Publications

Parekh, O., Phillips, C.A., Siirola, J.D., Watson, J., & Watson, J. (2012). PICO's new hierarchical branch-and-bound system for massively parallel integer programming [Conference]. https://www.osti.gov/biblio/1061056

Romero, L. (2012). On the stability of stochastically forced parametric oscillators. https://doi.org/10.2172/1051717

Wheeler, K.B., Stark, D., & Stark, D. (2012). Chapel Qthreads and Eurekas [Presentation]. https://www.osti.gov/biblio/1647828

Bochev, P. (2012). Predicting the Future Trajectory of Arctic Sea Ice: Reducing Uncertainty in High-Resolution Sea Ice Models [Presentation]. https://www.osti.gov/biblio/1658482

Brightwell, R.B. (2012). Portals 4: Enabling Application/Architecture Co-Design for High-Performance Interconnects [Conference]. https://www.osti.gov/biblio/1061080

Barrett, R.F., Dosanjh, S., Heroux, M.A., & Heroux, M.A. (2012). Toward Codesign in High Performance Computing Systems [Conference]. https://www.osti.gov/biblio/1061146

Cyr, E.C., Shadid, J.N., & Shadid, J.N. (2012). A POSTERIORI ANALYSIS OF STABILIZED FINITE ELEMENT METHODS. Proposed for publication in SIAM Journal on Scientific Computing.. https://www.osti.gov/biblio/1073472

Pedretti, K. (2012). OS Issues for HPC:Past Present Future [Presentation]. https://www.osti.gov/biblio/1647855

van Bloemen Waanders, B.G., Ray, J., & Ray, J. (2012). Decreasing the temporal complexity for. Proposed for publication in Computer methods in applied mechanics and engineering.. https://www.osti.gov/biblio/1073321

Parekh, O. (2012). Let Your Users Do the Ranking [Presentation]. https://www.osti.gov/biblio/1647932

Haill, T.A., Mattsson, T., Root, S., Magyar, R.J., & Magyar, R.J. (2012). Mesoscale simulation of mixed EOS with application to shocked platinum-doped PMP foams [Conference]. https://www.osti.gov/biblio/1104762

Davis, W.L. (2012). Using NoSQL Databases for Streaming Network Analysis [Conference]. https://www.osti.gov/biblio/1073466

Carpenter, J.H., Root, S., Cochrane, K.R., Flicker, D., Mattsson, T., & Mattsson, T. (2012). Equation of state of argon : experiments on Z, density functional theory (DFT) simulations, and wide-range model. https://doi.org/10.2172/1055655

Ralph, C.C., Leung, V.J., McLendon, W., & McLendon, W. (2012). Brief announcement: Subgraph Isomorphism on a MultiThreaded shared memory architecture [Conference]. Annual ACM Symposium on Parallelism in Algorithms and Architectures. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84864119757&origin=inward

Baczewski, A.D., Dault, D.L., Shanker, B., & Shanker, B. (2012). Accelerated Cartesian expansions for the rapid solution of periodic multiscale problems. IEEE Transactions on Antennas and Propagation, 60(9), pp. 4281-4290. https://doi.org/10.1109/TAP.2012.2207037

Aksoylu, B., Bond, S.D., Cyr, E.C., Holst, M., & Holst, M. (2012). Goal-oriented adaptivity and multilevel preconditioning for the poisson-boltzmann equation [Conference]. Journal of Scientific Computing. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84861455916&origin=inward

Hopkins, M.M., Boerner, J., Barnat, E., Crozier, P., Bettencourt, M.T., Musson, L.C., Hooper, R., Moore, C.H., & Moore, C.H. (2012). 3D vacuum arc breakdown simulation : [Conference]. https://www.osti.gov/biblio/1104785

Siirola, J.D., Watson, J., & Watson, J. (2012). Leveraging Block-Composable Optimization Modeling Environments for TransmissionSwitching and Unit Commitment [Conference]. https://www.osti.gov/biblio/1064147

Lin, P.T. (2012). Early Experiences With BG/Q: Preliminary Charon Results [Presentation]. https://www.osti.gov/biblio/1650276

