Publications

Rajan, M., Vaughan, C.T., Doerfler, D.W., Barrett, R.F., Lin, P.T., Pedretti, K., Hemmert, K.S., & Hemmert, K.S. (2011). Application-Driven Analysis of Two Generations of Capability Computing Platforms: The Transition to Multicore Processors. Concurreny and Computation: Practice and Experience. https://www.osti.gov/biblio/1106615

Ray, J., van Bloemen Waanders, B.G., Lefantzi, S., & Lefantzi, S. (2011). Estimation of finescale conductivity fields from multiscale observations [Conference]. https://www.osti.gov/biblio/1288661

Parks, M.L. (2011). Computational Materials Modeling with Peridynamics [Presentation]. https://www.osti.gov/biblio/1663330

Parks, M.L., Lehoucq, R.B., Lehoucq, R.B., & Lehoucq, R.B. (2011). A New Model for Nonlocal Advection [Conference]. https://www.osti.gov/biblio/1106790

Moreland, K. (2011). Large-Scale Interactive Visualization with ParaView [Presentation]. https://www.osti.gov/biblio/1663331

Boyce, B.L., Foulk, J.W., Littlewood, D.J., Mota, A., Ostien, J.T., Silling, S.A., Spencer, B.W., Wellman, G.W., Bishop, J.E., Brown, A., Cordova, T.E., Cox, J., Crenshaw, T.B., Dion, K., Emery, J., & Emery, J. (2011). Ductile failure X-prize. https://doi.org/10.2172/1029764

Najm, H.N., Debusschere, B.J., Eldred, M., & Eldred, M. (2011). Quantification of Uncertainty in Extreme Scale Computations (QUEST) [Presentation]. https://www.osti.gov/biblio/1663334

Ferreira, K.B., Oldfield, R., Stearley, J., Laros, J.H., Pedretti, K.T.T., Brightwell, R.B., & Brightwell, R.B. (2011). Keeping checkpoint/restart viable for exascale systems. https://doi.org/10.2172/1029780

Reese, G.M., Dohrmann, C.R., Williams, A.B., Pedretti, K., & Pedretti, K. (2011). Sierra Structural Dynamics Multi-threaded evaluations [Conference]. https://www.osti.gov/biblio/1106636

Parks, M.L. (2011). Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1663343

Shadid, J.N., Pawlowski, R., Cyr, E.C., Weber, P.D., & Weber, P.D. (2011). Reactor Core Sub-Assembly Simulations Using a Stabilized Finite Element Method [Conference]. https://www.osti.gov/biblio/1118676

Ward, H.L., Martinez, D., Curry, M.L., & Curry, M.L. (2011). Power Use of Disk Subsystems in Supercomputers [Conference]. https://www.osti.gov/biblio/1106089

Vaughan, C.T. (2011). Putting OpenMP into CTH (Maybe) [Conference]. https://www.osti.gov/biblio/1106247

Branda, C., James, C.D., Kozina, C.L., Manginell, R., Misra, M., Moorman, M.W., Negrete, O.A., Ricken, B., Wu, M., & Wu, M. (2011). Investigation of type-I interferon dysregulation by arenaviruses : a multidisciplinary approach. https://doi.org/10.2172/1029825

Wilson, A.T., Robinson, D.G., & Robinson, D.G. (2011). Tracking topic birth and death in LDA. https://doi.org/10.2172/1029827

Moreland, K. (2011). IceT (Chapter in High Performance Visualization) [Presentation]. https://www.osti.gov/biblio/1663349

Knupp, P. (2011). Enabling PCMM-based Assessment [Conference]. https://www.osti.gov/biblio/1118664

Moreland, K. (2011). Dax One Page Overview (Fall 2011) [Presentation]. https://www.osti.gov/biblio/1663360

Pawlowski, R., Phipps, E.T., Owen, S.J., Siefert, C., Staten, M., & Staten, M. (2011). Applying template-based generic programming to the simulation and analysis of partial differential equations. Scientific Programming. https://www.osti.gov/biblio/1106473

Parks, M.L., Littlewood, D.J., Salinger, A.G., Mitchell, J.A., & Mitchell, J.A. (2011). Peridigm summary report : lessons learned in development with agile components. https://doi.org/10.2172/1029829

