Publications

Hammond, S. (2012). Sandia previews initial mini-application ports to AMD's next generation Trinity APU and Tahiti Southern Island GPU Technologies [Presentation]. https://www.osti.gov/biblio/1658767

Murphy, R.C. (2012). Large Memory Systems: An Applicaon?s View [Conference]. https://www.osti.gov/biblio/1064091

Jacobson, N.T., Witzel, W., Nguyen, K., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2012). Modeling of Relaxation in DQDs and Implications for Adiabaticity [Presentation]. https://www.osti.gov/biblio/1650260

Hemmert, K.S. (2012). Extreme-Scale Computing Grand Challenge (XGC) Energy-Efficient Data Movement for Next-Generation Computing [Presentation]. https://www.osti.gov/biblio/1658761

Plimpton, S.J. (2012). Streaming Data Analysis for Cybersecurity More Effective Defenses Against Sophisticated Cyber-Attacks [Presentation]. https://www.osti.gov/biblio/1658760

Parazzoli, L.P., Schwindt, P., Biedermann, G., Landahl, A.J., Chou, C., Jau, Y., Hankin, A.M., Burns, G.R., Johnson, C.N., Kemme, S.A., Dagel, A., Mangan, M.A., & Mangan, M.A. (2012). Adiabatic Quantum Computing with Neutral Atoms [Conference]. https://www.osti.gov/biblio/1064385

Young, K.C., Sarovar, M., Blume-Kohout, R.J., & Blume-Kohout, R.J. (2012). Error detection suppression and correction in adiabatic quantum computing [Conference]. https://www.osti.gov/biblio/1064133

Rahman, R., Nielsen, E., Bussmann, E., Carroll, M.S., & Carroll, M.S. (2012). Exchange Gate Design in Two Donor Qubits [Presentation]. https://www.osti.gov/biblio/1650263

Hopkins, M.M., Hooper, R., Crozier, P., Bettencourt, M.T., Boerner, J., Musson, L.C., & Musson, L.C. (2012). 1D Breakdown Simulations and Development of an Energy Conserving Implicit PIC-DSMC Method [Presentation]. https://www.osti.gov/biblio/1658752

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2012). The Viability of Using Compression to Decrease Message Log Sizes [Conference]. https://www.osti.gov/biblio/1064339

Berry, J., Plimpton, S.J., Comandur, S., & Comandur, S. (2012). Challenges in Streaming Graph Analysis [Conference]. https://www.osti.gov/biblio/1073138

Wildey, T. (2012). PROPAGATION OF UNCERTAINTIES USING IMPROVED SURROGATE MODELS. Proposed for publication in SIAM Journal on Uncertainty Quantification.. https://www.osti.gov/biblio/1064108

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Characterization of Pathogens in Clinical Specimens via Suppression of Host Background for Efficient Second Generation Sequencing Analyses [Conference]. https://www.osti.gov/biblio/1141142

Carroll, M.S., Witzel, W., & Witzel, W. (2012). Optimized pulses for the control of uncertain qubits. Physical Review A - Atomic, Molecular, and Optical Physics, 85(5). https://doi.org/10.1103/PhysRevA.85.052313

Aimone, J.B. (2012). The value of looking deeper? the what why and how of high fidelity adult neurogenesis modeling [Presentation]. https://www.osti.gov/biblio/1650516

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Copy of Automated Molecular Biology Platform Enabling Rapid & Efficient SGS Analysis of Pathogens in Clinical Samples [Presentation]. https://www.osti.gov/biblio/1688623

Branda, S., Jebrail, M.J., van de Vreugde, J.L., Langevin, S.A., Bent, Z., Curtis, D.J., Lane, P., Carson, B., la Bauve, E., Patel, K., Ricken, B., Schoeniger, J.S., Solberg, O.D., Williams, K.P., Misra, M., Powell, A.J., Pattengale, N.D., May, E., Lane, T., … Meagher, R.J. (2012). Automated Molecular Biology Platform Enabling Rapid & Efficient SGS Analysis of Pathogens in Clinical Samples [Conference]. https://www.osti.gov/biblio/1067707

Hopkins, M.M., Boerner, J., Barnat, E., Crozier, P., Bettencourt, M.T., Moore, C.H., Hooper, R., Musson, L.C., & Musson, L.C. (2012). Building Blocks for 3D Vacuum Arc Discharge [Conference]. https://www.osti.gov/biblio/1067530

