Publications

Moreland, K. (2008). Snowbird Workshop 2008 ParaView Introduction [Presentation]. https://www.osti.gov/biblio/1706508

Moreland, K. (2008). Advanced ParaView Visualization - Introduction [Presentation]. https://www.osti.gov/biblio/1706402

Moreland, K. (2008). Advanced ParaView Visualization - Conclusion [Presentation]. https://www.osti.gov/biblio/1706403

Carr, R.D. (2008). Better relaxations of classical discrete optimization problems [Conference]. https://www.osti.gov/biblio/947360

Muller, R.P., Carroll, M.S., Young, R.W., Sears, M.P., Lilly, M.P., Eng, K., Tracy, L.A., & Tracy, L.A. (2008). Modeling physical qubits using tightbinding and effective mass theories [Conference]. https://www.osti.gov/biblio/946959

Hart, W.E. (2008). A review of sensor placement strategies for contamination warning systems. Proposed for publication in the Journal of Water Resources Planning and Management.. https://www.osti.gov/biblio/946984

Heroux, M.A., Edwards, H.C., Williams, A.B., Collis, S.S., & Collis, S.S. (2008). HPC application performance analysis and prediction [Conference]. https://www.osti.gov/biblio/947859

Pawlowski, R., Salinger, A.G., & Salinger, A.G. (2008). Multiphase reacting flow modeling of singlet oxygen generators for chemical oxygen iodine lasers [Conference]. https://www.osti.gov/biblio/947855

Phipps, E.T. (2008). Software needs, challenges and opportunities in polynomial chaos modeling for large-scale applications [Conference]. https://www.osti.gov/biblio/947839

Boman, E.G. (2008). A nested dissection approach to sparse matrix partitioning for parallel computations. Proposed for publication in SIAM Journal on Scientific Computing.. https://www.osti.gov/biblio/947836

Wills, A.E. (2008). Fundaments of the RSPt code [Conference]. https://www.osti.gov/biblio/948333

Devine, K., Boman, E.G., Chevalier, C., Leung, V.J., Riesen, L., & Riesen, L. (2008). Tutorial : the Zoltan toolkit [Conference]. https://www.osti.gov/biblio/948337

Thompson, A.P. (2008). Molecular dynamics simulation of dynamic materials response [Conference]. https://www.osti.gov/biblio/948309

Scovazzi, G. (2008). Stabilized methods for compressible flows. Proposed for publication in the Journal of Scientific Computing.. https://www.osti.gov/biblio/966254

Hennigan, G., Castro, J.P., Lin, P.T., & Lin, P.T. (2008). Charon parallel semiconductor device simulator. https://doi.org/10.2172/1051718

In 't Veld, P.J., Stevens, M.J., & Stevens, M.J. (2008). Simulation of the mechanical strength of a single collagen molecule. Biophysical Journal, 95(1), pp. 33-39. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=46749084254&origin=inward

Banks, J.W., Aslam, T., Rider, W., & Rider, W. (2008). On sub-linear convergence for linearly degenerate waves in capturing schemes. Journal of Computational Physics, 227(14), pp. 6985-7002. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=44649116373&origin=inward

Gaudioso, J.M. (2008). BSL3 Planning Phase - Basis of Design [Conference]. https://www.osti.gov/biblio/1143265

Gaudioso, J.M. (2008). BSL3 Operations Phase - Laboratory Operations and Maintenance [Conference]. https://www.osti.gov/biblio/1142817

Gaudioso, J.M. (2008). BSL3 Design Phase - Laboratory Design [Conference]. https://www.osti.gov/biblio/1142837

Gaudioso, J.M. (2008). BSL3 construction phase : [Conference]. https://www.osti.gov/biblio/1268311

Gaudioso, J.M. (2008). BSL3 Acceptance Phase - Laboratory Acceptance [Conference]. https://www.osti.gov/biblio/1143202

Ridzal, D., Bochev, P., & Bochev, P. (2008). Scalable Solution Methods via Optimal Control Reformulations [Conference]. https://www.osti.gov/biblio/1143044

Webster, C. (2008). Analysis and Applications of an Anisotropic Sparse Grid Stochastic Collocation Technique for PDEs with Random Input Data [Presentation]. https://www.osti.gov/biblio/1707763

Schultz, P.A. (2008). Response to Comment on 'Theory of Defect Levels and the %22Band Gap Problem%22 in SIlicon'. Physical Review Letters. https://www.osti.gov/biblio/1142844

Dunlavy, D.M. (2008). Coupling Informatics Algorithm Development and Visual Analysis [Conference]. https://www.osti.gov/biblio/1143196

Salerno, R.M., Gaudioso, J.M., & Gaudioso, J.M. (2008). BSL3 Issues for Consideration Prior to Building a New Laboratory [Presentation]. https://www.osti.gov/biblio/1706529

