Publications

Bartlett, R. (2006). Automatic Differentiation of C++ Codes for Large-Scale Scientific Computing [Conference]. https://www.osti.gov/biblio/1264017

Feddema, J.T., Bennett, P.C., Anderson, R.J., Dixon, K.R., & Dixon, K.R. (2006). Sandia's Unmanned Ground Vehicles Mobile Manipulation and Cooperative Control [Presentation]. https://www.osti.gov/biblio/1692368

Riesen, R. (2006). Supercomputing System Design Through Simulation [Presentation]. https://www.osti.gov/biblio/1729775

Boman, E.G., Devine, K., & Devine, K. (2006). Zoltan 2.0 Release announcement [Presentation]. https://www.osti.gov/biblio/1727319

Leung, V.J. (2006). Fairness of Job Scheduling in Cplant [Presentation]. https://www.osti.gov/biblio/1727324

Silling, S.A. (2006). Peridynamic Modeling of Impact and Penetration [Presentation]. https://www.osti.gov/biblio/1727325

Heroux, M.A. (2006). Trilinos Brief Overview [Presentation]. https://www.osti.gov/biblio/1727326

Rintoul, M.D. (2006). Algorithms and Enabling Technologies [Presentation]. https://www.osti.gov/biblio/1729777

Gay, D.M., Phipps, E.T., & Phipps, E.T. (2006). Automatic Differentiation For enabling Predictive Simulations [Presentation]. https://www.osti.gov/biblio/1729778

Silling, S.A. (2006). Peridynamics Capabilities and Applications [Presentation]. https://www.osti.gov/biblio/1729779

Trucano, T.G. (2006). Current Emphases and Future Themes for ASC Verification & Validation [Presentation]. https://www.osti.gov/biblio/1729780

Rintoul, M.D. (2006). Overview of Algorithms and Enabling Technologies [Presentation]. https://www.osti.gov/biblio/1729781

Crozier, P., Plimpton, S.J., Stevens, M.J., Lehoucq, R.B., & Lehoucq, R.B. (2006). Substructured Multibody Molecular Dynamics [Presentation]. https://www.osti.gov/biblio/1729782

Carr, R.D., Berry, J., Hart, W.E., Phillips, C.A., Watson, J., & Watson, J. (2006). Robust Sensor Placement for Realistic Surveillance Problems [Presentation]. https://www.osti.gov/biblio/1729764

Heroux, M.A. (2006). Solvers R&D: Algorithms to Z-Pinch [Presentation]. https://www.osti.gov/biblio/1729765

Camp, W.J., Womble, D.E., & Womble, D.E. (2006). Computation Computers Information & Mathematics - Center 1400 [Presentation]. https://www.osti.gov/biblio/1729766

Phelps, S., Heroux, M.A., Wen, Z., & Wen, Z. (2006). An Evolutionary Path towards Virtual Shared Memory with Random Access [Conference]. https://www.osti.gov/biblio/1238485

Underwood, K.D., Berry, J., Hendrickson, B.A., & Hendrickson, B.A. (2006). Scalability of Graph Algorithms on Eldorado [Conference]. https://www.osti.gov/biblio/1319896

Hughes, T.J.R., Scovazzi, G., Bochev, P., Buffa, A., & Buffa, A. (2006). A multiscale discontinuous Galerkin method with the computational structure of a continuous Galerkin method. Computer Methods in Applied Mechanics and Engineering, 195(19-22), pp. 2761-2787. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33644584742&origin=inward

Swiler, L.P. (2006). Bayesian methods in engineering design problems. https://doi.org/10.2172/883142

Riesen, R., Brightwell, R.B., Pedretti, K.T.T., & Pedretti, K.T.T. (2006). The portals 3.3 message passing interface document revision 2.1. https://doi.org/10.2172/882925

Swiler, L.P. (2006). Verification of LHS distributions. https://doi.org/10.2172/882044

