Publications

Biedermann, G., Johnson, C.N., Burns, G.R., Hamilton, T., Kemme, S.A., Jau, Y., Parazzoli, L.P., Hankin, A.M., Landahl, A.J., Schwindt, P., Mangan, M.A., & Mangan, M.A. (2013). Quantum information processing with Rydbergdressed atoms [Conference]. https://www.osti.gov/biblio/1314220

Blume-Kohout, R.J. (2013). Adaptive Gate Set Tomography [Conference]. https://www.osti.gov/biblio/1063405

Aimone, J.B., Vineyard, C.M., & Vineyard, C.M. (2013). How neurogenesis and the scale of the dentate gyrus affect the resolution of memories [Presentation]. https://www.osti.gov/biblio/1649929

Moreland, K. (2013). Dax: Data Analysis at Extreme (Slides SDAV All Hands Meeting February 2013) [Presentation]. https://www.osti.gov/biblio/1649930

Vaughan, C.T. (2013). Ensuring Continued Scalability of Mesh Based Hydrocodes [Conference]. https://www.osti.gov/biblio/1064348

Robbins, J., Voth, T.E., & Voth, T.E. (2013). The generalized finite element method applied to the dynamic response of heterogeneous media [Conference]. https://www.osti.gov/biblio/1064266

Schiek, R.L., Mei, T., Rajamanickam, S., Keiter, E., Warrender, C., Aimone, J.B., Thornquist, H., Russo, T.V., Verley, J.C., Crossno, P.J., & Crossno, P.J. (2013). Neuron Simulation and Analysis with Xyce [Conference]. https://www.osti.gov/biblio/1064135

Abbott, R.G., Forsythe, J.C., Haass, M.J., Silva, A.R., & Silva, A.R. (2013). MEASUREMENT AND TASK CORRELATES OF ADAPTIVE THINKING [Conference]. https://www.osti.gov/biblio/1064305

Tuminaro, R.S., Cyr, E.C., & Cyr, E.C. (2013). An Investigation of Multigrid Smoothers for Fully Implicit 2D Incompressible Resistive MHD [Conference]. https://www.osti.gov/biblio/1064306

Arunajatesan, S., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2013). Energy-Stable Galerkin Reduced Order Models for Prediction and Control of Fluid Systems [Conference]. https://www.osti.gov/biblio/1145319

Tuminaro, R.S., Boggs, P.T., & Boggs, P.T. (2013). Efficient structure-preserving model reduction for nonlinear mechanical systems with application to structural dynamics [Conference]. https://www.osti.gov/biblio/1145296

Aimone, J.B. (2013). Neuroscience to Applications - Computational Neuroscience at Sandia National Laboratories [Presentation]. https://www.osti.gov/biblio/1649979

Salinger, A.G., Perego, M., & Perego, M. (2013). FELIX: advances in modeling forward and inverse ice-sheet problems [Conference]. https://www.osti.gov/biblio/1115922

Cyr, E.C., Shadid, J.N., & Shadid, J.N. (2013). Error Estimates for Adjoint Inconsistent Discretization Methods [Conference]. https://www.osti.gov/biblio/1145344

Lin, P.T., Shadid, J.N., Cyr, E.C., & Cyr, E.C. (2013). Block-Oriented Preconditioners for the Solution of the Semiconductor Drift-Diffusion Equations [Conference]. https://www.osti.gov/biblio/1064337

Shadid, J.N., Pawlowski, R., & Pawlowski, R. (2013). Algebraic Flux Correction FEM for Convection Dominated Transport [Conference]. https://www.osti.gov/biblio/1145284

Hoemmen, M.F., Heroux, M.A., & Heroux, M.A. (2013). Next-generation programming models: What we need and do not need [Conference]. https://www.osti.gov/biblio/1064255

Red-Horse, J.R., Wildey, T., & Wildey, T. (2013). Stochastic Dimension Reduction of Multiphysics Systems through Measure Transformation [Conference]. https://www.osti.gov/biblio/1145287

Guba, O., Overfelt, J.R., Taylor, M.A., & Taylor, M.A. (2013). Advection Scheme in CAM-SE Focus on Stabillization [Conference]. https://www.osti.gov/biblio/1145308

Landahl, A.J. (2013). HRL Seminar: The AQUARIUS Grand Challenge Project [Presentation]. https://www.osti.gov/biblio/1650321

