Publications

Cadena, D.A. (2007). The Salishan Conference on High-Speed Comuting April 23-26 2007 [Conference]. https://www.osti.gov/biblio/1137290

Moreland, K. (2007). Time Dependent Processing in a Parallel Pipeline Architecture [Conference]. https://www.osti.gov/biblio/1137251

Haaland, D.M., Sinclair, M.B., Jones, H.D.T., Timlin, J.A., Bachand, G.D., Sasaki, D.Y., Davidson, G.S., van Benthem, M.H., & van Benthem, M.H. (2007). 3D optical sectioning with a new hyperspectral confocal fluorescence imaging system. https://doi.org/10.2172/902877

Ang, J.A., Vaughan, C.T., Barnette, D.W., Benner, R.E., Doerfler, D.W., Ganti, A., Phelps, S., Rajan, M., Stevenson, J.O., Scott, R.T., & Scott, R.T. (2007). Supercomputer and cluster performance modeling and analysis efforts:2004-2006. https://doi.org/10.2172/903425

Devine, K. (2007). Sandia National Labs and Ohio State University Receive Best Algorithms Paper Award at IPDPS07 [Presentation]. https://www.osti.gov/biblio/1724468

Gaudioso, J.M. (2007). Biological WMD: The Threat from States [Presentation]. https://www.osti.gov/biblio/1724482

Gaudioso, J.M. (2007). Biological WMD: The Threat from Non-State Actors [Presentation]. https://www.osti.gov/biblio/1724483

Lehoucq, R.B. (2007). Discrete dynamical systems and preconditioned eigensolvers [Conference]. https://www.osti.gov/biblio/1266970

Doerfler, D.W. (2007). ERDC has chosen to purchase a second machine based on the Red Storm architecture [Presentation]. https://www.osti.gov/biblio/1724488

Shadid, J.N. (2007). FCT Algorithms for the Euler Equations on Overset Grids [Conference]. https://www.osti.gov/biblio/1267097

Dunlavy, D.M., Eldred, M., & Eldred, M. (2007). Formulations for Surrogate-Based Optimization Using Data Fit and Multifidelity Models [Conference]. https://www.osti.gov/biblio/1143351

Siefert, C., Bochev, P., Hu, J.J., Tuminaro, R.S., & Tuminaro, R.S. (2007). Algebraic Multigrid and Algebraic Reformulations of the Eddy Current Equations [Conference]. https://www.osti.gov/biblio/1143320

Oberkampf, W.L., Trucano, T.G., & Trucano, T.G. (2007). Verification and validation benchmarks. https://doi.org/10.2172/901974

Stewart, J. (2007). Stewart Grad Education Sessions [Conference]. https://www.osti.gov/biblio/1143354

Frischknecht, A.L., Frink, L.J., & Frink, L.J. (2007). Effects of alcohols and pore-forming peptides on lipid bilayers [Conference]. https://www.osti.gov/biblio/1143402

Moreland, K. (2007). IUSV Kick-off Slides [Presentation]. https://www.osti.gov/biblio/1724412

Edwards, H.C. (2007). Integrating Modeling and Simulation Components within the SIERRA Framework [Conference]. https://www.osti.gov/biblio/1143376

Ober, C.C., Bova, S.W., & Bova, S.W. (2007). Use of a Manufactured Solution for Verifying CFD Flux Schemes and BCs [Conference]. https://www.osti.gov/biblio/1143347

Stewart, J. (2007). SNL Perspectives on Petascale Environments [Conference]. https://www.osti.gov/biblio/1143301

Vaughan, C.T. (2007). The Effects of System Options on Code Performance [Conference]. https://www.osti.gov/biblio/1143348

Underwood, K.D., Hemmert, K.S., Rodrigues, A., & Rodrigues, A. (2007). An Architecture to Perform NIC Based MPI Matching [Conference]. https://www.osti.gov/biblio/1143336

Knupp, P. (2007). Formulation of a Target-Matrix Paradigm for Mesh Optimization [Conference]. https://www.osti.gov/biblio/1143308

Silling, S.A. (2007). Peridynamic States and Constitutive Modeling. Journal of Elasticity, 88(2). https://doi.org/10.1007/s10659-007-9125-1

McKenna, S.A., Hart, W.E., & Hart, W.E. (2007). Water Security: Joint Sandia-Singapore Project [Presentation]. https://www.osti.gov/biblio/1729845