Howle, V.E., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2006). Least squares preconditioners for stabilized discretizations of the Navier-Stokes equations. Proposed for publication in the SIAM Journal on Scientific Computing.. https://www.osti.gov/biblio/897133

Kolda, T.G., Dunlavy, D.M., Kegelmeyer, W.P., & Kegelmeyer, W.P. (2006). Multilinear operators for higher-order decompositions. https://doi.org/10.2172/923081

Taylor, M.A., Strickland, J., & Strickland, J. (2006). 1433 News Note: POP Science Runs [Presentation]. https://www.osti.gov/biblio/1727344

Gee, M.W., Tuminaro, R.S., & Tuminaro, R.S. (2006). Nonlinear algebraic multigrid for constrained solid mechanics problems using Trilinos. https://doi.org/10.2172/883128

Modine, N.A., Wright, A.F., Muller, R.P., Sears, M.P., Wills, A.E., Desjarlais, M.P., & Desjarlais, M.P. (2006). Iterative optimized effective potential and exact exchange calculations at finite temperature [Conference]. https://www.osti.gov/biblio/957289

Carpenter, J.H., Coombs, J., Kearney, S.P., Staten, M., & Staten, M. (2006). Next generation of scientists workshop [Conference]. https://www.osti.gov/biblio/889943

Carr, R.D., Greenberg, H.J., Hart, W.E., Konjevod, G., Lauer, E., Lin, H., Morrison, T., Phillips, C.A., & Phillips, C.A. (2006). Robust optimization of contaminant sensor placement for community water systems. Mathematical Programming, 107(1-2), pp. 337-356. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33644674503&origin=inward

Dunlavy, D.M., Kolda, T.G., Kegelmeyer, W.P., & Kegelmeyer, W.P. (2006). Multilinear algebra for analyzing data with multiple linkages [Conference]. https://www.osti.gov/biblio/1264583

Strickland, J. (2006). GNEP Simulation Laboratory: GNEP Enterprise Model (GEM) [Presentation]. https://www.osti.gov/biblio/1727352

Scovazzi, G., Love, E., & Love, E. (2006). A multi-scale Q1/P0 approach to langrangian shock hydrodynamics. https://doi.org/10.2172/902215

Pebay, P., Knupp, P., Thompson, D., & Thompson, D. (2006). The verdict geometric quality library. https://doi.org/10.2172/901967

Edwards, A.H., Pineda, A.C., Schultz, P.A., Martin, M.G., Thompson, A.P., Hjalmarson, H.P., Umrigar, C.J., & Umrigar, C.J. (2006). Electronic structure of intrinsic defects in crystalline germanium telluride. Physical Review B - Condensed Matter and Materials Physics, 73(4). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33144464043&origin=inward

Gaudioso, J.M. (2006). A survey of Asian life scientists :the state of biosciences, laboratory biosecurity, and biosafety in Asia. https://doi.org/10.2172/878590

Scovazzi, G., Bochev, P., Collis, S.S., & Collis, S.S. (2006). The variational multiscale framework for discontinuous Galerkin methods [Conference]. https://www.osti.gov/biblio/943895

Diegert, C. (2006). Technical assessment of Navitar Zoom 6000 optic and Sony HDC-X310 camera for MEMS presentations and training. https://doi.org/10.2172/878584

Fossum, A., Brannon, R., & Brannon, R. (2006). On a viscoplastic model for rocks with mechanism-dependent characteristic times. Proposed for publication in Acta Geotechnica.. https://www.osti.gov/biblio/952135

Brannon, R., Strack, O.E., Fossum, A., & Fossum, A. (2006). Size-Dependent Softening in Structural Ceramics Including Correlations with Mesoscale Interferometry in Impact Experiments [Conference]. https://www.osti.gov/biblio/1141627

Heffelfinger, G.S., Martino, A., Rintoul, M.D., & Rintoul, M.D. (2006). Genomes to Life Project Quarterly Report April 2005. https://doi.org/10.2172/1143350

Gaudioso, J.M. (2006). A rational approach to biosafety and biosecurity [Conference]. https://www.osti.gov/biblio/884720