Najm, H.N., Sargsyan, K., Safta, C., Debusschere, B.J., Jakeman, J.D., Eldred, M., & Eldred, M. (2012). Sparse Polynomial Representations of High Dimensional Models [Conference]. https://www.osti.gov/biblio/1073443

Hopkins, M.M., Crozier, P., Hooper, R., Boerner, J., Musson, L.C., Bettencourt, M.T., & Bettencourt, M.T. (2012). PIC-DSMC Simulations of Breakdown in Microscale Gaps [Conference]. https://www.osti.gov/biblio/1073337

Nguyen, K., Stevens, J., Grubbs, R., Pluym, T., Dominguez, J., Muller, R.P., Carroll, M.S., Jacobson, N.T., Witzel, W., Bishop, N.C., Tracy, L.A., Carr, S.M., Lu, T., Wendt, J.R., & Wendt, J.R. (2012). Pulsed electron transition measurements in a silicon double quantum dot [Conference]. https://www.osti.gov/biblio/1294362

Rohrer, B.R. (2012). An appeal for declaring research goals. Journal of Artificial General Intelligence. https://www.osti.gov/biblio/1141124

Lin, P.T., Heroux, M.A., Williams, A.B., Barrett, R.F., & Barrett, R.F. (2012). Miniapplications: a Promising Approach to Improve the Performance of Computational Mechanics Codes [Conference]. https://www.osti.gov/biblio/1140936

Lehoucq, R.B. (2012). The Peridynamic Nonlocal Continuum Theory [Conference]. https://www.osti.gov/biblio/1064087

Lehoucq, R.B. (2012). Peridynamic nonlocal mechanics [Conference]. https://www.osti.gov/biblio/1064215

Lehoucq, R.B. (2012). ANALYSIS OF THE VOLUME-CONSTRAINED PERIDYNAMIC NAVIER EQUATION OF LINEAR ELASTICITY. Proposed for publication in Journal of Elasticity.. https://www.osti.gov/biblio/1064254

Scovazzi, G. (2012). Tetrahedral Shock Hydrodynamics: Algorithms Error Estimation Adaptivity [Conference]. https://www.osti.gov/biblio/1064389

Silling, S.A. (2012). The Peridynamic J-Integral [Conference]. https://www.osti.gov/biblio/1064250

Slinkard, M.E., Heck, S., Carr, D.B., Eckert, R., Young, C.J., & Young, C.J. (2012). BROAD AREA EVENT DETECTION USING WAVEFORM CORRELATION AND DISTRIBUTED COMPUTING [Conference]. https://www.osti.gov/biblio/1064380

Blume-Kohout, R.J. (2012). When quantum tomography goes wrong. Proposed for publication in New Journal of Physics.. https://www.osti.gov/biblio/1064112

Doak, J.E., Wilson, A.T., Suppona, R.A., & Suppona, R.A. (2012). Identifying Dynamic Patterns in Network Traffic to Predict and Mitigate Cyberattacks [Presentation]. https://www.osti.gov/biblio/1658713

Groth, K.M., Swiler, L.P., & Swiler, L.P. (2012). Using limited data to construct Bayesian Networks for Human Reliability Analysis [Presentation]. https://www.osti.gov/biblio/1650253

Ferreira, K.B., Pedretti, K., Brightwell, R.B., & Brightwell, R.B. (2012). An Operating System Resilient to DRAM Failures [Conference]. https://www.osti.gov/biblio/1064154

Ferreira, K.B. (2012). The case for extensible operating systems for exascale [Conference]. https://www.osti.gov/biblio/1064401

Ferreira, K.B., Fiala, D., & Fiala, D. (2012). Exploiting Content Similarity to Improve Memory Performance in Exascale Systems [Conference]. https://www.osti.gov/biblio/1073236

Hopkins, M.M., Crozier, P., Hooper, R., Boerner, J., Musson, L.C., Bettencourt, M.T., & Bettencourt, M.T. (2012). 1D PIC-DSMC Simulations of Breakdown in Microscale Gaps [Conference]. https://www.osti.gov/biblio/1140709