Boman, E.G., Heroux, M.A., Keiter, E., Rajamanickam, S., Schiek, R.L., Thornquist, H., & Thornquist, H. (2011). Enabling Next-Generation Parallel Circuit Simulation with Trilinos [Conference]. https://www.osti.gov/biblio/1118668

Heroux, M.A. (2011). LDRD final report : autotuning for scalable linear algebra. https://doi.org/10.2172/1029773

Ebeida, M., Knupp, P., & Knupp, P. (2011). Efficient Maximal Poisson-Disk Sampling - presentation slides [Conference]. https://www.osti.gov/biblio/1143429

Eldred, M. (2011). Investigation of advanced UQ for CRUD prediction with VIPRE. https://doi.org/10.2172/1029759

Rohrer, B.R. (2011). Final report for LDRD project 11-0029 : high-interest event detection in large-scale multi-modal data sets : proof of concept. https://doi.org/10.2172/1029755

Rohrer, B.R., Morrow, J.D., Rothganger, F., Xavier, P.G., Wagner, J.S., & Wagner, J.S. (2011). Final report for LDRD project 11-0783 : directed robots for increased military manpower effectiveness. https://doi.org/10.2172/1029758

Benner, R.E., Onunkwo, U., Johnson, J.A., Naegle, J.H., Patel, J., Pearson, D.B., Shelburg, J.S., Wheeler, K.B., Wright, B., Zage, D.J., & Zage, D.J. (2011). Investigating the effectiveness of many-core network processors for high performance cyber protection systems. Part I, FY2011. https://doi.org/10.2172/1029789

Peterson, K., Bochev, P., & Bochev, P. (2011). Control Volume Finite Element Method with Multidimensional Edge Element Scharfetter-Gummel upwinding. Part 2. Computational Study. https://doi.org/10.2172/1113868

Strohbeen, B. (2011). Overlapping Communication and Computation using Cray's Gemini Interconnect [Presentation]. https://www.osti.gov/biblio/1661835

Weirs, G. (2011). Challenges for Assessment of Modeling and Simulation in the Large [Conference]. https://www.osti.gov/biblio/1120200

Murphy, R.C. (2011). Through the Exascale Looking-Glass and What Alice Found There [Conference]. https://www.osti.gov/biblio/1106742

Witzel, W., Rahman, R., Carroll, M.S., & Carroll, M.S. (2011). Spin-Bath Decoherence of a Si/SiGe Quantum Dot [Presentation]. https://www.osti.gov/biblio/1688663

Eldred, M. (2011). Overview of Uncertainty Quantification Algorithm R&D in the DAKOTA Project [Presentation]. https://www.osti.gov/biblio/1661848

Pedretti, K. (2011). Kitten: A Lightweight Operating System for Ultrascale Supercomputers [Presentation]. https://www.osti.gov/biblio/1662053

Silling, S.A. (2011). Coarse Graining in Peridynamics [Conference]. https://www.osti.gov/biblio/1106433

Carpenter, J.H. (2011). ADAPTIVE TABULATION FOR VERIFIED EQUATIONS OF STATE [Conference]. https://www.osti.gov/biblio/1107028

Laros, J.H. (2011). Measuring and tuning energy efficiency on large scale high performance computing platforms. https://doi.org/10.2172/1035312

McKenna, S.A., van Bloemen Waanders, B.G., Ray, J., & Ray, J. (2011). Bayesian upscaling of binary media with unresolved fine-scale spatial structures. Advances in Water Resources. https://www.osti.gov/biblio/1106333

Berry, J., Plimpton, S.J., & Plimpton, S.J. (2011). Challenges in Streaming Graph Analysis [Conference]. https://www.osti.gov/biblio/1143436

Rahman, R., Muller, R.P., Nielsen, E., Carroll, M.S., & Carroll, M.S. (2011). Impact of charged defects on silicon MOS quantum dots [Conference]. https://www.osti.gov/biblio/1143483

Rajamanickam, S., Boman, E.G., Devine, K., Leung, V.J., Riesen, L., & Riesen, L. (2011). Tutorial: The Zoltan Toolkit [Conference]. https://www.osti.gov/biblio/1143440

