Publications

Barrett, R.F., Hammond, S., Hsieh, M.N., & Hsieh, M.N. (2013). GPU Acceleration of Data Assembly in Finite Element Methods and Its Energy Implications [Conference]. https://www.osti.gov/biblio/1078756

Ferreira, K.B., Levy, S.L.N., & Levy, S.L.N. (2013). A Simulation Infrastructure for Examining the Performance of Resilience Strategies at Scale [Conference]. https://www.osti.gov/biblio/1078709

Barrett, B., Brightwell, R.B., Hemmert, K.S., Hammond, S., & Hammond, S. (2013). The Impact of Hybrid-Core Processors on MPI Message Rate [Conference]. https://www.osti.gov/biblio/1078721

Barrett, B., Brightwell, R.B., & Brightwell, R.B. (2013). Design Implementation and Performance Evaluation of MPI 3.0 on Portals 4.0 [Conference]. https://www.osti.gov/biblio/1078745

Lofstead, G.F. (2013). Data Management Issues for Exascale Platforms [Presentation]. https://www.osti.gov/biblio/1660818

Berry, J., Hart, W.E., Phillips, C.A., Watson, J., & Watson, J. (2013). Sensor Placement for Municipal Water Networks [Presentation]. https://doi.org/10.1061/40685(2003)40

Adams, B.M., Eldred, M., Swiler, L.P., & Swiler, L.P. (2013). Dakota: Advanced Exploration of Simulations [Presentation]. https://www.osti.gov/biblio/1660832

Ferreira, K.B., Levy, S.L.N., & Levy, S.L.N. (2013). A simulation infrastructure for examining the performance of resilience strategies at scale. https://doi.org/10.2172/1088091

Barrett, B., Brightwell, R.B., Pedretti, K., Hemmert, K.S., & Hemmert, K.S. (2013). The portals 4.0.1 network programming interface. https://doi.org/10.2172/1095958

Valentin, M.A. (2013). Inverse Problems for NW applications in a Massively Parallel Finite Element Framework [Presentation]. https://www.osti.gov/biblio/1694443

Moreland, K. (2013). Dax (DOECGF 2013) [Presentation]. https://www.osti.gov/biblio/1660834

Moreland, K. (2013). What's New in ParaView DOECGF 2013 [Presentation]. https://www.osti.gov/biblio/1660838

Magyar, R.J., Shulenburger, L., Baczewski, A.D., & Baczewski, A.D. (2013). Time-Dependent Density Functional Theory of Extreme Environments [Conference]. https://www.osti.gov/biblio/1115691

Rodrigues, A., Hammond, S., Kelly, S.M., & Kelly, S.M. (2013). SST (micro) Introduction - Presentation to SST Hack-a-thon Attendees [Presentation]. https://www.osti.gov/biblio/1660857

Oldfield, R. (2013). Hey You got your DWA in my HPC: Experiences Integrating Analytics and HPC [Conference]. https://www.osti.gov/biblio/1078901

Hammond, S. (2013). SST Hack-a-thon Component Overview [Presentation]. https://www.osti.gov/biblio/1660867

Hemmert, K.S. (2013). Interconnect Challenges at Exascale [Presentation]. https://www.osti.gov/biblio/1660871

Barrett, B. (2013). Portals 4 Update [Presentation]. https://www.osti.gov/biblio/1660873

Pedretti, K., Vaughan, C.T., Barrett, R.F., Devine, K., Hemmert, K.S., & Hemmert, K.S. (2013). Using the Cray Gemini Performance Counters [Conference]. https://www.osti.gov/biblio/1078964

Walsh, T., Valentin, M.A., Ridzal, D., Young, J.G., & Young, J.G. (2013). Inverse Structural Acoustic Source and Material Identification in a Massively Parallel Finite Element Framework [Conference]. https://www.osti.gov/biblio/1078962

Boman, E.G., Devine, K., Rajamanickam, S., & Rajamanickam, S. (2013). Scalable Matrix Computations on Large Scale-Free Graphs Using 2D Graph Partitioning [Conference]. https://doi.org/10.1145/2503210.2503293