Frischknecht, A.L., Frink, L.J., & Frink, L.J. (2006). Effects of alcohols on lipid bilayers from molecular theory [Conference]. https://www.osti.gov/biblio/947253

Underwood, K.D. (2006). Open source high performance floating-point modules [Conference]. https://www.osti.gov/biblio/943916

Leininger, M. (2006). HPC InfiniBand requirements : lessons learned from five years of building InfiniBand clusters [Conference]. https://www.osti.gov/biblio/943898

Lauer, E., Phillips, C.A., & Phillips, C.A. (2006). The complex of sensor placement in municipal water networks [Conference]. https://www.osti.gov/biblio/943953

Dunlavy, D.M., Salinger, A.G., & Salinger, A.G. (2006). Preconditioners for the space-time solution of large-scale PDE applications [Conference]. https://www.osti.gov/biblio/943865

Spotz, W.F. (2006). PyTrilinos : a parallel python interface to Trilinos [Conference]. https://www.osti.gov/biblio/943931

Devine, K., Boman, E.G., Heaphy, R.T., & Heaphy, R.T. (2006). Parallel hypergraph partitioning for irregular problems [Conference]. https://www.osti.gov/biblio/943935

Curro, J., Budzien, J., Grest, G.S., Thompson, A.P., & Thompson, A.P. (2006). MD simulations of chemically reacting networks : analysis of permanent set [Conference]. https://www.osti.gov/biblio/943880

Gaudioso, J.M. (2006). Biosciences Laboratory Biosecurity and Biosafety in Asia [Conference]. https://www.osti.gov/biblio/1264047

Debenedictis, E. (2006). Petaflops, exaflops, and zettaflops for climate modeling [Conference]. https://www.osti.gov/biblio/943866

Dunlavy, D.M., Phipps, E.T., & Phipps, E.T. (2006). Parallel space-time solutions of PDE applications [Conference]. https://www.osti.gov/biblio/943870

Underwood, K.D. (2006). Multi-core processors : coping with the inevitable [Conference]. https://www.osti.gov/biblio/944384

Brightwell, R.B., Goudy, S.P., Rodrigues, A., Underwood, K.D., & Underwood, K.D. (2006). Implications of application usage characteristics for collective communication offload. International Journal of High Performance Computing and Networking, 4(3-4), pp. 104-116. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=50649103668&origin=inward

Trucano, T.G. (2006). ALEGRA-HEDP validation strategy. https://doi.org/10.2172/876526

Budzien, J., Lo, C.S., Curro, J., Thompson, A.P., Grest, G.S., & Grest, G.S. (2006). Constitutive models for rubber networks undergoing simultaneous crosslinking and scission. https://doi.org/10.2172/877144

van Bloemen Waanders, B.G. (2006). Algorithm and simulation development in support of response strategies for contamination events in air and water systems. https://doi.org/10.2172/882050

Laros, J.H. (2006). A software and hardware architecture for a modular, portable, extensible reliability availability and serviceability system [Conference]. https://www.osti.gov/biblio/900019

Hooper, R., Smith, T.M., Ober, C.C., & Ober, C.C. (2006). Enabling fluid-structural strong thermal coupling within a multi-physics environment [Conference]. Collection of Technical Papers - 44th AIAA Aerospace Sciences Meeting. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=34250852949&origin=inward

Hooper, R., Ober, C.C., Lorber, A., & Lorber, A. (2006). Intelligent nonlinear solvers for computational fluid dynamics [Conference]. https://www.osti.gov/biblio/900032

Silling, S.A. (2006). Peridynamic analysis of damage and failure in composites [Conference]. https://www.osti.gov/biblio/900030

Hendrickson, B.A. (2006). Latent semantic analysis and fiedler embeddings. Proposed for publication Linear Algebra and Its Applications.. https://www.osti.gov/biblio/900034

Silling, S.A. (2006). Peridynamic modeling of fracture, impact, and penetration [Conference]. https://www.osti.gov/biblio/900411