Phipps, E.T. (2012). Exploring Embedded UQ Approaches for Improved Scalability and Efficiency [Conference]. https://www.osti.gov/biblio/1117311

Blume-Kohout, R.J. (2012). Quantum Tomography: State (& Process) of Play [Presentation]. https://www.osti.gov/biblio/1650524

Devine, K. (2012). Data Distribution for HPC Applications [Conference]. https://www.osti.gov/biblio/1067804

Salinger, A.G. (2012). A Component-Based Strategy for Scientific Application Development [Presentation]. https://www.osti.gov/biblio/1650519

Barrett, R.F., Hammond, S., Vaughan, C.T., Doerfler, D.W., Heroux, M.A., & Heroux, M.A. (2012). Navigating An Evolutionary Fast Path to Exascale [Conference]. https://www.osti.gov/biblio/1067805

Wildey, T. (2012). A posteriori Analysis of Interior Penalty Discontinuous Galerkin Methods. Proposed for publication in SIAM Journal of Numerical Analysis.. https://www.osti.gov/biblio/1067830

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2012). Detection and Correction of Silent Data Corruption for Large-Scale High-Performance Computing [Conference]. https://www.osti.gov/biblio/1067809

Ferreira, K.B. (2012). Alleviating Scalability Issues of Checkpointing Protocols [Conference]. https://www.osti.gov/biblio/1067754

Wheeler, K.B., Stark, D., Murphy, R.C., & Murphy, R.C. (2012). Task Scheduling Policy Overspecialization [Conference]. https://www.osti.gov/biblio/1067528

Phipps, E.T. (2012). Hierarchical Schur complement preconditioner for the stochastic Galerkin finite element methods. Proposed for publication in Numerical Linear Algebra with Applications.. https://www.osti.gov/biblio/1067802

Ridzal, D. (2012). Fast optimization-based conservative remap of scalar fields through aggregate mass transfer. Proposed for publication in Journal of Computational Physics.. https://www.osti.gov/biblio/1073179

Doerfler, D.W. (2012). Trinity [Conference]. https://www.osti.gov/biblio/1067563

Rogers, D., Crossno, P.J., & Crossno, P.J. (2012). araXne: A 21st Century Catalog for 21st Century Data [Conference]. https://www.osti.gov/biblio/1067531

Snow, C., Rodriguez, M.A., Wixom, R.R., Schultz, P.A., Cowgill, D.F., Kotula, P.G., & Kotula, P.G. (2012). Effects of 3He in ErT2 and Pd [Conference]. https://www.osti.gov/biblio/1117293

Blume-Kohout, R.J. (2012). Ideal state discrimination with an O(1)-qubit quantum computer [Conference]. https://www.osti.gov/biblio/1117253

Silling, S.A., Littlewood, D.J., & Littlewood, D.J. (2012). Damage and fracture modeling with peridynamics [Conference]. https://www.osti.gov/biblio/1067729

Boyce, B.L., Littlewood, D.J., & Littlewood, D.J. (2012). Peridynamic Modeling of Localization in Ductile Metals [Conference]. https://www.osti.gov/biblio/1067727

Mitchell, S.A., Ebeida, M., Knupp, P., & Knupp, P. (2012). Polygons instead of Quadtree [Conference]. https://www.osti.gov/biblio/1073427

Gao, X., Nielsen, E., Muller, R.P., Salinger, A.G., Young, R.W., Carroll, M.S., & Carroll, M.S. (2012). The QCAD framework for quantum device modeling [Conference]. https://www.osti.gov/biblio/1294367

Hoemmen, M.F., Ferreira, K.B., Heroux, M.A., Brightwell, R.B., & Brightwell, R.B. (2012). Cooperative application/OS DRAM fault recovery. https://doi.org/10.2172/1044954

Ferreira, K.B., Pedretti, K.T.T., Brightwell, R.B., & Brightwell, R.B. (2012). Evaluating operating system vulnerability to memory errors. https://doi.org/10.2172/1044952

Peterson, K. (2012). ParGAL: A Scalable Grid-Aware Analysis Library for Ultra Large Datasets [Conference]. https://www.osti.gov/biblio/1073323

