/1696878

Moreland, K. (2009). UltraVis Overview for DOECGF 2009 [Presentation]. https://www.osti.gov/biblio/1695673

Diegert, C. (2009). A semantic disambiguation algorithm to reason about cars from the shapes in over-segmentation of high-resolution orthophotos [Conference]. https://www.osti.gov/biblio/1141910

Diegert, C. (2009). A semantic disambiguation algorithm to reason about cars from the shapes in over-segmentation of high-resolution orthophotos [Conference]. https://www.osti.gov/biblio/1141949

Rouson, D., Salinger, A.G., & Salinger, A.G. (2009). A scalable and adaptable solution framework within components of the Community Climate System Model. Sprinter Lecture Notes. https://www.osti.gov/biblio/1142179

Taylor, S.E., Bernard, M., Vineyard, C.M., Verzi, S.J., Morrow, J.D., & Morrow, J.D. (2009). Memory in Silico: Building a Neuromimetic Episodic Cognitive Model [Conference]. https://www.osti.gov/biblio/1142499

Riesen, R., Ferreira, K.B., & Ferreira, K.B. (2009). An extensible operating system design for large-scale parallel machines. https://doi.org/10.2172/984155

Doerfler, D.W., Vaughan, C.T., & Vaughan, C.T. (2009). Red Storm/XT4: A Superior Architecture for Scalability [Conference]. https://www.osti.gov/biblio/1141922

Love, E., Scovazzi, G., Rider, W., & Rider, W. (2009). Algorithmic properties of the midpoint predictor-corrector time integrator. https://doi.org/10.2172/983698

Acar Ataman, E.N., Kolda, T.G., Dunlavy, D.M., & Dunlavy, D.M. (2009). Link Prediction on Evolving Data using Tensor Factorizations [Conference]. https://www.osti.gov/biblio/1142541

Carnes, B., Bartlett, R., & Bartlett, R. (2009). Adjoint based optimization and adaptivity for flow and transport problems [Conference]. https://www.osti.gov/biblio/950924

Leung, V.J. (2009). Timed-Run Scheduling [Conference]. https://www.osti.gov/biblio/1141757

Rodrigues, A. (2009). Simulation & Modeling [Conference]. https://www.osti.gov/biblio/1141534

Murphy, R.C. (2009). Can we continue to build supercomputers out of processors optimized for laptops? [Conference]. https://www.osti.gov/biblio/950674

Tuminaro, R.S., Hu, J.J., Cyr, E.C., & Cyr, E.C. (2009). Energy Minimizing Algebraic Multigrid for Systems of Partial Differential Equations [Presentation]. https://www.osti.gov/biblio/1696844

Ober, C.C. (2009). Verification of complex codes [Conference]. https://www.osti.gov/biblio/1028902

Diegert, C. (2009). Notes on a gap in advancing geospatial image processing methods for NA-22 [Presentation]. https://www.osti.gov/biblio/1696848

Rohrer, B.R. (2009). Model-free Learning and Control in a Mobile Robot [Conference]. https://www.osti.gov/biblio/1141587

Potter, K. (2009). A Flexible Approach for the Statistical Visualization of Ensemble Data [Conference]. https://www.osti.gov/biblio/1141429

Dunlavy, D.M. (2009). LSAView: A Tool for Visual Exploration of Latent Semantic Modeling [Conference]. https://www.osti.gov/biblio/1142486

Keiter, E., Mei, T., Russo, T.V., Pawlowski, R., Schiek, R.L., Santarelli, K.R., Coffey, T.S., Thornquist, H., & Thornquist, H. (2009). Xyce Parallel Electronic Simulator : reference guide, version 4.1. https://doi.org/10.2172/972490

Keiter, E., Mei, T., Russo, T.V., Pawlowski, R., Schiek, R.L., Santarelli, K.R., Coffey, T.S., Thornquist, H., & Thornquist, H. (2009). Xyce Parallel Electronic Simulator : users' guide, version 4.1. https://doi.org/10.2172/972491

Rodrigues, A., Adalsteinsson, H., Cranford, S., & Cranford, S. (2009). CSSE Simulation Tools Quarterly Update FY2009 Q2 [Presentation]. https://www.osti.gov/biblio/1698317

Abbott, R.G., Basilico, J.D., Glickman, M.R., Hart, D., Whetzel, J.H., & Whetzel, J.H. (2009). Enabling immersive simulation. https://doi.org/10.2172/978913

Glickman, M.R. (2009). EEG analyses with SOBI. https://doi.org/10.2172/978914

Acar Ataman, E.N., Dunlavy, D.M., & Dunlavy, D.M. (2009). An optimization approach for fitting canonical tensor decompositions. https://doi.org/10.2172/978916