Underwood, K.D. (2007). Next Generation Network Goals [Presentation]. https://www.osti.gov/biblio/1729830

Finley, R., Hart, W.E., McKenna, S.A., Einfeld, W., Fintschenko, Y., Mayer, T.M., Sun, A., & Sun, A. (2007). SNL Proposed Collaboration With Singapore In Water Technology [Conference]. https://www.osti.gov/biblio/1267353

Simonson, R.J., Parks, M.L., Romero, L., & Romero, L. (2007). A Model Describing the Impact of Geometric Dispersion on GC System Performance [Conference]. https://www.osti.gov/biblio/1267233

Sala, M., Lin, P.T., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2007). Algebraic multilevel preconditioners for nonsymmetric PDEs on stretched grids [Conference]. Lecture Notes in Computational Science and Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84880391099&origin=inward

Hendrickson, B.A., Pothen, A., & Pothen, A. (2007). Combinatorial scientific computing: The enabling power of discrete algorithms in computational science [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=38049112739&origin=inward

Bernard, M., Glickman, M.R., Hart, D., Xavier, P.G., Verzi, S.J., Wolfenbarger, P., & Wolfenbarger, P. (2007). Simulating human behavior for national security human interactions. https://doi.org/10.2172/900422

Murphy, R.C., Underwood, K.D., Rodrigues, A., & Rodrigues, A. (2007). The structural simulation toolkit :a tool for exploring parallel architectures and applications [Conference]. https://www.osti.gov/biblio/908876

Boman, E.G. (2007). A Bipartite Graph Model and Algorithm for Fine-Grain Parallel Sparse Matrix Distribution [Conference]. https://www.osti.gov/biblio/1320564

Mehlhorn, T., Yu, E., Vesey, R.A., Cuneo, M.E., Jones, B.M., Knudson, M.D., Sinars, D., Robinson, A.C., Trucano, T.G., Brunner, T.A., Desjarlais, M.P., Garasi, C.J., Haill, T.A., Hanshaw, H., Lemke, R.W., Oliver, B.V., Peterson, K.J., & Peterson, K.J. (2007). Towards a predictive MHD simulation capability for designing hypervelocity magnetically-driven flyer plates and PWclass z-pinch x-ray sources on Z and ZR [Conference]. https://www.osti.gov/biblio/1028927

Silling, S.A., Luk, V., & Luk, V. (2007). High-Rate Particulate Material Modeling with Peridynamics [Conference]. https://www.osti.gov/biblio/1267115

Thompson, A.P. (2007). MD Simulation of Shock-Induced Wurtzite-to-Rocksalt Structural Transformation [Conference]. https://www.osti.gov/biblio/1267210

Moreland, K. (2007). Parallel Unstructured Volume Rendering in ParaView (Presentation) [Conference]. https://www.osti.gov/biblio/1267296

Hetmaniuk, U., Thornquist, H., Baker, C.G., Lehoucq, R.B., & Lehoucq, R.B. (2007). Anasazi software for the numerical solution of large-scale eigenvalue problems. Proposed for publication in ACM Transactions on Math Software.. https://www.osti.gov/biblio/903141

Spencer, F.W. (2007). Summary of POD Study Results [Conference]. https://www.osti.gov/biblio/1320981

Spencer, F.W. (2007). Practical considerations in empirical probability of detection study design [Conference]. Materials Evaluation. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=38749133412&origin=inward

Stubblefield, W.A. (2007). Hacking Sense: Understanding Design and Use as Situated Sensemaking [Conference]. https://www.osti.gov/biblio/1320971

Byrne, R.H., Wilson, D.G., Groom, K.N., Robinett, R.D., Harrington, J.J., Rigdon, J.B., Rohrer, B.R., Laguna, G.A., & Laguna, G.A. (2007). Design tools for complex dynamic security systems. https://doi.org/10.2172/902217

Trucano, T.G., Pilch, M., Oberkampf, W.L., & Oberkampf, W.L. (2007). Remarks on Verification Test Suites [Conference]. https://www.osti.gov/biblio/1267343

Martin, S.B., Mosquera-Caro, M.P., Potter, J.W., Davidson, G.S., Andries, E., Kang, H., Helman, P., Veroff, R.L., Atlas, S.R., Murphy, M., Wang, X., Ar, K., Xu, Y., Chen, I-M., Schultz, F.A., Wilson, C.S., Harvey, R., Bedrick, E., Shuster, J., … Willman, C.L. (2007). Gene expression overlap affects karyotype prediction in pediatric acute lymphoblastic leukemia [17]. Leukemia, 21(6), pp. 1341-1344. https://doi.org/10.1038/sj.leu.2404640