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2012). Checkpoint Compression for Improved Checkpoint/Restart [Conference]. https://www.osti.gov/biblio/1067599

Rajamanickam, S., Boman, E.G., Heroux, M.A., & Heroux, M.A. (2012). ShyLU: A Hybrid-hybrid Solver for Multicore Platforms [Conference]. https://www.osti.gov/biblio/1073487

Willenbring, J.M. (2012). Trilinos Framework Update [Presentation]. https://www.osti.gov/biblio/1650475

Jakeman, J.D. (2012). A Discussion of Gaussian Process Models and Polynomial Chaos Methods for Uncertainty Quantification [Conference]. https://www.osti.gov/biblio/1073376

Rajamanickam, S., Boman, E.G., & Boman, E.G. (2012). Multithreaded Algorithms for Maximum Matching in Bipartite Graphs [Conference]. https://www.osti.gov/biblio/1073301

Boman, E.G., Devine, K., Lehoucq, R.B., Slattengren, N., & Slattengren, N. (2012). Eigensolvers on HPC Platforms [Presentation]. https://www.osti.gov/biblio/1650476

Haill, T.A., Mattsson, T., Root, S., Magyar, R.J., & Magyar, R.J. (2012). Mesoscale simulation of mixed equations of state with application to shocked platinum-doped PMP foams [Conference]. https://www.osti.gov/biblio/1097066

Phipps, E.T., Red-Horse, J.R., & Red-Horse, J.R. (2012). Reduced chaos expansions with random coefficients in reduced-dimensional stochastic modeling of coupled problems. Proposed for publication in International Journal for Numerical Methods in Engineering.. https://www.osti.gov/biblio/1067741

Klise, K.A., Hart, W.E., Phillips, C.A., & Phillips, C.A. (2012). Optimal booster station placement considering various reaction dynamics [Conference]. https://www.osti.gov/biblio/1117250

Laros, J.H., Ang, J.A., Kelly, S.M., & Kelly, S.M. (2012). Sandia Advanced Technology Test Bed Project [Conference]. https://www.osti.gov/biblio/1067695

Wills, A.E. (2012). Improving the Predictive Power of Calculations for the Warm Dense Matter Region [Conference]. https://www.osti.gov/biblio/1117246

McKenna, S.A., Hart, D., Siirola, J.D., & Siirola, J.D. (2012). Efficient Solution of Large-Scale Water Quality Models for Multi-Scenario Generation [Conference]. https://www.osti.gov/biblio/1117439

Leung, V.J. (2012). Backfilling with guarantees made as jobs arrive. Proposed for publication in Concurrency and Computation: Practice and Experience.. https://www.osti.gov/biblio/1067728

Barrett, R.F., Doerfler, D.W., Crozier, P., Heroux, M.A., Lin, P.T., Thornquist, H., Trucano, T.G., Vaughan, C.T., & Vaughan, C.T. (2012). Characterize the Role of the Mini-Applications in Predicting Key Performance Characteristics of Real Applications [Presentation]. https://www.osti.gov/biblio/1650485

Laros, J.H., Pedretti, K., Kelly, S.M., Vaughan, C.T., & Vaughan, C.T. (2012). Energy Based Performance Tuning for Large Scale High Performance Computing Systems [Conference]. https://www.osti.gov/biblio/1067589

Landahl, A.J. (2012). Dept. 1425 news note on AQC 2012 workshop [Conference]. https://www.osti.gov/biblio/1073393

Dalbey, K., Swiler, L.P., & Swiler, L.P. (2012). Gaussian Process Adaptive Importance Sampling (GPAIS) [Conference]. https://www.osti.gov/biblio/1067635

Ray, J., Lefantzi, S., McKenna, S.A., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2012). Bayesian estimation of multiscale structures in a binary medium from sparse observations [Conference]. https://www.osti.gov/biblio/1067814

Barrett, R.F., Trucano, T.G., Doerfler, D.W., Dosanjh, S., Hammond, S., Hemmert, K.S., Heroux, M.A., Lin, P.T., Pedretti, K., Rodrigues, A., & Rodrigues, A. (2012). Exascale Design Space Exploration and Co-design. Proposed for publication in Future Generation Computer Systems.. https://www.osti.gov/biblio/1067739