Lofstead, G.F. (2013). Insights for Exascale IO APIs From Building a Petascale IO API [Conference]. https://www.osti.gov/biblio/1078966

Swiler, L.P. (2013). Calibration of a Fuel Relocation Model in BISON [Conference]. https://www.osti.gov/biblio/1083827

Orient, G., Carnes, B., Romero, V., Swiler, L.P., Weirs, G., & Weirs, G. (2013). Proposal for FY14 V&V Challenge Workshop [Conference]. https://www.osti.gov/biblio/1115651

Ferreira, K.B. (2013). Shadow Computing: An Energy-Aware Resiliency Scheme for High Performance Computing [Conference]. https://www.osti.gov/biblio/1079000

Salinger, A.G., Tezaur, I.K., Perego, M., Tuminaro, R.S., Eldred, M., Jakeman, J.D., & Jakeman, J.D. (2013). Rapid Development of an Ice Sheet Climate Application using the Components-Based Approach [Presentation]. https://www.osti.gov/biblio/1661056

Moreland, K. (2013). Big Data and Visualization: DOECGF 2013 Panel [Presentation]. https://www.osti.gov/biblio/1661065

Moussa, J.E., Foiles, S.M., Schultz, P.A., & Schultz, P.A. (2013). Simulation and modeling of the electronic structure of GaAs damage clusters. Journal of Applied Physics, 113(9), pp. 1-8. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84874774575&origin=inward

Rogers, D., Moreland, K., Oldfield, R., Fabian, N., & Fabian, N. (2013). Data co-processing for extreme scale analysis level II ASC milestone (4745). https://doi.org/10.2172/1093707

Leung, V.J. (2013). Task Mapping for Non-contiguous Allocations [Conference]. https://www.osti.gov/biblio/1067806

Leung, V.J., Phillips, C.A., & Phillips, C.A. (2013). Efficient Scheduling to Minimize Calibrations [Conference]. https://www.osti.gov/biblio/1067803

Leung, V.J. (2013). Variations of Conservative to improve fairness [Conference]. https://www.osti.gov/biblio/1067742

O'Hern, T.J., Shelden, B., Torczynski, J.R., Romero, L., & Romero, L. (2013). Experimental Study of Stable Levitation of Bubbles in Vertically Vibrating Liquids [Conference]. https://www.osti.gov/biblio/1067558

Hankin, A.M., Jau, Y., Chou, C., Burns, G.R., Biedermann, G., Mangan, M.A., Johnson, C.N., Schwindt, P., Landahl, A.J., & Landahl, A.J. (2013). Adiabatic quantum computing with neutral atoms [Conference]. https://www.osti.gov/biblio/1503471

Landahl, A.J. (2013). AQC 2013: Universal Adiabatic Quantum Computing [Conference]. https://www.osti.gov/biblio/1067684

Pawlowski, R., Cyr, E.C., Shadid, J.N., & Shadid, J.N. (2013). Multiphysics Coupling Tools Applied to Large-scale Simulations of a Light Water Nuclear Reactor Core [Conference]. https://www.osti.gov/biblio/1067750

Pawlowski, R., Cyr, E.C., Shadid, J.N., Tuminaro, R.S., Lin, P.T., & Lin, P.T. (2013). Performance of Efficient AMG Based Preconditioners for Implicit Resistive MHD [Conference]. https://www.osti.gov/biblio/1067808

Jacobson, N.T., Nguyen, K., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2013). Distinguishing adiabaticity from relaxation in a Si double quantum dot charge qubit [Conference]. https://www.osti.gov/biblio/1067745

Parks, M.L., Lehoucq, R.B., Bond, S.D., Summers, R.M., Collis, S.S., & Collis, S.S. (2013). CM4 and Peridynamics [Presentation]. https://www.osti.gov/biblio/1656990

O'Hern, T.J., Shelden, B., Torczynski, J.R., Romero, L., & Romero, L. (2013). BEHAVIOR OF LEVITATED BUBBLES UNDER VIBRATION [Conference]. https://www.osti.gov/biblio/1067660