Byrne, R.H., Neely, J.C., Buerger, S., Feddema, J.T., Novick, D., Rose, S.E., Spletzer, B., Sturgis, B.R., Wilson, D.G., & Wilson, D.G. (2007). Advanced robot locomotion. https://doi.org/10.2172/961653

Rothganger, F. (2007). SLAM using camera and IMU sensors. https://doi.org/10.2172/961651

In 't Veld, P.J., Ismail, A.E., Grest, G.S., & Grest, G.S. (2007). Application of Ewald Summation to Long-Range Dispersion Forces. Journal of Chemical Physics, 127(14), pp. 1-17. https://doi.org/10.1063/1.2770730

Graham, R.L., Brightwell, R.B., Barrett, B., Bosilca, G., Pješivac-Grbović, J., & Pješivac-Grbović, J. (2007). An evaluation of open MPI's matching transport layer on the cray XT [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=38449108803&origin=inward

Shipman, G.M., Brightwell, R.B., Barrett, B., Squyres, J.M., Bloch, G., & Bloch, G. (2007). Investigations on InfiniBand: Efficient network buffer utilization at scale [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=38449107963&origin=inward

Riesen, R. (2007). Seshat collects MPI traces: Extended abstract [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=38449085514&origin=inward

Bochev, P., Dohrmann, C.R., Gunzburger, M.D., & Gunzburger, M.D. (2006). Stabilization of low-order mixed finite elements for the stokes equations. SIAM Journal on Numerical Analysis, 44(1), pp. 82-101. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33751528291&origin=inward

Swiler, L.P. (2006). Gaussian processes in response surface modeling [Conference]. Conference Proceedings of the Society for Experimental Mechanics Series. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84861553971&origin=inward

Wang, M.-K., Tautges, T.J., Henderson, D., & Henderson, D. (2006). Acceleration of direct-interface cad-based Monte Carlo radiation transport [Conference]. American Nuclear Society's 14th Biennial Topical Meeting of the Radiation Protection and Shielding Division. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=33845777894&origin=inward

Diegert, C. (2006). Model-based statistical estimation of Sandia RF ohmic switch dynamic operation form stroboscopic, x-ray imaging. https://doi.org/10.2172/900418

Holdych, D.J., Stevens, M.J., In 't Veld, P.J., & In 't Veld, P.J. (2006). Modeling the coupled mechanics, transport, and growth processes in collagen tissues. https://doi.org/10.2172/895701

Murphy, R.C., Berry, J., McLendon, W., Hendrickson, B.A., & Hendrickson, B.A. (2006). DFS: A Simple to Write Yet Difficult to Execute Benchmark [Presentation]. https://doi.org/10.1109/IISWC.2006.302741

Underwood, K.D., Ulmer, C.D., Thompson, D., Hemmert, K.S., & Hemmert, K.S. (2006). FPGAs in High Perfomance Computing: Results from Two LDRD Projects. https://doi.org/10.2172/1137211

Bartlett, R. (2006). Solvers Made Easy (to use and use together): Thyra Stratimikos Handles and More.. [Presentation]. https://www.osti.gov/biblio/1724671

Bartlett, R. (2006). Sensitivities and Optimization: Going Beyond the Forward Solve (to Enable More Predictive Simulations) [Presentation]. https://www.osti.gov/biblio/1724541

Heroux, M.A. (2006). Trilinos 101 Part II: Managing Trilinos Data [Conference]. https://www.osti.gov/biblio/1266171

Heroux, M.A. (2006). Trilinos Overview and Futures [Conference]. https://www.osti.gov/biblio/1266172

Heroux, M.A. (2006). Trilinos Strategic Planning [Conference]. https://www.osti.gov/biblio/1266173

Moreland, K. (2006). IUSV: Production Tools Goals [Presentation]. https://www.osti.gov/biblio/1724580

Siefert, C., Tuminaro, R.S., Hu, J.J., & Hu, J.J. (2006). What's new in ML?: new features in Trilinos 7.0 [Conference]. https://www.osti.gov/biblio/899085

Guilinger, T.R., Gaudioso, J.M., Aceto, D.G., Lowe, K.M., Tucker, M.D., Salerno, R.M., & Salerno, R.M. (2006). Development of Self-Remediating Packaging for Safe and Secure Transport of Infectious Substances. https://doi.org/10.2172/1137219