Cyr, E.C. (2012). Automated Generation of Spatially Varying Stochastic Expansions for Embedded Uncertainty Quantification [Presentation]. https://www.osti.gov/biblio/1649960

Jakeman, J.D., Wildey, T., Eldred, M., & Eldred, M. (2012). Adaptive sparse grids for uncertainty quantication Enhancing approximations using a posteriori error estimation [Conference]. https://www.osti.gov/biblio/1073416

Root, S., Magyar, R.J., Cochrane, K.R., Carpenter, J.H., Shulenburger, L., Mattsson, T., & Mattsson, T. (2012). Equation of State of Cryogenic Liquid Noble Gases [Conference]. https://www.osti.gov/biblio/1064321

Eldred, M., Wildey, T., & Wildey, T. (2012). Propagation of model form uncertainty for thermal hydraulics using RANS turbulence models in Drekar. https://doi.org/10.2172/1051699

Blume-Kohout, R.J. (2012). Robust error bars for quantum tomography (slides v2) [Presentation]. https://www.osti.gov/biblio/1686327

Rogers, D. (2012). Why Vis? [Conference]. https://www.osti.gov/biblio/1064249

Blume-Kohout, R.J. (2012). Robust Error Bars for Quantum Tomography (poster) [Conference]. https://www.osti.gov/biblio/1064336

Hankin, A.M., Chou, C., Burns, G.R., Jau, Y., Landahl, A.J., Biedermann, G., Johnson, C.N., Schwindt, P., Mangan, M.A., & Mangan, M.A. (2012). Adiabatic Quantum Computing with Neutral Atoms [Conference]. https://www.osti.gov/biblio/1290141

Phipps, E.T., Pawlowski, R., & Pawlowski, R. (2012). Efficient Expression Templates for Operator Overloading-based Automatic Differentiation [Conference]. https://www.osti.gov/biblio/1064185

Phillips, C.A., Plimpton, S.J., & Plimpton, S.J. (2012). Streaming Expiring Connected Components [Presentation]. https://www.osti.gov/biblio/1658729

Moreland, K. (2012). CScADS 2012 Panel/The effect of emerging architectures on data science [Presentation]. https://www.osti.gov/biblio/1658730

Silling, S.A. (2012). Peridynamics: Applications to Corrosion Fatigue and Impact [Conference]. https://www.osti.gov/biblio/1064340

Ridzal, D., Peterson, K., & Peterson, K. (2012). Optimization-Based Remap and Transport: Part 1 A Divide and Conquer Strategy for Feature-Preserving Discretizations [Conference]. https://www.osti.gov/biblio/1116814

Ridzal, D., Peterson, K., & Peterson, K. (2012). Optimization-Based Remap and Transport: Part 2. A Divide and Conquer Strategy for Feature-Preserving Discretizations [Conference]. https://www.osti.gov/biblio/1116769

Blume-Kohout, R.J. (2012). Minimax &%23160Tomography: The &%23160Ultimate &%23160Bounds on &%23160Accuracy (slides) [Conference]. https://www.osti.gov/biblio/1064267

Shadid, J.N. (2012). Approximate Block Factorization Preconditioners for 2D Incompressible Resistive MHD [Conference]. https://www.osti.gov/biblio/1116787

Wildey, T., Shadid, J.N., & Shadid, J.N. (2012). Goal-oriented a posteriori analysis of stabilized finite element methods [Conference]. https://www.osti.gov/biblio/1073289

Cyr, E.C. (2012). Global Unknown Numbering in Panzer [Presentation]. https://www.osti.gov/biblio/1658502

Lin, P.T., Shadid, J.N., Tuminaro, R.S., Hu, J.J., & Hu, J.J. (2012). Towards Scalable Algebraic Multigrid Preconditioners for Parallel Drift-Diffusion and Magnetohydrodynamic Simulations [Conference]. https://www.osti.gov/biblio/1116587

Wildey, T. (2012). Error Decomposition and Adaptive Refinement for Stochastic Differential Equations [Presentation]. https://www.osti.gov/biblio/1658506

Pedretti, K. (2012). Graph representing the Cielo computer's interconnection network [Presentation]. https://www.osti.gov/biblio/1649920