Davidson, G.S. (2006). Analysis of type IV collagen gene expression in autosomal recessive and X-linked forms of alport syndrome in the english cocker spaniel and mixed breed dog. Proposed for publication in Gene.. https://www.osti.gov/biblio/900021

Hooper, R., Ober, C.C., Lorber, A., & Lorber, A. (2006). Intelligent nonlinear solvers for computational fluid dynamics [Conference]. https://www.osti.gov/biblio/902575

Hooper, R., Ober, C.C., & Ober, C.C. (2006). Enabling fluid-structural strong thermal coupling within a multi-physics environment [Conference]. https://www.osti.gov/biblio/902570

Shuttleworth, R.R. (2006). A comparison of parallel block multi-level preconditions for the incompressible Navier-Stokes equations [Conference]. https://www.osti.gov/biblio/891699

Abbott, R.G. (2006). Automated expert modeling for automated student evaluation [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33746359663&origin=inward

Phelps, S., Heroux, M.A., Wen, Z., & Wen, Z. (2006). BEC :a virtual shared memory parallel programming environment. https://doi.org/10.2172/882923

Phelps, S., Wen, Z., & Wen, Z. (2006). Some language issues in high performance computing: translation from fine-grained parallelism to coarse-grained parallelism. https://doi.org/10.2172/882922

Swiler, L.P., Hough, P.D., & Hough, P.D. (2006). Gaussian processes in trust-region optimization methods [Conference]. https://www.osti.gov/biblio/900383

Tautges, T.J. (2006). Parallel hex mesh generation: an overview [Conference]. https://www.osti.gov/biblio/900421

Moreland, K. (2006). Large data visualization using client/server architecture in the paraview framework [Conference]. https://www.osti.gov/biblio/900419

Parks, M.L., De Sturler, E., MacKey, G.E., Johnson, D.D., Maiti, S., & Maiti, S. (2006). Recycling Krylov subspaces for sequences of linear systems. SIAM Journal on Scientific Computing, 28(5), pp. 1651-1674. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=34249313627&origin=inward

Bartlett, R., Gay, D.M., Phipps, E.T., & Phipps, E.T. (2006). Automatic differentiation of C++ codes for large-scale scientific computing [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33746628117&origin=inward

Keiter, E., Hoekstra, R.J., Coffey, T.S., Heroux, M.A., Pawlowski, R., Hutchinson, S.A., & Hutchinson, S.A. (2006). Circuit simulation: unique solution requirements [Conference]. https://www.osti.gov/biblio/943913

Giunta, A.A., Swiler, L.P., Brown, S.L., Eldred, M., Richards, M.D., Cyr, E.C., & Cyr, E.C. (2006). The surfpack software library for surrogate modeling of sparse irregularly spaced multidimensional data [Conference]. Collection of Technical Papers - 11th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33846476203&origin=inward

Doerfler, D.W., Brightwell, R.B., & Brightwell, R.B. (2006). Measuring MPI send and receive overhead and application availability in high performance network interfaces [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33750243964&origin=inward

Clay, R.L., Marburger, S.J., Shneider, M., Trucano, T.G., & Trucano, T.G. (2006). Modeling and simulation technology readiness levels. https://doi.org/10.2172/901709

Bishop, J.E., Voth, T.E., Brown, K.H., & Brown, K.H. (2005). Semi-infinite target penetration by ogive-nose penetrators: ALEGRA/SHISM code predictions for ideal and non-ideal impacts [Conference]. American Society of Mechanical Engineers, Pressure Vessels and Piping Division (Publication) PVP. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=29144498336&origin=inward

Berg, V.S., Stofleth, J.H., Preece, D.S., Risenmay, M., & Risenmay, M. (2005). Kevlar and Carbon Composite body armor - Analysis and testing [Conference]. American Society of Mechanical Engineers, Pressure Vessels and Piping Division (Publication) PVP. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=29144446233&origin=inward