Parks, M.L., Littlewood, D.J., Mitchell, J.A., Silling, S.A., & Silling, S.A. (2013). Peridigm: A New Paradigm in Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1657016

Niederhaus, J.H.J., Park, B., & Park, B. (2013). Penetration of rod projectiles in semi-infinite targets : a validation test for Eulerian X-FEM in ALEGRA. https://doi.org/10.2172/1088058

Aimone, J.B. (2013). Adult Hippocampal Neurogenesis: Memory Resolution Pattern Separation or Both? [Presentation]. https://www.osti.gov/biblio/1657039

Bernstein, J.R.R., Lakkaraju, K., & Lakkaraju, K. (2013). Towards the development of richly communicative non-player characters [Conference]. https://www.osti.gov/biblio/1068508

Verzi, S.J., Bernard, M., Aimone, J.B., & Aimone, J.B. (2013). Adult Neurogenesis: Implications on Human And Computational Decision Making [Conference]. https://www.osti.gov/biblio/1145214

Root, S., Cochrane, K.R., Carpenter, J.H., Mattsson, T., & Mattsson, T. (2013). Carbon Dioxide Equation of State to Multi-Mbar Pressures: Experiments and DFT Simulations [Conference]. https://www.osti.gov/biblio/1068354

Landahl, A.J. (2013). Cambridge University Seminar: The AQUARIUS Grand Challenge Project [Presentation]. https://www.osti.gov/biblio/1657030

Littlewood, D.J., Tikare, V., Bignell, J., & Bignell, J. (2013). Informing Macroscale Constitutive Laws through Peridynamic Modeling of Grain-Scale Mechanisms in Plutonium Oxide [Conference]. https://www.osti.gov/biblio/1115941

Silling, S.A. (2013). Opportunities and Challenges in Peridynamics [Conference]. https://www.osti.gov/biblio/1068339

Wills, A.E. (2013). Towards a Density Functional Theory Exchange-Correlation Functional able to describe localization/delocalization [Conference]. https://www.osti.gov/biblio/1145194

Carpenter, J.H., Wills, A.E., Rider, W., Debusschere, B.J., Robinson, A.C., Drake, R.R., & Drake, R.R. (2013). Representation and Propagation of Uncertainty in Multiphase Tabular Equation-of-State Models [Presentation]. https://www.osti.gov/biblio/1657709

Moreland, K. (2013). Oh $#*@! Exascale!: The effect of emerging architectures on data analysis software (SOS 17 version) [Presentation]. https://www.osti.gov/biblio/1657710

Groth, K.M., Swiler, L.P., & Swiler, L.P. (2013). Use of limited data to construct Bayesian networks for probabilistic risk assessment. https://doi.org/10.2172/1095131

Ferreira, K.B. (2013). Checkpoint Compression - An Application Transparent Performance Optimization [Presentation]. https://www.osti.gov/biblio/1657711

Hammond, S., Rodrigues, A., Kelly, S.M., Vandyke, J.P., & Vandyke, J.P. (2013). SST and ExMatEx Update [Presentation]. https://www.osti.gov/biblio/1657712

Rider, W., Kamm, J., Witkowski, W., & Witkowski, W. (2013). Robust Verification Methods [Conference]. https://www.osti.gov/biblio/1069064

Thompson, A.P., Schultz, P.A., Swiler, L.P., Trott, C.R., Tucker, G.J., Foiles, S.M., & Foiles, S.M. (2013). Automated generation of quantum-accurate classical interatomic potentials for metals and semiconductors [Conference]. https://www.osti.gov/biblio/1069031

Brightwell, R.B. (2013). XPRESS Project Overview [Conference]. https://www.osti.gov/biblio/1145305

Moussa, J.E. (2013). Cubic-scaling algorithm and self-consistent mean field for the random-phase approximation with second-order screened exchange [Conference]. https://www.osti.gov/biblio/1145346

Bochev, P., Peterson, K., Gao, X., & Gao, X. (2013). Control Volume Finite Element Method for Drift-diffusion Equations on General Unstructured Grids [Conference]. https://www.osti.gov/biblio/1145245