Edwards, H.C., Crawford, D.A., Bishop, J.E., & Bishop, J.E. (2008). Two-way coupling of Presto v2.8 and CTH v8.1. https://doi.org/10.2172/1044974

Doerfler, D.W., Hemmert, K.S., Barrett, B., Kelly, S.M., & Kelly, S.M. (2008). HPC Architecture Research Presentations for Kansas State University [Presentation]. https://www.osti.gov/biblio/1706526

Siirola, J.D., Hart, W.E., Overfelt, J.R., Smith, J.D., & Smith, J.D. (2008). Proposal to the GNEP Advanced Fuel Cycle FOA - Simulation Optimization & Uncertainty Quantification of the Advanced Fuel Cycle [Presentation]. https://www.osti.gov/biblio/1710265

Pedretti, K., Kelly, S.M., Vandyke, J.P., Vaughan, C.T., & Vaughan, C.T. (2008). Investigating Real Power Usage on High Performance Computing Platforms [Conference]. https://www.osti.gov/biblio/1142865

Wolf, M. (2008). Hypergraph-Based Combinatorial Optimization of Matrix-Vector Multiplication [Conference]. https://www.osti.gov/biblio/1142961

Boman, E.G. (2008). Distributed-memory parallel algorithms for distance-2 coloring and their application to derivative computation. SIAM Journal on Scientific Computing. https://www.osti.gov/biblio/1143287

Heroux, M.A. (2008). Design Issues for Numerical Libraries on Scalable Multicore Architectures [Conference]. https://www.osti.gov/biblio/1142827

Hart, W.E., Phillips, C.A., Berry, J., Boman, E.G., Riesen, L., Watson, J., & Watson, J. (2008). U. S. Environmental Protection Agency uses Operations Research to Reduce Drinking Water Contamination Risks. INFORMS Interfaces Journal. https://www.osti.gov/biblio/1142978

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2008). Peridynamics for multiscale modeling of defects in solids [Conference]. https://www.osti.gov/biblio/966590

Moreland, K. (2008). Unstructured Data Partitioning for Large Scale Visualization [Presentation]. https://www.osti.gov/biblio/1707789

Voth, T.E. (2008). The Patterned Interface Reconstruction (PIR) Method [Conference]. https://www.osti.gov/biblio/1142923

Taylor, M.A. (2008). CEA/SNL Benchmarking [Presentation]. https://www.osti.gov/biblio/1709017

Drake, R.R., Robinson, A.C., & Robinson, A.C. (2008). MPI applications : how we use MPI in ALEGRA [Conference]. https://www.osti.gov/biblio/949860

Wen, Z. (2008). Tutorial: Parallel Programming in BEC [Presentation]. https://www.osti.gov/biblio/1707801

Debenedictis, E. (2008). Generic Petascale Machines: Three Scenarios [Conference]. https://www.osti.gov/biblio/1143292

Rider, W., Love, E., Voth, T.E., Mosso, S.J., Niederhaus, J.H.J., Strack, O.E., Robinson, A.C., & Robinson, A.C. (2008). Multimaterial ALE Algorithms in ALEGRA [Conference]. https://www.osti.gov/biblio/1143176

Moreland, K. (2008). Remote rendering for ultrascale data [Conference]. https://www.osti.gov/biblio/1143015

Siefert, C., Hu, J.J., Tuminaro, R.S., Boman, E.G., Devine, K., & Devine, K. (2008). Partitioning for Multigrid Solvers [Conference]. https://www.osti.gov/biblio/1143232

Wylie, B.N. (2008). Titan Slideset [Presentation]. https://www.osti.gov/biblio/1707821

Bartlett, R. (2008). Automatic Differentiation of Large-Scale C++ Applications with Sacado [Conference]. https://www.osti.gov/biblio/1143209

Phipps, E.T. (2008). A Recent Perspective on Predictive Computational Science: Educational Needs and Opportunities [Conference]. https://www.osti.gov/biblio/1143024

James, C.D., Rohde, S., Wroblewski, B., Patel, K., Okandan, M., Rohrer, B.R., Ho, C.K., Knudson, R., Garcia, E.J., & Garcia, E.J. (2008). Copy of Copy of LTCC IN MICROELECTRONICS MICROSYSTEMS AND SENSORS [Conference]. https://www.osti.gov/biblio/1141768

Budzien, J., Lo, C.S., Thompson, A.P., & Thompson, A.P. (2008). A New Constitutive Model for the Chemical Aging of Polymer Networks in Deformed States. Macromolecules, 41(24). https://doi.org/10.1021/ma801373z

Scovazzi, G. (2008). Stabilized Methods for Compressible Flows. Journal of Scientific Computing. https://www.osti.gov/biblio/1143190