Fabian, N., Rogers, D., & Rogers, D. (2012). Explosive Charge Blowing a Hole in a Steel Plate Animation [Conference]. https://www.osti.gov/biblio/1116614

Wheeler, K.B., Stark, D., & Stark, D. (2012). Extreme Scale Computing Grand Challenge System Software Review [Presentation]. https://www.osti.gov/biblio/1658507

Bochev, P., Ridzal, D., & Ridzal, D. (2012). Optimization-based remap and transport: a divide and conquer strategy for feature-preserving discretizations. Proposed for publication in Journal of Computational Physics.. https://www.osti.gov/biblio/1073403

Carpenter, J.H. (2012). Adaptive tabulation for verified equations of state [Conference]. AIP Conference Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84861975933&origin=inward

Thompson, A.P., Lane, J.M.D., Desjarlais, M.P., & Desjarlais, M.P. (2012). Molecular dynamics simulation of dynamic response of beryllium. AIP Conference Proceedings, 1426, pp. 1311-1314. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84861996423&origin=inward

Ridzal, D., Young, J.G., Bochev, P., Peterson, K., & Peterson, K. (2012). Optimization-based modeling with applications to transport: Part 3. Computational studies [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84861732981&origin=inward

Hammond, S. (2012). Towards Automated Memory Model Generation Via Event Tracing. Computer Journal, 56(2), pp. 156-174. https://doi.org/10.1093/comjnl/bxs051

Spotz, W.F., Heroux, M.A., & Heroux, M.A. (2012). Introduction to Usability Capability Area [Conference]. https://www.osti.gov/biblio/1067682

Spotz, W.F. (2012). Multidimensional Data in Trilinos [Conference]. https://www.osti.gov/biblio/1067516

Ebeida, M. (2012). Sifted Disk Points [Conference]. https://www.osti.gov/biblio/1117146

Lofstead, G.F., Oldfield, R., & Oldfield, R. (2012). D2T: Doubly Distributed Transactions for High Performance and Distributed Computing [Conference]. https://www.osti.gov/biblio/1067554

Berry, J. (2012). Graph Analysis with High-Performance Computing [Presentation]. https://www.osti.gov/biblio/1650472

Walsh, T., Ridzal, D., Young, J.G., & Young, J.G. (2012). Inverse Acoustic Source Identification in a Massively Parallel Finite Element Framework [Conference]. https://www.osti.gov/biblio/1064356

Bettencourt, M.T., Hoemmen, M.F., & Hoemmen, M.F. (2012). Using Miniapplications in a Mantevo Framework for Optimizing Sandia's SPARC CFD Code on Multi-Core Many-Core and GPU-Accelerated Compute Platforms [Conference]. https://www.osti.gov/biblio/1073151

Ang, J.A., Laros, J.H., Kelly, S.M., Pedretti, K., & Pedretti, K. (2012). Sandia Advanced Architecture Testbeds [Presentation]. https://www.osti.gov/biblio/1650299

Hammond, S., Ang, J.A., Barrett, R.F., Laros, J.H., Doerfler, D.W., Heroux, M.A., Trott, C.R., Crozier, P., & Crozier, P. (2012). Early Experiences with Heterogeneous Compute [Conference]. https://www.osti.gov/biblio/1064134

Carroll, M.S., Ten Eyck, G.A., Carr, S.M., Witzel, W., Dominguez, J., Rahman, R., Nielsen, E., Lu, T., Lilly, M.P., Jacobson, N.T., & Jacobson, N.T. (2012). STM fabrication of double quantum dot charge qubits for adiabatic quantum computing [Conference]. https://www.osti.gov/biblio/1073413

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2012). On the Viability of Compression for Reducing the Overheads of Checkpoint/Restart-based Fault Tolerance [Conference]. https://www.osti.gov/biblio/1064288

Stracuzzi, D.J. (2012). Modeling Individual Judgments is Only Half the Battle. Proposed for publication in Behavioral and Brain Sciences.. https://www.osti.gov/biblio/1064248

Brightwell, R.B. (2012). System Software Challenges for Exascale Systems [Presentation]. https://www.osti.gov/biblio/1650304