Sterk, J.D., Blume-Kohout, R.J., Parekh, O., Maunz, P.L.W., Tigges, C.P., Blain, M., Colbaugh, R., Johnson, C.N., & Johnson, C.N. (2013). Quantum Graph Analysis with Trapped Yb Ion Qubits [Conference]. https://www.osti.gov/biblio/1145353

Jacobson, N.T., Witzel, W., Nielsen, E., Carroll, M.S., & Carroll, M.S. (2013). Dynamically corrected gates for singlet-triplet spin qubits with control-dependent errors [Presentation]. https://www.osti.gov/biblio/1658053

Witzel, W., Young, K.C., & Young, K.C. (2013). Spin-bath autocorrelation functions directly from quantum theory [Conference]. https://www.osti.gov/biblio/1145323

Lehoucq, R.B. (2013). Analysis of the volume-constrained peridynamic Navier equation of linear elasticity [Conference]. https://www.osti.gov/biblio/1145295

Lu, T., Bishop, N.C., Tracy, L.A., Blume-Kohout, R.J., Pluym, T., Wendt, J.R., Dominguez, J., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2013). Measurements of spin lifetime of an antimony-bound electron in silicon [Conference]. https://www.osti.gov/biblio/1145318

Prokopenko, A., Hu, J.J., Tuminaro, R.S., & Tuminaro, R.S. (2013). Energy Minimization in Parallel Setting [Conference]. https://www.osti.gov/biblio/1145360

Landahl, A.J. (2013). APS March Meeting: Accurate Z rotations with less magic [Conference]. https://www.osti.gov/biblio/1145317

Cadena, D.A. (2013). DRAFT: The Salishan Conference on High -Speed Computing at a glance [Presentation]. https://www.osti.gov/biblio/1658038

Carpenter, J.H., Wills, A.E., Rider, W., Debusschere, B.J., Robinson, A.C., Drake, R.R., & Drake, R.R. (2013). Representation and Propagation of Uncertainty for Tabular Multiphase Equation-of-State Models [Conference]. https://www.osti.gov/biblio/1145224

Oldfield, R., Rogers, D., Moreland, K., Fabian, N., & Fabian, N. (2013). Integrating Analysis and Computation: Experiences with In-Situ and In-Transit Approaches [Conference]. https://www.osti.gov/biblio/1095560

Magyar, R.J., Shulenburger, L., Desjarlais, M.P., & Desjarlais, M.P. (2013). Time-Dependent Density Functional Theory of Extreme Environments [Conference]. https://www.osti.gov/biblio/1116008

Lehoucq, R.B. (2013). Computing the exit-time for a finite-range symmetric jump process. SIAM journal of applied mathematics. https://www.osti.gov/biblio/1145219

Doerfler, D.W. (2013). Trinity and NERSC8 Technical Requirements Review [Presentation]. https://www.osti.gov/biblio/1658106

Barrett, R.F., Willenbring, J.M., Hammond, S., & Hammond, S. (2013). Mantevo Suite 1.0 [Presentation]. https://www.osti.gov/biblio/1658134

Schultz, P.A. (2013). Simple intrinsic defects in InAs :. https://doi.org/10.2172/1095951

Dewers, T., Swan, M.S., & Swan, M.S. (2013). Development and deployment of constitutive softening routines in Eulerian hydrocodes. https://doi.org/10.2172/1095954

Cyr, E.C., Shadid, J.N., Smith, T.M., Pawlowski, R., & Pawlowski, R. (2013). A comparison of adjoint and data-centric verification techniques. https://doi.org/10.2172/1095937

Ferreira, K.B., Pedretti, K., Levy, S.L.N., & Levy, S.L.N. (2013). Protect Yourself: Why Your OS Must Protect Against DRAM Failures [Conference]. https://www.osti.gov/biblio/1062878

Witzel, W., Young, K.C., & Young, K.C. (2013). Bath-specific dynamical decoupling in enriched Si [Presentation]. https://www.osti.gov/biblio/1649690

Landahl, A.J. (2013). U. Paris: Are the promises of adiabatic quantum computing real? [Conference]. https://www.osti.gov/biblio/1116129