Wilson, A.T., Dunlavy, D.M., & Dunlavy, D.M. (2011). TopicView: Understanding Document Relationships Using Latent Dirichlet Allocation Models [Conference]. https://www.osti.gov/biblio/1106132

Stearley, J., Robinson, D.G., Ferreira, K.B., & Ferreira, K.B. (2011). A Model-Based Case for Redundant Computation. https://doi.org/10.2172/1113872

Littlewood, D.J., Martinez, M., & Martinez, M. (2011). Building a framework for flow through heterogeneous fractured media based on peridynamics [Conference]. https://www.osti.gov/biblio/1120172

Swiler, L.P., Eldred, M., & Eldred, M. (2011). Reliability Methods: Determining small failure probabilities [Conference]. https://www.osti.gov/biblio/1106872

Thompson, A.P. (2011). Interatomic Potentials in LAMMPS [Conference]. https://www.osti.gov/biblio/1143457

Dunlavy, D.M. (2011). All-at-once Optimization for Coupled Matrix and Tensor Factorizations (CMTF) [Conference]. https://www.osti.gov/biblio/1106156

Root, S., Magyar, R.J., Wills, A.E., Mattsson, T., & Mattsson, T. (2011). Liquid Krypton Hugoniot to Megabar Pressures [Conference]. https://www.osti.gov/biblio/1106955

Watson, J., Siirola, J.D., Legg, S., & Legg, S. (2011). A Stochastic Programming Approach for Gas Detector Placement in Process Facilities [Conference]. https://www.osti.gov/biblio/1143451

Shadid, J.N. (2011). Modeling reactive transport in deformable porous media using the theory of interacting continua [Presentation]. https://www.osti.gov/biblio/1662116

Leung, V.J. (2011). Backfilling with guarantees granted upon job submission [Conference]. https://www.osti.gov/biblio/1143438

Davison, S.M., Jayaraman, S., Cordaro, J.G., Kruizenga, A.M., & Kruizenga, A.M. (2011). THERMOPHYSICAL PROPERTY ESTIMATIONS OF MOLTEN SALTS [Conference]. https://www.osti.gov/biblio/1106152

Nusbaum, K.L. (2011). Optimizing Tpetra%3CU%2B2019%3Es sparse matrix-matrix multiplication routine. https://doi.org/10.2172/1029781

Wagner, J.S. (2011). Cognitive Science & Technologies Programmatic overview presentation for the 2011 External Advisory Board [Conference]. https://www.osti.gov/biblio/1143468

Silling, S.A. (2011). Combined finite element and peridynamic analyses for predicting failure in a stiffened composite curved panel with a central slot. Composite Structures. https://www.osti.gov/biblio/1121937

Magyar, R.J. (2011). Exact time-dependent Kohn-Sham potential for interacting few-body systems [Conference]. https://www.osti.gov/biblio/1288666

Niederhaus, J.H.J., Voth, T.E., Mosso, S.J., & Mosso, S.J. (2011). Code verification for the eXtended Finite Element Method (XFEM): the compound cohesionless impact problem [Conference]. https://www.osti.gov/biblio/1288507

Wildey, T. (2011). Quantification and Reduction of Uncertainties for Regional Scale Climate Predictions [Presentation]. https://www.osti.gov/biblio/1662132

Carpenter, J.H., Wills, A.E., Rider, W., Berry, R.D., Debusschere, B.J., Robinson, A.C., Drake, R.R., & Drake, R.R. (2011). Fundamental issues in the representation and propagation of uncertain equation-of-state information in shock hydrodynamics [Conference]. https://www.osti.gov/biblio/1140959

Carr, R.D., Phillips, C.A., Parekh, O., & Parekh, O. (2011). Towards Certficates for Integer Programming Computations [Conference]. https://www.osti.gov/biblio/1106366

Carr, R.D., Parekh, O., & Parekh, O. (2011). Approximating a 2-edge-connected subgraph problem [Conference]. https://www.osti.gov/biblio/1106512

Moreland, K. (2011). ParaView + ADIOS: ADIOS Meeting Slides [Presentation]. https://www.osti.gov/biblio/1662138

Moreland, K. (2011). Parallel Visualization Tools - Chapter for UltraVis final report [Presentation]. https://www.osti.gov/biblio/1662139