Romero, V., Swiler, L.P., Urbina, A., & Urbina, A. (2013). A Comparison of Methods for Representing and Aggregating Uncertainties involving Sparsely Sampled Random Variables ? More Results [Conference]. https://www.osti.gov/biblio/1064330

Levy, S.L.N. (2013). Exploiting Content Similarity to Improve Memory Performance in Large-Scale High-Performance Computing Systems [Conference]. https://www.osti.gov/biblio/1064175

Rajamanickam, S. (2013). Multithreaded Sparse Kernels for Solution of Sparse Linear Systems [Conference]. https://www.osti.gov/biblio/1115954

Hammond, S., Rajamanickam, S., Ang, J.A., Barrett, R.F., Doerfler, D.W., Heroux, M.A., Laros, J.H., & Laros, J.H. (2013). Experiences with Xeon Phi [Conference]. https://www.osti.gov/biblio/1067550

Blume-Kohout, R.J., Sarovar, M., & Sarovar, M. (2013). Error correction in adiabatic quantum computation [Conference]. https://www.osti.gov/biblio/1145272

Moreland, K. (2013). A survey of visualization pipelines [Presentation]. IEEE Transactions on Visualization and Computer Graphics. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84872300513&origin=inward

Scovazzi, G., Collis, S.S., Gerstenberger, A., & Gerstenberger, A. (2013). A discontinuous Galerkin method for gravity-driven viscous fingering instabilities in porous media. Journal of Computational Physics, 233(C), pp. 373-399. https://doi.org/10.1016/j.jcp.2012.09.003

Hammond, S. (2013). Finding an On--Ramp to the Exascale Highway [Presentation]. https://www.osti.gov/biblio/1658148

Ferreira, K.B., Thompson, A.P., Trott, C.R., & Trott, C.R. (2013). Evaluating the Feasibility of Using Memory Content Similarity to Improve System Resilience [Conference]. https://www.osti.gov/biblio/1072492

Ferreira, K.B., Thompson, A.P., Trott, C.R., Levy, S.L.N., & Levy, S.L.N. (2013). An examination of content similarity within the memory of HPC applications. https://doi.org/10.2172/1088105

Guba, O., Taylor, M.A., & Taylor, M.A. (2013). Optimal limiters for the spectral element method. Proposed for publication in Journal of Computational Physics.. https://www.osti.gov/biblio/1072624

Barrett, R.F., Vaughan, C.T., Hammond, S., & Hammond, S. (2013). Application Explorations for Future Interconnects [Conference]. https://www.osti.gov/biblio/1116062

Parks, M.L., Littlewood, D.J., Mitchell, J.A., Silling, S.A., & Silling, S.A. (2013). Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1649818

Jakeman, J.D. (2013). Constructing Polynomial Chaos Expansions via Compressed Sensing and Cross Validation [Conference]. https://www.osti.gov/biblio/1063474

Gaudioso, J.M. (2013). Infectious Diseases: where's the line between public health and security? [Conference]. https://www.osti.gov/biblio/1116069

Lehoucq, R.B. (2013). The Peridynamic Nonlocal Continuum Theory [Conference]. https://www.osti.gov/biblio/1063509

Nicholson, B.L. (2013). Differential Algebraic Equations: Developing a New Package in Coopr [Conference]. https://www.osti.gov/biblio/1063527

Hart, W.E. (2013). The Role of Objective Function Sense in Approximately Optimizing Sensor Placement for Municipal Water Distribution Systems [Conference]. https://www.osti.gov/biblio/1116120

Carr, R.D. (2013). Strengthening Maxcut Relaxations [Conference]. https://www.osti.gov/biblio/1063578

Barrett, R.F., Laros, J.H., Hammond, S., & Hammond, S. (2013). Using Miniapplications in a Mantevo Framework for Optimizing Sandia's SPARC CFD Code on Multi-Core Many-Core and GPU-Accelerated Platforms [Conference]. https://www.osti.gov/biblio/1072578

Pawlowski, R. (2013). THE DATA TRANSFER KIT: A GEOMETRIC RENDEZVOUS-BASED TOOL FOR MULTIPHYSICS DATA TRANSFER [Conference]. https://www.osti.gov/biblio/1063435

Moreland, K. (2013). Oh %24%23*%40! Exascale! The Effect of Emerging Architectures on Scientific Discovery [Conference]. https://www.osti.gov/biblio/1063446