Landahl, A.J. (2013). arXiv: Complex instruction set computing architecture for performing accurate quantum Z rotations with less magic. Proposed for publication in www.arXiv.org.. https://www.osti.gov/biblio/1062920

Trott, C.R., Thompson, A.P., & Thompson, A.P. (2013). Implementing Many-Body Potentials for Molecular Dynamics Simulations [Conference]. https://www.osti.gov/biblio/1062932

Moreland, K. (2013). Dax: Data Analysis at Extreme (Poster SDAV All Hands Meeting February 2013) [Presentation]. https://www.osti.gov/biblio/1648492

Oldfield, R. (2013). Scalability and Capability Improvements for In-Situ and In-Transit Analysis [Presentation]. https://www.osti.gov/biblio/1648495

Littlewood, D.J. (2013). Coupling Peridynamics and Classical Finite Elements [Conference]. https://www.osti.gov/biblio/1062793

Eldred, M., Domino, S.P., Barone, M., Jakeman, J.D., & Jakeman, J.D. (2013). Advances in UQ Algorithms for Wind Energy Applications [Conference]. https://www.osti.gov/biblio/1062946

Leung, V.J. (2013). Task mapping for non-contiguous allocations. https://doi.org/10.2172/1093699

Boman, E.G., Devine, K., Lehoucq, R.B., Slattengren, N., & Slattengren, N. (2013). Trilinos-based Software for Eigenanalysis of Graphs [Presentation]. https://www.osti.gov/biblio/1648496

Littlewood, D.J., Parks, M.L., Mitchell, J.A., Silling, S.A., & Silling, S.A. (2013). The Peridigm Framework for Peridynamic Simulations [Conference]. https://www.osti.gov/biblio/1062955

Thompson, A.P., Shan, T., & Shan, T. (2013). Development of a ReaxFF Reactive Force Field for Ammonium Nitrate and Application to Shock Hugoniots. Proposed for publication in Jounal of Physical Chemistry A.. https://www.osti.gov/biblio/1062966

Niederhaus, J.H.J., Robinson, A.C., & Robinson, A.C. (2013). New Benchmark Calculations for the ALEGRA-MHD Code [Conference]. https://www.osti.gov/biblio/1299035

Barrett, B., Barrett, R.F., Rodrigues, A., Lentine, A.L., Denton-Hill, K.M., & Denton-Hill, K.M. (2013). Extreme-scale Computing Grand Challenge (XGC) [Presentation]. https://www.osti.gov/biblio/1658028

Salinger, A.G., Tuminaro, R.S., & Tuminaro, R.S. (2013). A New Unstructured Variable-Resolution Finite Element Ice Sheet Stress-Velocity Solver within the MPAS/Trilinos FELIX Dycore of PISCEES [Conference]. https://www.osti.gov/biblio/1145231

Hart, W.E. (2013). Cybersecurity R&DOverview [Conference]. https://www.osti.gov/biblio/1116052

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2013). A Comparison of Compression and Increment-based Checkpoint Optimizations [Conference]. https://www.osti.gov/biblio/1063390

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2013). Accelerating Incremental Checkpointing for Extreme-Scale Computing. Proposed for publication in Future Generation Computer Systems.. https://www.osti.gov/biblio/1063314

Landahl, A.J. (2013). Accurate Quantum Z Rotations with Less Magic [Conference]. https://www.osti.gov/biblio/1063477

Berry, J., Phillips, C.A., Plimpton, S.J., & Plimpton, S.J. (2013). Maintaining connected components for infinite graph streams [Conference]. https://www.osti.gov/biblio/1063365

Levy, S.L.N., Ferreira, K.B., & Ferreira, K.B. (2013). Using Unreliable Virtual Hardware to Inject Errors in Extreme-Scale Systems [Conference]. https://www.osti.gov/biblio/1063319

Jakeman, J.D., Wildey, T., & Wildey, T. (2013). Quantifying Uncertainty using a-posteriori Enhanced Sparse Grid Approximations [Conference]. https://www.osti.gov/biblio/1063316