Publications

McKenna, S.A., Ray, J., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2010). Posterior predictive modeling using multi-scale stochastic inverse parameter estimates [Conference]. https://www.osti.gov/biblio/1038166

Shadid, J.N., Pawlowski, R., Cyr, E.C., & Cyr, E.C. (2010). Reactor core sub-assembly simulations using a stabilized finite element method [Conference]. https://www.osti.gov/biblio/1114618

Thornquist, H., Mei, T., Tuminaro, R.S., & Tuminaro, R.S. (2010). Solution methods for very highly integrated circuits. https://doi.org/10.2172/1011611

Rodrigues, A. (2010). Memory and power issues for exascale [Conference]. https://www.osti.gov/biblio/1039021

Parks, M.L. (2010). Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1684853

Vaughan, C.T., Rajan, M., Barrett, R.F., Doerfler, D.W., Pedretti, K., & Pedretti, K. (2010). Investigating the impact of the cielo cray XE6 architecture on scientific application codes [Conference]. https://www.osti.gov/biblio/1039014

Hemmert, K.S., Barrett, B., Underwood, K.D., & Underwood, K.D. (2010). Using triggered operations to offload collective communication operations [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=78149245032&origin=inward

Taube, A.G. (2010). Alternative perturbation theories for triple excitations in coupled-cluster theory. Molecular Physics, 108(21-23), pp. 2951-2960. https://doi.org/10.1080/00268976.2010.505210

Bochev, P., Ridzal, D., & Ridzal, D. (2010). Solving PDEs with intrepid [Conference]. https://www.osti.gov/biblio/1030374

Rajamanickam, S., Boman, E.G., Heroux, M.A., Day, D.M., & Day, D.M. (2010). Recent developments in sparse direct methods in trilinos [Conference]. https://www.osti.gov/biblio/1030368

Bartlett, R. (2010). Trilinos software engineering technologies and integration capability area overview [Conference]. https://www.osti.gov/biblio/1030299

Oldfield, R., Sjaardema, G.D., & Sjaardema, G.D. (2010). Trilinos I/O Support: Capability Update [Presentation]. https://www.osti.gov/biblio/1675070

Oldfield, R., Sjaardema, G.D., & Sjaardema, G.D. (2010). Trilinos I/O Support: Proposed I/O Software for FY11 [Presentation]. https://www.osti.gov/biblio/1684858

Creighton, J., Baucom, K.C., Coltrin, M.E., Figiel, J.J., Cross, K.C., Koleske, D., Pawlowski, R., Heller, E.J., Bogart, K.H.A., Coker, E.N., & Coker, E.N. (2010). A revolution in micropower : the catalytic nanodiode. https://doi.org/10.2172/1000287

Phipps, E.T. (2010). What is Piro [Conference]. https://www.osti.gov/biblio/1030277

Phipps, E.T., Ostien, J.T., & Ostien, J.T. (2010). Albany : a trilinos-based PDE application [Conference]. https://www.osti.gov/biblio/1030266

Wilson, A.T., Foehse, M., Shepherd, J.F., & Shepherd, J.F. (2010). PubMed: Best-Connected Groups of Authors [Presentation]. https://www.osti.gov/biblio/1675072

Willenbring, J.M. (2010). Trilinos Framework Update [Presentation]. https://www.osti.gov/biblio/1675068

Bartlett, R. (2010). The State of Trilinos Software Engineering [Conference]. https://www.osti.gov/biblio/1121611

Robbins, J., Voth, T.E., & Voth, T.E. (2010). Modeling dislocations in a polycrystal using the generalized finite element method. International Journal of Theoretical and Applied Multiscale Mechanics. https://www.osti.gov/biblio/1121939

Curry, M.L. (2010). A GPU-Based Storage System [Presentation]. https://www.osti.gov/biblio/1673926

Jayaraman, S. (2010). Evolutionary optimization of interatomic potentials using genetic programming [Conference]. https://www.osti.gov/biblio/1030276

Jayaraman, S. (2010). Solid-liquid phase coexistence of mixtures from molecular dynamics simulations : free energy calculations in liquid mixtures of alkali nitrates using molecular dynamics [Conference]. https://www.osti.gov/biblio/1030414

Hart, W.E. (2010). Recent updates to pyomo : python optimization modeling objects [Conference]. https://www.osti.gov/biblio/1030404

Hart, W.E. (2010). Installing python software packages : the good, the bad and the ugly [Conference]. https://www.osti.gov/biblio/1030380

Turner, D.Z. (2010). On Raviart-Thomas and VMS formulations for flow in heterogeneous materials [Conference]. https://www.osti.gov/biblio/1030379

Diegert, C. (2010). Resolving local ambiguity using semantics of shape [Conference]. https://www.osti.gov/biblio/1031321