Gaudioso, J.M. (2009). The Dual-Use Dilemma [Presentation]. https://www.osti.gov/biblio/1698327

Gaudioso, J.M. (2009). Biosecurity Policy Drivers [Presentation]. https://www.osti.gov/biblio/1698328

Linebarger, J.M., Spain, M.D., McDonald, M.J., Spencer, F.W., Cloutier, R.J., & Cloutier, R.J. (2009). The Design for Tractable Analysis (DTA) Framework: A Methodology for the Analysis and Simulation of Complex Systems. International Journal of Decision Support System Technology (IJDSST), 1(2), pp. 69-91. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85001727403&origin=inward

Barone, M., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2009). Low-dimensional modeling for spatial developing free shear layers [Conference]. https://www.osti.gov/biblio/957643

Rountree, S. (2009). Networks Grand Challenge LDRD External Advisory Board Meeting [Presentation]. https://www.osti.gov/biblio/1698382

Lehoucq, R.B. (2009). SPECIAL FINITE ELEMENT METHODS BASED ON COMPONENT MODE SYNTHESIS TECHNIQUES. ESAIM: Mathematical Modelling and Numerical Analysis. https://www.osti.gov/biblio/1142680

Niederhaus, J.H.J., Alexander, C.S., Haill, T.A., Vogler, T.J., & Vogler, T.J. (2009). Magnetic-pulse-driven Rayleigh-Taylor instability in plastically deforming metals [Conference]. https://www.osti.gov/biblio/1142795

Silling, S.A., Lehoucq, R.B., & Lehoucq, R.B. (2009). Peridynamic modeling of the dynamic response of heterogeneous media [Conference]. https://www.osti.gov/biblio/958202

Tuminaro, R.S., Hu, J.J., Siefert, C., & Siefert, C. (2009). Multilevel Project [Presentation]. https://www.osti.gov/biblio/1698386

Keiter, E., Thornquist, H., Day, D.M., Boman, E.G., Hoekstra, R.J., & Hoekstra, R.J. (2009). A New Parallel Strategy for Transistor-Level Circuit Simulation [Conference]. https://www.osti.gov/biblio/1142417

Mitchiner, J.L., Strickland, J., Heermann, P.D., Sanzero, G.V., & Sanzero, G.V. (2009). Climate Changes in the Arctic and The Challenge to USCG Operations [Presentation]. https://www.osti.gov/biblio/1698387

Shadid, J.N. (2009). Performance of an MPI-only semiconductor device simulator on a quad socket/quad core InfiniBand platform. https://doi.org/10.2172/948289

Riesen, R., Ferreira, K.B., & Ferreira, K.B. (2009). An Extensible Operating System Design for Large-Scale Parallel Machines [Conference]. https://www.osti.gov/biblio/1141294

Ward, H.L. (2009). I/O trace data from homme_cam_3_2_59 code runs [Presentation]. https://www.osti.gov/biblio/1698302

Bernard, M., Backus, G.A., Glickman, M.R., & Glickman, M.R. (2009). Modeling Populations of Interest in Order to Simulate Cultural Response to Influence Activities [Conference]. https://www.osti.gov/biblio/1142526

Wills, A.E., Janssen, C., & Janssen, C. (2009). Calculation of chemical reaction energies using the AM05 density functional. Journal of Computational Chemistry. https://www.osti.gov/biblio/1142421

Adams, B.M., Swiler, L.P., Eldred, M., Gay, D.M., & Gay, D.M. (2009). DAKOTA Training 2008: Optimization and Calibration [Presentation]. https://www.osti.gov/biblio/1696903

Carr, R.D. (2009). Improving The Semidefinite Programming Bound To Max Cut. Operations Research Letters. https://www.osti.gov/biblio/1142328

Stewart, J. (2009). Verification Validation Uncertainty Quantification Predictive Modeling and Simulation: Integration of NW Capabilities into NEAMS [Presentation]. https://www.osti.gov/biblio/1698321

Romero, L., Parks, M.L., & Parks, M.L. (2009). On the two-domain equations for gas chromatography. https://doi.org/10.2172/978912

Devine, K., Diachin, L., Kraftcheck, J., Jansen, K.E., Leung, V.J., Luo, X., Miller, M., Ollivier-Gooch, C., Ovcharenko, A., Sahni, O., Shephard, M.S., Tautges, T., Xie, T., Zhou, M., & Zhou, M. (2009). Interoperable mesh components for large-scale, distributed-memory simulations [Conference]. Journal of Physics: Conference Series. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=77957057057&origin=inward

Murphy, R.C. (2009). DOE's Institute for Advanced Architecture and Algorithms: An application-driven approach [Conference]. Journal of Physics: Conference Series. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=77957024070&origin=inward