Jau, Y., Landahl, A.J., & Landahl, A.J. (2013). Adiabatic quantum computation with Rydberg-dressed atoms. Proposed for publication in Physical Review Letters.. https://www.osti.gov/biblio/1072612

Swiler, L.P. (2013). Calibration of a Fuel Relocation Model in BISON [Conference]. https://www.osti.gov/biblio/1116075

Pedretti, K., Vaughan, C.T., Hemmert, K.S., Barrett, R.F., & Barrett, R.F. (2013). Using the Cray Gemini Performance Counters [Conference]. https://www.osti.gov/biblio/1063364

Lu, T., Cederberg, J.G., Lilly, M.P., Carroll, M.S., Bishop, N.C., Tracy, L.A., Blume-Kohout, R.J., Pluym, T., Wendt, J.R., Dominguez, J., Means, J., Kotula, P.G., & Kotula, P.G. (2013). Silicon-Based Low-Dimensional Electronic Devices: Fabrication Characterization and their Physical Behavior in the Quantum Regime [Conference]. https://www.osti.gov/biblio/1072630

Landahl, A.J. (2013). Accurate Quantum Z Rotations with Less Magic [Conference]. https://www.osti.gov/biblio/1063485

Blume-Kohout, R.J. (2013). Copy of The power of null-space sampling: Quadratic speedups for quantum estimation [Presentation]. https://www.osti.gov/biblio/1649851

Shelton, T.R., Thomas, J.D., Littlewood, D.J., & Littlewood, D.J. (2013). Global Estimation of the Critical Time Step for Peridynamic Models [Conference]. https://www.osti.gov/biblio/1063336

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2013). A GPU-based Checkpoint Compression Study Size Does Matter -- More Than Speed Anyway [Conference]. https://www.osti.gov/biblio/1063556

Wheeler, K.B. (2013). Qthreads Briefing for AMD [Presentation]. https://www.osti.gov/biblio/1649839

Swiler, L.P. (2013). Uncertainty Quantification: UQ Methods DAKOTA Nuclear Energy Applications [Conference]. https://www.osti.gov/biblio/1063324

Moreland, K. (2013). Optimizing Threshold for Extreme Scale Analysis (poster) [Presentation]. https://www.osti.gov/biblio/1649846

Torczynski, J.R., Shelden, B., Romero, L., & Romero, L. (2013). BEHAVIOR OF LEVITATED BUBBLES UNDER VIBRATION [Conference]. https://www.osti.gov/biblio/1072509

Siirola, J.D., Watson, J., & Watson, J. (2013). Progressive Hedging for Computationally Tractable Security-Constrained Unit Commitment [Conference]. https://www.osti.gov/biblio/1063596

Wheeler, K.B., Stark, D., & Stark, D. (2013). A Comparative Analysis of Modern Task-Parallel Runtimes [Conference]. https://www.osti.gov/biblio/1063455

Phipps, E.T., Wildey, T., & Wildey, T. (2013). Efficient uncertainty propagation for network multiphysics systems. Proposed for publication in International Journal for Numerical Methods in Engineering.. https://www.osti.gov/biblio/1063360

Love, E., Robinson, A.C., & Robinson, A.C. (2013). Accurate Remapping of the Material State in Dynamic Hyperelasticity [Conference]. https://www.osti.gov/biblio/1072692

Boman, E.G., Devine, K., Lehoucq, R.B., Slattengren, N., & Slattengren, N. (2013). Efficient Computation of Eigenpairs for Large Scale-free Graphs [Conference]. https://www.osti.gov/biblio/1095526

Leung, V.J. (2013). Task Mapping for Non-contiguous Allocations [Conference]. https://www.osti.gov/biblio/1063331

Tuminaro, R.S., Cyr, E.C., & Cyr, E.C. (2013). MULTIGRID SMOOTHERS FOR MAGNETOHYDRODYNAMICS [Conference]. https://www.osti.gov/biblio/1063505

Olivier, S.L. (2013). Parallel Scientific Computing at the DOE National Laboratories: Successes and Challenges [Presentation]. https://www.osti.gov/biblio/1649876

Aimone, J.B. (2013). A Hypothesis for Temporal Coding of Young and Mature Granule Cells. Proposed for publication in Frontiers in Neurogenesis.. https://www.osti.gov/biblio/1063462