Hart, W.E., Murray, R., Phillips, C.A., & Phillips, C.A. (2011). Minimize impact or maximize benefit: The role of objective function in approximately optimizing sensor placement for municipal water distribution networks [Conference]. World Environmental and Water Resources Congress 2011: Bearing Knowledge for Sustainability - Proceedings of the 2011 World Environmental and Water Resources Congress. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79960395767&origin=inward

Lakkaraju, K., Adams, S.S., Abbott, R.G., Forsythe, J.C., & Forsythe, J.C. (2011). Communications-based automated assessment of team cognitive performance [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79960291073&origin=inward

Lakkaraju, K., Adams, S.S., Abbott, R.G., Forsythe, J.C., & Forsythe, J.C. (2011). Communications-based automated assessment of team cognitive performance [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79960291073&origin=inward

Bridges, P.G., Arnold, D., Pedretti, K., & Pedretti, K. (2011). VM-based slack emulation of large-scale systems [Conference]. Proceedings of the 1st International Workshop on Runtime and Operating Systems for Supercomputers, ROSS 2011. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79959936580&origin=inward

Heroux, M.A. (2011). Improving CSE software through reproducibility requirements [Conference]. Proceedings - International Conference on Software Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79959868251&origin=inward

Lange, J.R., Pedretti, K., Dinda, P., Bae, C., Bridges, P.G., Soltero, P., Merritt, A., & Merritt, A. (2011). Minimal-overhead virtualization of a large scale supercomputer [Conference]. ACM SIGPLAN Notices. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=80053554606&origin=inward

Lane, J.M.D., Grest, G.S., Thompson, A.P., Desjarlais, M.P., Mattsson, T., & Mattsson, T. (2011). Shock compression of dense polymer and foam systems using molecular dynamics and DFT [Conference]. https://www.osti.gov/biblio/1140554

Sunderland, D., Porter, V.L., Heroux, M.A., & Heroux, M.A. (2011). Multicore/GPGPU Portable Computational Kernels via Multidimensional Arrays [Conference]. https://www.osti.gov/biblio/1106293

Lehoucq, R.B. (2011). The statistical mechanical foundation of the peridynamic nonlocal continuum theory: energy and momentum conservation laws. Physical Review E, 84(3). https://doi.org/10.1103/PhysRevE.84.031112

Forsythe, J.C., Abbott, R.G., Adams, S.S., Hendrickson, S.M., Trumbo, M.C.S., Haass, M.J., & Haass, M.J. (2011). Individual differences and a science of human performance [Conference]. https://www.osti.gov/biblio/1140774

Lehoucq, R.B. (2011). Graph and Nonlocal Laplacians [Conference]. https://www.osti.gov/biblio/1288755

Pedretti, K., Brightwell, R.B., Doerfler, D.W., Hemmert, K.S., Laros, J.H., & Laros, J.H. (2011). The Impact of Injection Bandwidth Performance on Application Scalability [Conference]. https://www.osti.gov/biblio/1107219

Ebeida, M., Mitchell, S.A., Leung, V.J., Bishop, J.E., Martinez, M., & Martinez, M. (2011). Mesh Generation for Modeling and Simulation of Carbon Sequestration Process [Conference]. https://www.osti.gov/biblio/1107220

Silling, S.A. (2011). Coarse Graining in Peridynamics [Conference]. https://www.osti.gov/biblio/1140608

Parks, M.L., Kamm, J., Lehoucq, R.B., & Lehoucq, R.B. (2011). A New Approach to Nonlocal Advection [Presentation]. https://www.osti.gov/biblio/1661781

Heroux, M.A. (2011). Preparing for Tomorrow's Systems: Manycore Resilience Patterns and Transition [Conference]. https://www.osti.gov/biblio/1107203

Hart, W.E., Phillips, C.A., & Phillips, C.A. (2011). Minimizing Impact or Maximizing Benefit: The Role of Objective Function in Approximately Optimzing Sensor Placement for Municipal Water Distribution Systems [Conference]. https://www.osti.gov/biblio/1106795

Hu, J.J., Gaidamour, J., Siefert, C., Tuminaro, R.S., & Tuminaro, R.S. (2011). Algebraic Multigrid for Systems of PDEs Based on Energy Minimization Principles [Conference]. https://www.osti.gov/biblio/1140298