Oldfield, R. (2010). Managing variability in the IO performance of petascale storage systems [Conference]. https://www.osti.gov/biblio/1031319

Silling, S.A. (2010). Coarse-graining in peridynamics [Conference]. https://www.osti.gov/biblio/1031307

Schultz, P.A. (2010). Radiation defect chemistry in GaAs and III-V's [Presentation]. https://www.osti.gov/biblio/1673933

Alvin, K.F. (2010). Quantification of margins and uncertainties : perspectives on simulation-based QMU at Sandia [Conference]. https://www.osti.gov/biblio/1031305

Laros, J.H. (2010). Affecting application energy use on high performance computers [Conference]. https://www.osti.gov/biblio/1031891

Wolf, M. (2010). Load balancing with Zoltan and Isorropia [Conference]. https://www.osti.gov/biblio/1031886

Moreland, K. (2010). Rethinking Visualization Frameworks for Extreme-Scale Computing - Presentation [Presentation]. https://www.osti.gov/biblio/1673935

Moreland, K. (2010). Visualization Communication as Very Short Storytelling [Presentation]. https://www.osti.gov/biblio/1673936

Kraynik, A.M., Romero, L., Torczynski, J.R., & Torczynski, J.R. (2010). Simulations of Bubble Motion in an Oscillating Liquid [Presentation]. https://www.osti.gov/biblio/1692344

Pedretti, K. (2010). A Scalable Virtualization Environment for HPC [Presentation]. https://www.osti.gov/biblio/1673909

Lofstead, G.F. (2010). ADIOS : it's more than just an IO library [Conference]. https://www.osti.gov/biblio/1035318

Lin, P.T. (2010). High fidelity semiconductor device simulations for the ASC QASPR program [Conference]. https://www.osti.gov/biblio/1032922

Parekh, O. (2010). Iterative packing for demand matching and sparse packing [Conference]. https://www.osti.gov/biblio/1032921

Murphy, R.C. (2010). Lab News 2011: X-caliber [Presentation]. https://www.osti.gov/biblio/1673920

Bova, S.W. (2010). On the preservation of total enthalpy in SUPG methods [Conference]. https://www.osti.gov/biblio/1032949

Siirola, J.D., Watson, J., Hart, W.E., & Hart, W.E. (2010). Pyomo : Python Optimization Modeling Objects [Conference]. https://www.osti.gov/biblio/1035667

Pedretti, K., Bridges, P.G., & Bridges, P.G. (2010). Opportunities for leveraging OS virtualization in high-end supercomputing [Conference]. https://www.osti.gov/biblio/1035313

Harger, J., Crossno, P.J., & Crossno, P.J. (2010). Comparison of open source visual analytics toolkits [Conference]. https://www.osti.gov/biblio/1035327

Adams, B.M., Dalbey, K., Swiler, L.P., & Swiler, L.P. (2010). Surrogate modeling with surfpack [Conference]. https://www.osti.gov/biblio/1035640

Anderson, T.M., Ingersoll, D., Hensley, A., Staiger, C., Leonard, J.C., & Leonard, J.C. (2010). Synthesis of an ionic liquid with an iron coordination cation. Dalton Transactions, 39(37), pp. 8609-8612. https://doi.org/10.1039/c0dt00523a

Kolda, T.G., Dunlavy, D.M., & Dunlavy, D.M. (2010). Shifted power method for computing tensor eigenpairs. https://doi.org/10.2172/1005408

Caskey, S.A., Gaudioso, J.M., Salerno, R.M., & Salerno, R.M. (2010). Biosafety Risk Assessment Methodology. https://doi.org/10.2172/1325209

Knupp, P. (2010). Introducing the Target-Matrix Paradigm for Mesh Optimization via Node-movement [Conference]. https://www.osti.gov/biblio/1121788

Misra, M. (2010). Pipeline Development and Benchmarking [Presentation]. https://www.osti.gov/biblio/1675175

Kamm, J., Weirs, G., Swiler, L.P., Adams, B.M., Rider, W., Eldred, M., & Eldred, M. (2010). A Sensitivity Analysis of the Gas Dynamics Equations [Conference]. https://www.osti.gov/biblio/1121790

Devine, K. (2010). Parallel mesh management using interoperable tools [Conference]. https://www.osti.gov/biblio/1027043

Muller, R.P., Schultz, P.A., Cygan, R.T., Frischknecht, A.L., Larson, R., Kanouff, M.P., Hewson, J.C., Moffat, H.K., & Moffat, H.K. (2010). Modeling thermal abuse of Li ion transportation batteries [Conference]. https://www.osti.gov/biblio/1027028