Lehoucq, R.B. (2013). Analysis and approximation of nonlocal diffusion problems with volume constraints [Conference]. https://www.osti.gov/biblio/1063402

Silling, S.A. (2013). Multiscale Modeling of Brittle Fracture with Peridynamics [Conference]. https://www.osti.gov/biblio/1063611

Phipps, E.T., Edwards, H.C., Hu, J.J., Ostien, J.T., & Ostien, J.T. (2013). Exploring Emerging Manycore Architectures for Uncertainty Quantification Through Embedded Stochastic Galerkin Methods. Proposed for publication in International Journal of Computer Mathematics.. https://www.osti.gov/biblio/1063466

Muller, R.P., Tracy, L.A., Nguyen, K., Ten Eyck, G.A., Lilly, M.P., Carroll, M.S., Nielsen, E., Gao, X., Young, R.W., Salinger, A.G., Tezaur, I.K., Bishop, N.C., Carr, S.M., Lu, T., & Lu, T. (2013). The QCAD Framework for Quantum Device Modeling [Conference]. https://www.osti.gov/biblio/1063472

Brightwell, R.B. (2013). Addressing the System Software Challenges for Converged Simulation and Analysis on Extreme-Scale Systems [Conference]. https://www.osti.gov/biblio/1063543

Overfelt, J.R. (2013). A Variable Resolution Spectral Element Dynamical Core in the Community Atmosphere Model. Proposed for publication in Monthly Weather Review.. https://www.osti.gov/biblio/1072440

McLendon, W., Brost, R., & Brost, R. (2013). LDRD final report :. https://doi.org/10.2172/1088081

Aimone, J.B. (2013). Perspectives for computational modeling of cell replacement for neurological disorders. Frontiers in Computational Neuroscience, 7(150). https://doi.org/10.3389/fncom.2013.00150

Barrett, B., Brightwell, R.B., Hammond, S., Hemmert, K.S., & Hemmert, K.S. (2013). The impact of hybrid-core processors on MPI message rate [Conference]. ACM International Conference Proceeding Series. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84886283317&origin=inward

Edwards, H.C., Trott, C.R., & Trott, C.R. (2013). Kokkos: Enabling performance portability across manycore architectures [Conference]. Proceedings - 2013 Extreme Scaling Workshop, XSW 2013. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84901060107&origin=inward

Boman, E.G., Devine, K., Rajamanickam, S., & Rajamanickam, S. (2013). Scalable matrix computations on large scale-free graphs using 2D graph partitioning [Conference]. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. https://doi.org/10.1145/2503210.2503293

Nielsen, E., Rahman, R., Muller, R.P., & Muller, R.P. (2012). A many-electron tight binding method for the analysis of quantum dot systems. Journal of Applied Physics, 112(11), pp. 1-8. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84871213093&origin=inward

Groth, K.M., Swiler, L.P., & Swiler, L.P. (2012). Use of a SPAR-H bayesian network for predicting human error probabilities with missing observations [Conference]. 11th International Probabilistic Safety Assessment and Management Conference and the Annual European Safety and Reliability Conference 2012, PSAM11 ESREL 2012. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84873186773&origin=inward

Rajamanickam, S., Devine, K., & Devine, K. (2012). Multi-jagged: A Scalable Multi-section based Spatial Partitioning Algorithm [Conference]. https://www.osti.gov/biblio/1063476

Barrett, B. (2012). Open MPI Data Transfer [Presentation]. https://www.osti.gov/biblio/1649706

Lu, T., Cederberg, J.G., Lilly, M.P., Carroll, M.S., Bishop, N.C., Tracy, L.A., Blume-Kohout, R.J., Pluym, T., Wendt, J.R., Dominguez, J., Means, J., Kotula, P.G., & Kotula, P.G. (2012). Silicon-Based Low-Dimensional Electronic Devices: Fabrication Characterization and their Physical Behavior in the Quantum Regime [Conference]. https://www.osti.gov/biblio/1294504

Guba, O. (2012). On Well-Posedness of the Viscous-Plastic Sea-Ice Model. Proposed for publication in Journal of Physical Oceanography.. https://www.osti.gov/biblio/1072562

Wills, A.E. (2012). Improving the Predictive Power of Calculations for the Warm Dense Matter Region [Conference]. https://www.osti.gov/biblio/1063597