Howle, V.E., Shuttleworth, R.R., Tuminaro, R.S., & Tuminaro, R.S. (2006). Meros [Conference]. https://www.osti.gov/biblio/1264547

Trucano, T.G. (2006). V&V Principles and Challenges [Conference]. https://www.osti.gov/biblio/1266225

Hart, W.E., Phillips, C.A., & Phillips, C.A. (2006). Generating Customized PICO Applications [Presentation]. https://www.osti.gov/biblio/1724584

Phipps, E.T., Gay, D.M., & Gay, D.M. (2006). Automatic Differentation of C++ Codes With Sacado [Conference]. https://www.osti.gov/biblio/1264033

Pawlowski, R. (2006). An Update on NOX for Trilinos Release 7.0 (A talk for Intermediate Users) [Presentation]. https://www.osti.gov/biblio/1724585

Crozier, P., Grest, G.S., Ismail, A.E., Lehoucq, R.B., Plimpton, S.J., Stevens, M.J., & Stevens, M.J. (2006). Substructured multibody molecular dynamics. https://doi.org/10.2172/902881

Bartlett, R. (2006). Thyra For Developers [Presentation]. https://www.osti.gov/biblio/1724589

Rodrigues, A. (2006). Structural simulation toolkit [Conference]. https://www.osti.gov/biblio/1088094

Underwood, K.D. (2006). FPGAs in HPC: A long road to production [Conference]. https://www.osti.gov/biblio/1264287

Ballance, R.A., Doerfler, D.W., Kelly, S.M., Tomkins, J.L., Stevenson, J.O., & Stevenson, J.O. (2006). Red Storm: an Update on the Upgrade [Presentation]. https://www.osti.gov/biblio/1724594

Leininger, M. (2006). Enabling Large-Scale Scientific Computing with InfiniBand: Experiences with the World's Largest InfiniBand Cluster [Conference]. https://www.osti.gov/biblio/1264225

Salinger, A.G., Dunlavy, D.M., Phipps, E.T., & Phipps, E.T. (2006). Periodic Orbits with 4D [Conference]. https://www.osti.gov/biblio/1264653

Lehoucq, R.B. (2006). Discrete dynamical systems and Preconditioned Non-Hermitian Eigensolvers [Conference]. https://www.osti.gov/biblio/1264182

Hoekstra, R.J., Keiter, E., Phipps, E.T., & Phipps, E.T. (2006). A Multi-Physics Coupling Technique that Preserves Nonlinear Globalization Strategies [Conference]. https://www.osti.gov/biblio/1264586

Salinger, A.G. (2006). Bordered matrix methods for large-scale stability analysis using LOCA [Conference]. https://www.osti.gov/biblio/1264048

Debusschere, B.J., Adalsteinsson, H., Long, K., Najm, H.N., Hickner, M., Simmons, B., Davalos, R.V., Ponce, P., & Ponce, P. (2006). Multiscale Simulation of Ionic Flux through a Nanopore [Conference]. https://www.osti.gov/biblio/1264587

Boslough, M., Taylor, M.A., & Taylor, M.A. (2006). Supercomputer simulations of 3D seismic waves from a giant impact [Presentation]. https://www.osti.gov/biblio/1724621

Knupp, P., Hetmaniuk, U., & Hetmaniuk, U. (2006). Local 2D metrics for mesh optimization in the target-matrix paradigm. Proposed for publication in the SIAM Journal on Scientific Computing.. https://www.osti.gov/biblio/897135

Shadid, J.N. (2006). FCT algorithms for the Euler equations on overset grids [Presentation]. https://www.osti.gov/biblio/1724622

Preece, D.S. (2006). Oil Shale Blasting Simulations Employing State-of-the-Art (2006) Computer Hydro-Codes and Constitutive Models [Conference]. https://www.osti.gov/biblio/1264613

Alexander, C.S., Thompson, A.P., Chhabildas, L.C., Furnish, M.D., Dolan, D.H., Davis, J.P., Lemke, R.W., Desjarlais, M.P., Hertel, E.S., & Hertel, E.S. (2006). AWE Discussions [Presentation]. https://www.osti.gov/biblio/1724616