Boman, E.G., Rajamanickam, S., & Rajamanickam, S. (2011). Partitioning and Ordering for Sparse Linear Solvers [Conference]. https://www.osti.gov/biblio/1140299

Gaidamour, J., Hu, J.J., Tuminaro, R.S., Siefert, C., & Siefert, C. (2011). MueMat: a MATLAB Toolbox to Experiment with New Multigrid Preconditioners [Conference]. https://www.osti.gov/biblio/1140699

Hemmert, K.S. (2011). ACES/Cray High Performance Interconnect Project [Presentation]. https://www.osti.gov/biblio/1661784

Barrett, R.F., Heroux, M.A., Lin, P.T., Vaughan, C.T., Williams, A.B., & Williams, A.B. (2011). Mini-applications: Vehicles for Co-Design [Conference]. https://www.osti.gov/biblio/1140376

Rajan, M., Vaughan, C.T., Barrett, R.F., Doerfler, D.W., Lin, P.T., Pedretti, K., Hemmert, K.S., & Hemmert, K.S. (2011). Application Driven Analysis of Two Generations of Capability Computing Platforms: Purple and Cielo [Conference]. https://www.osti.gov/biblio/1140290

Boman, E.G., Rajamanickam, S., & Rajamanickam, S. (2011). A STUDY OF COMBINATORIAL ISSUES IN A SPARSE HYBRID SOLVER [Conference]. https://www.osti.gov/biblio/1106728

Rodrigues, A. (2011). Structural Simulation Toolkit [Presentation]. https://doi.org/10.1145/1964218.1964225

Root, S., Wills, A.E., Mattsson, T., Magyar, R.J., & Magyar, R.J. (2011). Liquid Krypton Hugoniot at Megabar Pressures [Conference]. https://www.osti.gov/biblio/1106515

Silling, S.A., Lehoucq, R.B., & Lehoucq, R.B. (2011). Recent Developments in Peridynamics [Conference]. https://www.osti.gov/biblio/1106847

Stracuzzi, D.J. (2011). A Plausibility-Based Approach to Incremental Inference [Conference]. https://www.osti.gov/biblio/1140688

Smith, T.M., Shadid, J.N., Pawlowski, R., Cyr, E.C., & Cyr, E.C. (2011). Reactor Core Sub-Assembly Simulations Using a Stabilized Finite Element Method [Conference]. https://www.osti.gov/biblio/1106234

Martinez, M., Bishop, J.E., Notz, P.K., Turner, D.Z., & Turner, D.Z. (2011). Coupled Flow and Mechanics in Porous and Fractured Media [Conference]. https://www.osti.gov/biblio/1106920

Lin, P.T., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2011). Performance of an AMG-Based Preconditioning Technique for Fully-Coupled Solution of Large-Scale Multiphysics Systems [Conference]. https://www.osti.gov/biblio/1140618

Glass, R., Harger, J., Conrad, S.H., Zagonel, A., Beyeler, W.E., Finley, M., & Finley, M. (2011). Development of an Agent Based Model for the Inter-operation Transfer of Cattle within the Livestock Industry [Conference]. https://www.osti.gov/biblio/1140782

Siefert, C. (2011). Block Preconditioning for Implicit Ocean Systems [Presentation]. https://www.osti.gov/biblio/1661809

Voth, T.E., Mosso, S.J., Niederhaus, J.H.J., & Niederhaus, J.H.J. (2011). An implemention of the X-FEM for eulerian solid-mechanics [Conference]. https://www.osti.gov/biblio/1288779

Plimpton, S.J. (2011). Efficient Exact and Approximate Kinetic Monte Carlo Algorithms [Conference]. https://www.osti.gov/biblio/1120210

Gerstenberger, A., Tuminaro, R.S., & Tuminaro, R.S. (2011). Algebraic Multigrid Techniques for the eXtended Finite Element Method [Conference]. https://www.osti.gov/biblio/1106261

Robinson, A.C. (2011). On the utility of the boris approach for dealing with fast magnetosonic wave speeds in an ALE MHD modeling context [Conference]. https://www.osti.gov/biblio/1289624