Rao, R.R., O'Hern, T.J., Domino, S.P., Wyatt, N.B., Tikare, V., Erickson, L., Shelden, B., Brotherton, C.M., Cipiti, B.B., Pawlowski, R., Noble, D.R., Jove-Colon, C.F., Moffat, H.K., Roberts, C., Nemer, M., & Nemer, M. (2012). Multiscale Modelling of Nuclear Waste Reprocessing [Presentation]. https://www.osti.gov/biblio/1649756

Anderson, H., Helms, J., Rohrer, B.R., Wheeler, J.W., Larson, K., & Larson, K. (2012). Sparse Imaging for Fast Electron Microscopy [Conference]. https://www.osti.gov/biblio/1063299

Moreland, K., Rogers, D., Fabian, N., Oldfield, R., & Oldfield, R. (2012). CSSE L2 Milestone - Data Co-Processing for Extreme Scale Analysis - Midterm Review [Presentation]. https://www.osti.gov/biblio/1649753

Moreland, K. (2012). Research Agenda for Visualization at Exascale - 2 [Presentation]. https://www.osti.gov/biblio/1649755

Rodrigues, A., Hsieh, M.N., & Hsieh, M.N. (2012). SST Overview [Conference]. https://www.osti.gov/biblio/1063326

Trott, C.R. (2012). miniMD_postdoc_poster [Presentation]. https://www.osti.gov/biblio/1649761

Wheeler, K.B., Stark, D., & Stark, D. (2012). A comparative critical analysis of modern task-parallel runtimes. https://doi.org/10.2172/1088054

Rodrigues, A., Hemmert, K.S., Barrett, B., Oldfield, R., & Oldfield, R. (2012). The Structural Simulation Toolkit. Proposed for publication in SIGMETRICS Performance Evaluation Review.. https://www.osti.gov/biblio/1063445

Schiek, R.L., Thornquist, H., Warrender, C., Mei, T., Teeter, C.M., Aimone, J.B., & Aimone, J.B. (2012). Simulating neural systems with Xyce. https://doi.org/10.2172/1096952

Moreland, K. (2012). The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures [Conference]. https://www.osti.gov/biblio/1063391

Salinger, A.G. (2012). An Efficient Parallel Solution to the Wigner-Poisson Equation [Conference]. https://www.osti.gov/biblio/1063443

Trott, C.R. (2012). Exploring the Future of High Performance Computing with Proxy-Apps [Presentation]. https://www.osti.gov/biblio/1658146

Lin, P.T. (2012). Next Generation Solver Stack for the Simulation of the Abnormal Thermal Fire Environment for Stockpile Stewardship [Presentation]. https://www.osti.gov/biblio/1649794

Moreland, K. (2012). Enabling Production-Quality Scientific-Discovery Tools with Data and Execution Models [Presentation]. https://www.osti.gov/biblio/1649795

Hammond, S., Laros, J.H., & Laros, J.H. (2012). Using Miniapplications in a Mantevo Framework for Optimizing Sandia's SPARC CFD Code on Multi-Core Many-Core and GPU-Accelerated Compute Platforms [Conference]. https://www.osti.gov/biblio/1072648

Lin, P.T. (2012). Simulations of the Effect of Neutrons on Stockpile Transistors [Presentation]. https://www.osti.gov/biblio/1649799

Lu, T., Bishop, N.C., Tracy, L.A., Blume-Kohout, R.J., Pluym, T., Wendt, J.R., Dominguez, J., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2012). Measurements of Spin Life Time of an Antimony-Bound Electron in Silicon [Conference]. https://www.osti.gov/biblio/1072652

Lu, T., Cederberg, J.G., Lilly, M.P., Carroll, M.S., Bishop, N.C., Tracy, L.A., Blume-Kohout, R.J., Pluym, T., Wendt, J.R., Dominguez, J., Means, J., Kotula, P.G., & Kotula, P.G. (2012). Silicon-Based Low-Dimensional Electronic Devices: Fabrication Characterization and their Physical Behavior in the Quantum Regime [Conference]. https://www.osti.gov/biblio/1072564

Ang, J.A., Barrett, R.F., Hammond, S., Rodrigues, A., & Rodrigues, A. (2012). Emerging HPC Systems and Next Generation Engineering Analysis Applications [Presentation]. https://www.osti.gov/biblio/1649801