Plimpton, S.J., Thompson, A.P., & Thompson, A.P. (2012). Computational aspects of many-body potentials. MRS Bulletin, 37(5), pp. 513-521. https://doi.org/10.1557/mrs.2012.96

Gao, X., Nielsen, E., Muller, R.P., Young, R.W., Salinger, A.G., Carroll, M.S., & Carroll, M.S. (2012). The QCAD framework for quantum device modeling. Computational Electronics (IWCE), 2012 15th International Workshop on. https://doi.org/10.1109/IWCE.2012.6242832

Barrett, R.F., Vaughan, C.T., Heroux, M.A., & Heroux, M.A. (2012). MiniGhost : a miniapp for exploring boundary exchange strategies using stencil computations in scientific parallel computing. https://doi.org/10.2172/1039405

Weirs, G. (2012). Crossapplication of uncertainty quantification and code verification techniques [Conference]. https://www.osti.gov/biblio/1293988

Moreland, K. (2012). Dax: Data Analysis at Extreme (Poster Introduction Slides ASCR Exascale PI Meeting Spring 2012) [Presentation]. https://www.osti.gov/biblio/1688633

Shinde, S.L., Ang, J.A., Barrett, B., Barrett, R.F., Denton-Hill, K.M., Lentine, A.L., Murphy, R.C., Rodrigues, A., Hemmert, K.S., & Hemmert, K.S. (2012). Overview of the XGC project [Presentation]. https://www.osti.gov/biblio/1657020

Phipps, E.T. (2012). A posteriori error analysis and adaptive construction of surrogate models for probabilities [Conference]. https://www.osti.gov/biblio/1294350

Rahman, R. (2012). Electronic states of Ge/Si nanocrystals with crescent-shaped Ge-cores. Proposed for publication in Journal of Applied Physics.. https://www.osti.gov/biblio/1068463

Schultz, P.A. (2012). Simple intrinsic defects in GaAs : numerical supplement. https://doi.org/10.2172/1039410

Kelly, S.M., Ang, J.A., Laros, J.H., & Laros, J.H. (2012). Providing Test Beds for Exascale Explorations - Intro Slides [Conference]. https://www.osti.gov/biblio/1140989

Wills, A.E. (2012). Improving the Predictive Power of Calculations for Computational Materials Design [Conference]. https://www.osti.gov/biblio/1117604

Holm, E.A., Tikare, V., Plimpton, S.J., & Plimpton, S.J. (2012). Simulation of Recrystallization in Uranium Dioxide Nuclear Fuels [Conference]. https://www.osti.gov/biblio/1078612

Jakeman, J.D. (2012). Locally Adaptive Generalised Sparse Grids [Conference]. https://www.osti.gov/biblio/1078654

Red-Horse, J.R., Wildey, T., & Wildey, T. (2012). Stochastic Dimension Reduction Techniques for Uncertainty Quantification of Multiphysics Systems [Conference]. https://www.osti.gov/biblio/1117584

Ferreira, K.B., Pedretti, K., Brightwell, R.B., & Brightwell, R.B. (2012). Evaluating Operating System Vulnerability to Memory Errors [Conference]. https://www.osti.gov/biblio/1067552

Kelly, S.M., Laros, J.H., & Laros, J.H. (2012). A peer-to-peer architecture for supporting dynamic shared libraries in large-scale systems [Conference]. https://www.osti.gov/biblio/1067627

Barrett, B., Stark, D., & Stark, D. (2012). Scalable Parallel Runtime: Lightweight Task Spawning in a Distributed Memory Environment [Conference]. https://www.osti.gov/biblio/1078605

Hemmert, K.S., Naegle, J.H., & Naegle, J.H. (2012). Co-design in the Tri-lab Networking Environment [Presentation]. https://www.osti.gov/biblio/1657000

Moreland, K., Rogers, D., & Rogers, D. (2012). Visualization and Analysis: NNSA/ASCR Collaboration for the Future (poster) [Presentation]. https://www.osti.gov/biblio/1732209

Parks, M.L., Littlewood, D.J., Silling, S.A., Lehoucq, R.B., Mitchell, J.A., & Mitchell, J.A. (2012). Peridynamics for Material Failure [Presentation]. https://www.osti.gov/biblio/1656996