Hart, W.E., Hart, D., Klise, K.A., Watson, J., Brounstein, T.R., McKenna, S.A., & McKenna, S.A. (2010). Sandia National Laboratories INFORMS Computing Society 2011 Abstracts [Conference]. https://www.osti.gov/biblio/1121774

Heroux, M.A. (2010). Expanding the Trilinos developer community. https://doi.org/10.2172/1008113

Romero, E., Brooks, C.F., Shelden, B., Torczynski, J.R., Kraynik, A.M., Romero, L., Benavides, G.L., & Benavides, G.L. (2010). Vertically Vibrated Gas-Liquid Interfaces: Surface Deformation and Breakup [Presentation]. https://www.osti.gov/biblio/1675273

Keiter, E., Thornquist, H., Hoekstra, R.J., Russo, T.V., Schiek, R.L., & Schiek, R.L. (2010). Parallel Transistor-Level Circuit Simulation [Presentation]. https://doi.org/10.1007/978-94-007-0149-6_1

Diegert, C. (2010). A combinatorial method for tracing objects using semantics of their shape [Conference]. https://www.osti.gov/biblio/1278837

Collis, S.S., Ober, C.C., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2010). Unstructured Discontinuous Galerkin for Seismic Inversion [Conference]. https://www.osti.gov/biblio/1282172

Tuminaro, R.S., Siefert, C., Hu, J.J., Gaidamour, J., & Gaidamour, J. (2010). Toward robust scalable algebraic multigrid solvers [Conference]. https://www.osti.gov/biblio/1028459

Grest, G.S., Cheng, S., Lechman, J.B., Plimpton, S.J., & Plimpton, S.J. (2010). Drying/self-assembly of nanoparticle suspensions. https://doi.org/10.2172/993324

Schultz, P.A., Criscenti, L., Sassani, D., & Sassani, D. (2010). NEAMS Waste IPSC - Subcontinuum modeling for waste forms [Presentation]. https://www.osti.gov/biblio/1675130

Collis, S.S., Ober, C.C., Overfelt, J.R., & Overfelt, J.R. (2010). Elastic wave propagation in variable media using a discontinuous Galerkin method [Conference]. https://www.osti.gov/biblio/1028440

Moorman, M.W., Ricken, B., Renzi, R.F., Manginell, R., Branda, C., Misra, M., Negrete, O.A., Carson, B., & Carson, B. (2010). A microfluidic single-cell isolation device for ensemble measurements of viral hemorrhagic fever pathogenesis in macrophages [Conference]. https://www.osti.gov/biblio/1121687

Wheeler, K.B. (2010). Qthreads: A lightweight threading research vehicle [Presentation]. https://www.osti.gov/biblio/1675084

Wolf, M., Heroux, M.A., & Heroux, M.A. (2010). Obtaining Parallelism on Multicore and GPU Architectures in a Painless Manner [Conference]. https://www.osti.gov/biblio/1121701

Debenedictis, E. (2010). Moore's Law [Conference]. https://www.osti.gov/biblio/1121670

Crossno, P.J., Harger, J., & Harger, J. (2010). Evaluating Visual Analytics Toolkits [Presentation]. https://www.osti.gov/biblio/1732239

Oldfield, R., Bader, B., & Bader, B. (2010). High Performance Computing and Informatics [Presentation]. https://www.osti.gov/biblio/1675097

Creighton, J., Coltrin, M.E., Baucom, K.C., Pawlowski, R., Figiel, J.J., & Figiel, J.J. (2010). Characterization of the Chemical Signal Created by CO Oxidation on Pt/GaN Nanodiodes [Presentation]. https://www.osti.gov/biblio/1692338

Parks, M.L. (2010). Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1684857

Swiler, L.P., Knupp, P., & Knupp, P. (2010). Predictive Capability Maturity Model (PCMM) [Conference]. https://www.osti.gov/biblio/1028336

Willenbring, J.M. (2010). Framework and Tools - Trilinos Capability Area [Presentation]. https://www.osti.gov/biblio/1675099

Phipps, E.T. (2010). Stokhos : Trilinos tools for embedded stochastic-Galerkin uncertainty quantification methods [Conference]. https://www.osti.gov/biblio/1030388

Hu, J.J. (2010). Trilinos Linear and Eigen Solvers Capability Area Update [Presentation]. https://www.osti.gov/biblio/1675101

Devine, K., Copps, K.D., Ebeida, M., Hensinger, D.M., Knupp, P., Sjaardema, G.D., Williams, A.B., & Williams, A.B. (2010). TUG 2010 meshes, geometry and load balancing capability area [Conference]. https://www.osti.gov/biblio/1030329

Spotz, W.F. (2010). PyTrilinos tutorial [Conference]. https://www.osti.gov/biblio/1030316