Silling, S.A., Lehoucq, R.B., & Lehoucq, R.B. (2008). Peridynamic Simulation of Electromigration. Computer Modeling in Engineering and Sciences. https://www.osti.gov/biblio/1143183

McKenna, S.A., Vugrin, E., Hart, W.E., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2008). Automated Contaminant Source Location [Conference]. https://www.osti.gov/biblio/1142946

McKenna, S.A., Hart, D., Vugrin, E., Hart, W.E., & Hart, W.E. (2008). Water Quality Event Detection [Conference]. https://www.osti.gov/biblio/1143248

Dornburg, C.C., Hendrickson, S.M., Forsythe, J.C., Bauer, T.L., Davidson, G.S., & Davidson, G.S. (2008). The effectiveness of electronic brainstorming in an industrial setting [Conference]. https://www.osti.gov/biblio/1146136

Heroux, M.A. (2008). Design Issues for Numerical Libraries on Scalable Multicore [Conference]. https://www.osti.gov/biblio/1142932

Wills, A.E. (2008). The importance of electrons for understanding microscopic processes: What experiments can do for theory and vice versa [Conference]. https://www.osti.gov/biblio/1143006

Spotz, W.F., Lorber, A., Hooper, R., Schmidt, R., & Schmidt, R. (2008). A Multi-Physics Coupling Approach for Integrated Nuclear Reactor Safety Calculations [Conference]. https://www.osti.gov/biblio/1143238

Devine, K., Chevalier, C., & Chevalier, C. (2008). Tutorial: The Zoltan Toolkit [Conference]. https://www.osti.gov/biblio/1142810

Debenedictis, E., Ma, K., & Ma, K. (2008). What's Beyond Moore's Law? [Presentation]. https://www.osti.gov/biblio/1706574

Boman, E.G. (2008). Combinatorial models and algorithms for parallel sparse matrix computations [Conference]. https://www.osti.gov/biblio/1143005

Ridzal, D. (2008). Rehabilitation of quadrilateral Raviart-Thomas elements [Conference]. https://www.osti.gov/biblio/1142913

Niederhaus, J.H.J., Alexander, C.S., Haill, T.A., Vogler, T.J., & Vogler, T.J. (2008). Magnetic-pulse-driven Rayleigh-Taylor instability in plastically deforming metals [Conference]. https://www.osti.gov/biblio/1142985

Sears, M.P., Vaughan, C.T., & Vaughan, C.T. (2008). Optimizing FFT for HPCC [Conference]. https://www.osti.gov/biblio/1145664

Vaughan, C.T., Vandyke, J.P., Kelly, S.M., & Kelly, S.M. (2008). Application Performance under Different XT Operating Systems [Conference]. https://www.osti.gov/biblio/1145825

Vaughan, C.T., Vandyke, J.P., Kelly, S.M., & Kelly, S.M. (2008). Application Performance under Different XT Operating Systems [Conference]. https://www.osti.gov/biblio/1145771

Moreland, K., Rogers, D., & Rogers, D. (2008). Large scale visualization on the Cray XT3 using ParaView [Conference]. https://www.osti.gov/biblio/949016

Moreland, K., Rogers, D., & Rogers, D. (2008). Large Scale Visualization on the Cray XT3 Using ParaView -- Slides [Conference]. https://www.osti.gov/biblio/1145876

Parks, M.L., Plimpton, S.J., Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2008). Mesoscale Simulations with Microscale Tools: Peridynamics in a Molecular Dynamics Code [Presentation]. https://www.osti.gov/biblio/1709095

Brown, W. (2008). DrL: Distributed Recursive (Graph) Layout. Journal of Graph Algorithms and Applications. https://www.osti.gov/biblio/1145621

Silling, S.A. (2008). Peridynamic States [Conference]. https://www.osti.gov/biblio/1145789

Hendrickson, B.A. (2008). Networks Grand Challenge Project Holds Inaugural External Advisory Board Meeting [Presentation]. https://www.osti.gov/biblio/1710248

Boman, E.G., Hendrickson, B.A., & Hendrickson, B.A. (2008). Optimizing parallel sparse matrix-vector multiplication by partitioning [Conference]. https://www.osti.gov/biblio/949000

Ferreira, K.B., Pedretti, K., Brightwell, R.B., & Brightwell, R.B. (2008). Exploring Memory Management Strategies in Catamount [Conference]. https://www.osti.gov/biblio/1272175

Siirola, J.D., Hart, W.E., & Hart, W.E. (2008). The Acro/COLIN Framework: Developing Flexible Optimization Interfaces for Parallel Hybrid and Dynamically-Configured Algorithms [Conference]. https://www.osti.gov/biblio/1268296

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2008). Atomistic to continuum (AtC) coupling using peridynamics [Conference]. https://www.osti.gov/biblio/1321820