Laros, J.H. (2012). Towards High Performance Computing Application Energy Efficiency [Conference]. https://www.osti.gov/biblio/1067819

Ridzal, D. (2012). A Matrix-Free Trust-Region SQP Algorithm for Large-Scale Optimization [Presentation]. https://www.osti.gov/biblio/1656997

Gaidamour, J., Siefert, C., Tuminaro, R.S., & Tuminaro, R.S. (2012). MueLu - A Flexible Parallel Multigrid Framework [Conference]. https://www.osti.gov/biblio/1117538

Oldfield, R. (2012). Developing Integrated Data Services for Cray Systems with a Gemini Interconnect [Conference]. https://www.osti.gov/biblio/1067597

Schultz, P.A. (2012). First principles predictions of intrinsic defects in aluminum arsenide, AlAs : numerical supplement. https://doi.org/10.2172/1039396

Moreland, K. (2012). What's New in ParaView - DOECGF 2012 [Presentation]. https://www.osti.gov/biblio/1657008

Witzel, W., Carroll, M.S., & Carroll, M.S. (2012). Quantum Decoherence of the Central Spin in a Sparse System of Dipolar Coupled Spins. Physical Review B, 86(3). https://doi.org/10.1103/PhysRevB.86.035452

Moreland, K. (2012). Redirecting Research in Large-Format Displays for Visualization [Conference]. https://www.osti.gov/biblio/1067813

Laros, J.H. (2012). Towards High Performance Computing Application Energy Efficiency [Conference]. https://www.osti.gov/biblio/1067547

Mosso, S.J., Voth, T.E., & Voth, T.E. (2012). An implementation of the X-FEM for Eulerian solid-mechanics (Conference Paper) [Conference]. https://www.osti.gov/biblio/1294175

Mosso, S.J., Voth, T.E., & Voth, T.E. (2012). An implementation of the X-FEM for Eulerian solid-mechanics (Conference Presentation) [Conference]. https://www.osti.gov/biblio/1294176

Siefert, C., Voth, T.E., Bochev, P., & Bochev, P. (2012). Electromagnetic eXtended Finite Elements for Accurate Resolution of Multi-Material Cells [Conference]. https://www.osti.gov/biblio/1117558

Drake, R.R., Niederhaus, J.H.J., & Niederhaus, J.H.J. (2012). A Parametric Sensitivity Study in MHD Modeling for Exploding Wires Using DAKOTA in ALEGRA [Conference]. https://www.osti.gov/biblio/1117620

Rider, W., Kamm, J., & Kamm, J. (2012). Calculation verification under extreme uncertainty [Conference]. https://www.osti.gov/biblio/1088836

Berry, J., Dunlavy, D.M., Phillips, C.A., Robinson, D.G., & Robinson, D.G. (2012). Community Detection: A Bayesian Approach and the Challenge of Evaluation [Conference]. https://www.osti.gov/biblio/1067771

Kelly, S.M., Ang, J.A., Laros, J.H., & Laros, J.H. (2012). Providing Test Beds for Exascale Explorations - Technical Talk Slides [Conference]. https://www.osti.gov/biblio/1140814

Fuller, T.J., Wong, M.K., Strack, O.E., Swan, M.S., & Swan, M.S. (2012). Coupling the Hydrostatic/Deviatoric Material Responses in Shock-Hydro Code Simulations [Conference]. https://www.osti.gov/biblio/1117539

Fuller, T.J., Wong, M.K., Strack, O.E., Swan, M.S., & Swan, M.S. (2012). Coupling the Hydrostatic/Deviatoric Material Responses in Shock-Hydro Code Simulations [Conference]. https://www.osti.gov/biblio/1067763

Moreland, K. (2012). DOECGF 2012 Panel: Next-Generation Codes/Portability [Presentation]. https://www.osti.gov/biblio/1656984

Moreland, K., Crossno, P.J., Rogers, D., & Rogers, D. (2012). DOECGF 2012 Welcome [Presentation]. https://www.osti.gov/biblio/1688619

Carlberg, K.T., Tuminaro, R.S., Boggs, P.T., & Boggs, P.T. (2012). Efficient structure-preserving model reduction for nonlinear mechanical systems with application to structural dynamics: presentation [Conference]. https://www.osti.gov/biblio/1067811