Taylor, M.A. (2012). global atmospheric modeling at sandia [Presentation]. https://www.osti.gov/biblio/1650313

Ang, J.A., Hammond, S., Barrett, R.F., Levenhagen, M., Rodrigues, A., Pedretti, K., Laros, J.H., Kelly, S.M., & Kelly, S.M. (2012). Early Experiences with Intel MIC Architcture [Presentation]. https://www.osti.gov/biblio/1650316

Bochev, P. (2012). A vector space model for information retrieval with generalized similarity measures [Conference]. https://www.osti.gov/biblio/1117424

Keiter, E., Warrender, C., Verley, J.C., Mei, T., Russo, T.V., Pawlowski, R., Schiek, R.L., Santarelli, K.R., Coffey, T.S., Thornquist, H., & Thornquist, H. (2012). Xyce Parallel Electronic Simulator : reference guide. https://doi.org/10.2172/1055909

Keiter, E., Warrender, C., Verley, J.C., Mei, T., Russo, T.V., Pawlowski, R., Schiek, R.L., Santarelli, K.R., Coffey, T.S., Thornquist, H., & Thornquist, H. (2012). Xyce Parallel Electronic Simulator : users' guide. https://doi.org/10.2172/1055902

Landahl, A.J. (2012). NNSA Tri-Lab LDRD Symposium: AQUARIUS [Presentation]. https://www.osti.gov/biblio/1650309

Boman, E.G., Rajamanickam, S., & Rajamanickam, S. (2012). Multithreaded Maximum Matching in Bipartite Graphs [Conference]. https://www.osti.gov/biblio/1106423

Groth, K.M., Swiler, L.P., & Swiler, L.P. (2012). SPAR-H Bayesian Network for predicting Human Error Probabilities with missing observations [Conference]. https://www.osti.gov/biblio/1064236

Wheeler, J.W., Rohrer, B.R., Salisbury, C., & Salisbury, C. (2012). An Optical 3D Force Sensor for Biomedical Devices [Conference]. https://www.osti.gov/biblio/1294336

Ebeida, M. (2012). High-Quality Parallel Depth-of-Field Using Line Samples [Conference]. https://www.osti.gov/biblio/1073187

Silling, S.A. (2012). The formulation and computation of the nonlocal J-integral in bond-based peridynamics. Proposed for publication in International Journal of Fracture.. https://www.osti.gov/biblio/1064354

Parks, M.L. (2012). Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1650279

Parks, M.L., Lehoucq, R.B., Kamm, J., & Kamm, J. (2012). A New Approach for a Nonlocal Nonlinear Conservation Law [Presentation]. https://www.osti.gov/biblio/1650280

Parks, M.L. (2012). Peridigm: A New Paradigm in Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1650281

Torczynski, J.R., Romero, L., & Romero, L. (2012). Viscous Added Mass of a Moving Solid Object in a Closed Liquid-Filled Container [Presentation]. https://www.osti.gov/biblio/1688644

Edwards, H.C. (2012). Manycore-Portable Multidimensional Arrays for Finite Element Computations [Conference]. https://www.osti.gov/biblio/1064221

Moussa, J.E. (2012). Generalized unitary Bogoliubov transformation that breaks fermion number parity. Proposed for publication in Physical Review B.. https://www.osti.gov/biblio/1064183

Silling, S.A., Cox, J., & Cox, J. (2012). Multiscale Modeling of Crack Growth in Peridynamics [Conference]. https://www.osti.gov/biblio/1064097

Thompson, A.P. (2012). Sandia atomistic materials simulation expertise features prominently in MRS Bulletin issue on many-body potentials [Presentation]. https://www.osti.gov/biblio/1650287

Dalbey, K., Swiler, L.P., & Swiler, L.P. (2012). Gaussian Process Adaptive Importance Sampling (GPAIS). Proposed for publication in Physical Review Letters.. https://www.osti.gov/biblio/1064102

Gaudioso, J.M. (2012). Facility Inspections: Why Bother? [Conference]. https://www.osti.gov/biblio/1116775

Jacobson, N.T. (2012). Modeling of relaxation in DQDs and implications for adiabaticity [Conference]. https://www.osti.gov/biblio/1064304