Carr, R.D., Ganti, A., & Ganti, A. (2008). A New Scheduling Problem Motivated by Quantum Computation [Conference]. https://www.osti.gov/biblio/1272311

Pedretti, K.T.T., Kelly, S.M., Levenhagen, M., & Levenhagen, M. (2008). Summary of multi-core hardware and programming model investigations. https://doi.org/10.2172/1028920

Boman, E.G., Phillips, C.A., Riesen, L., & Riesen, L. (2008). Low-Memory Lagrangian Relaxation Methods for Sensor Placement in Municipal Water Networks [Presentation]. https://doi.org/10.1061/40976(316)511

Knupp, P., Ober, C.C., & Ober, C.C. (2008). A Code Verification Checklist [Presentation]. https://www.osti.gov/biblio/1709044

Gaudioso, J.M. (2008). Prioritizing the Global Biological Threat [Presentation]. https://www.osti.gov/biblio/1709026

Pedretti, K.T.T., Barrett, B., Hemmert, K.S., Vaughan, C.T., & Vaughan, C.T. (2008). Application Sensitivity to Link and Injection Bandwidth on a Cray XT4 System [Conference]. https://www.osti.gov/biblio/1143409

Sears, M.P., Vaughan, C.T., & Vaughan, C.T. (2008). Optimizing FFT for HPCC [Conference]. https://www.osti.gov/biblio/1143410

Santarelli, K.R. (2008). Comparison of a Switching Controller to Two LTI Controllers for a Class of LTI Plants [Conference]. https://www.osti.gov/biblio/1143365

Wills, A.E. (2008). Spin version of AM05. Physical Review B. https://www.osti.gov/biblio/1143388

Ferreira, K.B., Pedretti, K., Levenhagen, M., Brightwell, R.B., & Brightwell, R.B. (2008). Exploring Memory Management Strategies in Catamount [Conference]. https://www.osti.gov/biblio/1143277

Dornburg, C.C., Hendrickson, S.M., Davidson, G.S., & Davidson, G.S. (2008). Individual and group electronic brainstorming in an industrial setting [Conference]. https://www.osti.gov/biblio/949854

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2008). Force flux and the peridynamic stress tensor. Journal of the Mechanics and Physics of Solids, 56(4), pp. 1566-1577. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=40849086724&origin=inward

Hensinger, D.M., Drake, R.R., Foucar, J.G., & Foucar, J.G. (2008). Pamgen, a library for parallel generation of simple finite element meshes. https://doi.org/10.2172/932881

Doerfler, D.W., Vaughan, C.T., & Vaughan, C.T. (2008). A preliminary evaluation of quad-core processors for Sandia applications [Conference]. https://www.osti.gov/biblio/949825

Heroux, M.A. (2008). Initial Experiences with the BEC Parallel Programming Environment [Conference]. https://www.osti.gov/biblio/1145857

Phipps, E.T. (2008). Analytic Sensitivity and Uncertainty Computations in Large-Scale Applications via Automatic Differentiation [Presentation]. https://www.osti.gov/biblio/1712642

Eldred, M., Webster, C., & Webster, C. (2008). Evaluation of Non-Intrusive Approaches for Wiener-Askey Generalized Polynomial Chaos [Conference]. https://www.osti.gov/biblio/1145845

Knupp, P. (2008). A Target-matrix Paradigm for Mesh Opitmization - Local Metrics [Presentation]. https://www.osti.gov/biblio/1712659

Pawlowski, R., Shadid, J.N., Phipps, E.T., & Phipps, E.T. (2008). Fully-Implicit / Direct-to-steady-state Solution of FE Formulations for Resistive Magneto-Hydrodynamic Systems [Conference]. https://www.osti.gov/biblio/1145694

Siefert, C., Tuminaro, R.S., Bochev, P., Boman, E.G., Devine, K., & Devine, K. (2008). Recent Algorithmic (and Practical) Developments in ML [Conference]. https://www.osti.gov/biblio/1145786

Thornquist, H., Heroux, M.A., Parks, M.L., Lehoucq, R.B., & Lehoucq, R.B. (2008). Belos: A Framework for Next-generation Iterative Linear Solvers [Presentation]. https://www.osti.gov/biblio/1712856

Tuminaro, R.S. (2008). Preconditioners Boundary Conditions for the Navier-Stokes Equations Based on Commutators [Conference]. https://www.osti.gov/biblio/1146185

Crossno, P.J., Dunlavy, D.M., & Dunlavy, D.M. (2008). Using Visualization for Relevancy Feedback Tuning of Text Analysis Algorithms [Presentation]. https://www.osti.gov/biblio/1712862

Rodrigues, A. (2008). System simulation structural simulation toolkit [Conference]. https://www.osti.gov/biblio/1088063