Rodrigues, A., Murphy, R., Brightwell, R.B., Underwood, K.D., & Underwood, K.D. (2005). Enhancing NIC performance for MPI using processing-in-memory [Conference]. Proceedings - 19th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2005. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33746293614&origin=inward

Salinger, A.G. (2005). Computational stability study of 3D flow in a differentially heated 8:1:1 cavity [Conference]. 3rd M.I.T. Conference on Computational Fluid and Solid Mechanics. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=80053447373&origin=inward

Debenedictis, E. (2005). Reversible logic for supercomputing [Conference]. 2005 Computing Frontiers Conference. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33644640628&origin=inward

Lawry, W.F., Underwood, K.D., & Underwood, K.D. (2005). Considering the relative importance of network performance and network features [Conference]. Proceedings of the International Conference on Parallel Processing. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33745161532&origin=inward

Hemmert, K.S., Underwood, K.D., & Underwood, K.D. (2005). An analysis of the double-precision floating-point FFT on FPGAs [Conference]. Proceedings - 13th Annual IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2005. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33746151233&origin=inward

Giunta, A.A., Eldred, M., Swiler, L.P., Trucano, T.G., & Trucano, T.G. (2005). Perspectives on optimization under uncertainty: Algorithms and applications [Conference]. https://www.osti.gov/biblio/947287

Haselman, M., Beauchamp, M., Wood, A., Hauck, S., Underwood, K.D., Hemmert, K.S., & Hemmert, K.S. (2005). A comparison of floating point and logarithmic number systems for FPGAs [Conference]. Proceedings - 13th Annual IEEE Symposium on Field-Programmable Custom Computing Machines, FCCM 2005. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33746154954&origin=inward

Van Bloemen Waanders, B., Hammond, G., Shadid, J.N., Collis, S., Murray, R., & Murray, R. (2005). A comparison of Navier Stokes and network models to predict chemical transport in municipal water distribution systems [Conference]. World Water Congress 2005: Impacts of Global Climate Change - Proceedings of the 2005 World Water and Environmental Resources Congress. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=37249000433&origin=inward

Thompson, A.P. (2005). Molecular simulations of beta-amyloid protein near hydrated lipids (PECASE). https://doi.org/10.2172/876519

Phipps, E.T., Gay, D.M., & Gay, D.M. (2005). New Automatic Differentiation Tools Expedite Code Development and Enable New Design Algorithms [Presentation]. https://www.osti.gov/biblio/1727365

Romero, V., Swiler, L.P., & Swiler, L.P. (2005). Error Estimation Approaches for Progressive Response Surfaces- More Results [Conference]. https://www.osti.gov/biblio/1465858

Gaudioso, J.M. (2005). Laboratory Biosecurity and Biosafety in the Middle East [Conference]. https://www.osti.gov/biblio/1465567

Summers, R.M. (2005). Advanced Modeling and Simulation for Fluid Flow and Heat & Mass Transfer Applications [Conference]. https://www.osti.gov/biblio/1465570

Phipps, E.T., Salinger, A.G., Pawlowski, R., & Pawlowski, R. (2005). What's New in NOX...Plus New Techniques for Solving Large-Scale Steady-State and Transient Stability Analysis Problems with LOCA [Presentation]. https://www.osti.gov/biblio/1728470

Moreland, K. (2005). The ParaView Guide (2.4) Introduction to Parallel Computing and Visualization [Presentation]. https://www.osti.gov/biblio/1728471

Moreland, K. (2005). Copy of The ParaView Guide (2.4) Parallel ParaView [Presentation]. https://www.osti.gov/biblio/1728472

Rutherford, B., Swiler, L.P., Paez, T.L., Urbina, A., & Urbina, A. (2005). Response surface (Meta-model) methods and applications [Conference]. https://www.osti.gov/biblio/882055

Debenedictis, E. (2005). Quantum Programming for Classical Programmers [Presentation]. https://www.osti.gov/biblio/1728526

Leininger, M. (2005). Scalable InfiniBand Cluster Architectures [Presentation]. https://www.osti.gov/biblio/1728475