Cyr, E.C., Bond, S.D., & Bond, S.D. (2010). Goal-Oriented Error Estimation and Multilevel Preconditioning for the Poisson-Boltzmann Equation. Springer Journal of Scientific Computing. https://www.osti.gov/biblio/1121614

Riesen, R., Ferreira, K.B., Stearley, J., & Stearley, J. (2010). See applications run and throughput jump: The case for redundant computing in HPC [Conference]. Proceedings of the International Conference on Dependable Systems and Networks. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=77956584397&origin=inward

Hao, F., Armiento, R., Mattsson, A.E., & Mattsson, A.E. (2010). Subsystem functionals and the missing ingredient of confinement physics in density functionals [Conference]. Physical Review B - Condensed Matter and Materials Physics. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=77957661403&origin=inward

Witzel, W., Landahl, A.J., & Landahl, A.J. (2010). Workshop: Control and optimization of open quantum systems [Presentation]. https://www.osti.gov/biblio/1675295

Carpenter, J.H., Flicker, D., Root, S., Magyar, R.J., Hanson, D.L., Mattsson, T., & Mattsson, T. (2010). High fidelity equation of state for xenon [Conference]. https://www.osti.gov/biblio/1122477

Speed, A., Warrender, C., & Warrender, C. (2010). Adversary phase change detection using S.O.M. and text data [Conference]. https://www.osti.gov/biblio/1024473

Rao, R.R., Pawlowski, R., Brotherton, C.M., Cipiti, B.B., Domino, S.P., Jove-Colon, C.F., Moffat, H.K., Nemer, M., Noble, D.R., O'Hern, T.J., & O'Hern, T.J. (2010). Mesoscale to plant-scale models of nuclear waste reprocessing [Conference]. https://www.osti.gov/biblio/1024463

Moreland, K., Fabian, N., & Fabian, N. (2010). Visualization on supercomputing platform level II ASC milestone (3537-1B) results from Sandia. https://doi.org/10.2172/992321

Hemmert, K.S. (2010). Photonic Interconnection Technology and Computer Architecture Scaling [Conference]. https://www.osti.gov/biblio/1122435

Sears, M.P., Lehoucq, R.B., & Lehoucq, R.B. (2010). The Statistical Mechanical Foundations of Peridynamics: Momentum and Energy Conservation Laws. Physical Review E. https://www.osti.gov/biblio/1122347

Silling, S.A. (2010). Peridynamic modeling of fracture in elastomers and composites [Conference]. https://www.osti.gov/biblio/1028353

Phillips, C.A., Carr, R.D., Ganti, A., Landahl, A.J., & Landahl, A.J. (2010). Scheduling error correction operations for a quantum computer [Conference]. https://www.osti.gov/biblio/1027022

Burch, N.J., Lehoucq, R.B., & Lehoucq, R.B. (2010). Continuous Time Random Walks on Bounded Domains. Physical Review E. https://www.osti.gov/biblio/1122162

Bochev, P., Paskaleva, B.S., & Paskaleva, B.S. (2010). Development, sensitivity analysis, and uncertainty quantification of high-fidelity arctic sea ice models. https://doi.org/10.2172/1007324

Pedretti, K.T.T., Levenhagen, M., Ferreira, K.B., Brightwell, R.B., Kelly, S.M., Bridges, P.G., & Bridges, P.G. (2010). LDRD final report : a lightweight operating system for multi-core capability class supercomputers. https://doi.org/10.2172/1007323

Pedretti, K.T.T. (2010). LDRD final report : managing shared memory data distribution in hybrid HPC applications. https://doi.org/10.2172/1007320

Dunlavy, D.M., Crossno, P.J., & Crossno, P.J. (2010). ParaText : scalable solutions for processing and searching very large document collections : final LDRD report. https://doi.org/10.2172/1007321

Moreland, K., Fabian, N., & Fabian, N. (2010). In-Situ Visualization with the ParaView Coprocessing Library [Presentation]. https://www.osti.gov/biblio/1675214

Mitchell, S.A. (2010). Geometric comparison of popular mixture-model distances [Conference]. https://www.osti.gov/biblio/1027001

Forsythe, J.C., Branch, D.W., McKenzie, A.T., & McKenzie, A.T. (2010). Toward exascale computing through neuromorphic approaches. https://doi.org/10.2172/1007316

Aidun, J.B., Kamm, J., Lehoucq, R.B., Parks, M.L., Sears, M.P., Silling, S.A., & Silling, S.A. (2010). Peridynamics as a rigorous coarse-graining of atomistics for multiscale materials design. https://doi.org/10.2172/1007313

Dunlavy, D.M., Kolda, T.G., & Kolda, T.G. (2010). LDRD final report : leveraging multi-way linkages on heterogeneous data. https://doi.org/10.2172/1008126