Cooper, S., Elbring, G.J., Jakaboski, B.E., Lorenz, J.C., Mani, S., Normann, R., Rightley, M.J., van Bloemen Waanders, B.G., Weiss, C.J., & Weiss, C.J. (2006). Analysis of real-time reservoir monitoring : reservoirs, strategies, & modeling. https://doi.org/10.2172/966614

Modine, N.A., Wright, A.F., Muller, R.P., Sears, M.P., Wills, A.E., Desjarlais, M.P., & Desjarlais, M.P. (2006). Beyond the local density approximation : improving density functional theory for high energy density physics applications. https://doi.org/10.2172/976954

Swiler, L.P., Hough, P.D., Gray, G.A., Chiesa, M.L., Heaphy, R.T., Thomas, S.W., Trucano, T.G., & Trucano, T.G. (2006). Penetrator reliability investigation and design exploration : from conventional design processes to innovative uncertainty-capturing algorithms. https://doi.org/10.2172/966591

Brown, S.L., Griffin, J.D., Hough, P.D., Kolda, T.G., Martinez-Canales, M., Williams, P.J., Adams, B.M., Dunlavy, D.M., Gay, D.M., Swiler, L.P., Giunta, A.A., Hart, W.E., Watson, J., Eddy, J.P., & Eddy, J.P. (2006). DAKOTA, a multilevel parallel object-oriented framework for design optimization, parameter estimation, uncertainty quantification, and sensitivity analysis:version 4.0 reference manual. https://doi.org/10.2172/895073

Brown, S.L., Griffin, J.D., Hough, P.D., Kolda, T.G., Martinez-Canales, M., Williams, P.J., Adams, B.M., Dunlavy, D.M., Gay, D.M., Swiler, L.P., Giunta, A.A., Hart, W.E., Watson, J., Eddy, J.P., & Eddy, J.P. (2006). Dakota, a multilevel parallel object-oriented framework for design optimization, parameter estimation, uncertainty quantification, and sensitivity analysis:version 4.0 developers manual. https://doi.org/10.2172/896280

Dunlavy, D.M. (2006). QCS: a system for querying, clustering and summarizing documents. https://doi.org/10.2172/894745

Frost-Murphy, S.E., Debenedictis, E., & Debenedictis, E. (2006). On the design of reversible QDCA systems. https://doi.org/10.2172/895074

Zimmerman, J.A., Collis, S.S., Fang, H.E., Lee, J., Lehoucq, R.B., Moody, N.R., Plimpton, S.J., & Plimpton, S.J. (2006). Multidisciplinary Approaches to Science for Nanoscale Interfaces [Presentation]. https://www.osti.gov/biblio/1725675

Leininger, M. (2006). InfiniBand and OpenFabrics Successes and Future Requirements [Conference]. https://www.osti.gov/biblio/1264458

Adams, B.M., Wittwer, J.W., Bichon, B.J., Carnes, B., Copps, K.D., Eldred, M., Hopkins, M.M., Neckels, D., Notz, P.K., Subia, S.R., & Subia, S.R. (2006). Solution-verified reliability analysis and design of bistable MEMS using error estimation and adaptivity. https://doi.org/10.2172/896282

Hendrickson, B.A., Berry, J., McLendon, W., Murphy, R.C., & Murphy, R.C. (2006). High Performance Graph Queries [Conference]. https://www.osti.gov/biblio/1264318

Berry, J. (2006). Massive Multithreading for Discrete Unstructured Computations: An Overview of Hardware Software and Algorithms [Presentation]. https://www.osti.gov/biblio/1725697

Caskey, S.A., Salerno, R.M., Gaudioso, J.M., & Gaudioso, J.M. (2006). International Biological Threat Reduction at Sandia [Presentation]. https://www.osti.gov/biblio/1725695

Swiler, L.P., Giunta, A.A., Hart, W.E., Watson, J., Eddy, J.P., Griffin, J.D., Hough, P.D., Kolda, T.G., Martinez-Canales, M., Williams, P.J., Eldred, M., Brown, S.L., Adams, B.M., Dunlavy, D.M., Gay, D.M., & Gay, D.M. (2006). DAKOTA, a multilevel parellel object-oriented framework for design optimization, parameter estimation, uncertainty quantification, and sensitivity analysis:version 4.0 uers's manual. https://doi.org/10.2172/895703

Trucano, T.G. (2006). Modeling and Simulation for National Security Decision Making: Towards a Practical Epistemology of Scientific Computing [Conference]. https://www.osti.gov/biblio/1264571