Publications

Wilson, A.T. (2008). All the World's a Stream [Presentation]. https://www.osti.gov/biblio/1713029

Boman, E.G. (2008). Vertex separator as hypergraph partitioning [Conference]. https://www.osti.gov/biblio/1146382

Siefert, C., Bochev, P., Hu, J.J., Tuminaro, R.S., & Tuminaro, R.S. (2008). Performance and Scalability in Computational Electromagnetics at Sandia [Presentation]. https://www.osti.gov/biblio/1713030

Snow, C., Schultz, P.A., & Schultz, P.A. (2008). First principles site occupation and migration of hydrogen helium and oxygen beta-phase erbium hydride. Journal of Applied Physics, 103(12). https://doi.org/10.1063/1.2940134

Ward, H.L. (2008). Some Open Problems in Supercomputing I/O [Presentation]. https://www.osti.gov/biblio/1713035

Brown, W., Watson, J., & Watson, J. (2008). Algorithmic Dimensionality Reduction for Molecular Structure Analysis. Journal of Chemical Physics, 129(6). https://doi.org/10.1063/1.2968610

Hetmaniuk, U., Knupp, P., & Knupp, P. (2008). A mesh optimization algorithm to decrease the maximum error in finite element computations [Conference]. Proceedings of the 17th International Meshing Roundtable, IMR 2008. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84879538211&origin=inward

Shontz, S.M., Knupp, P., & Knupp, P. (2008). The effect of vertex reordering on 2D local mesh optimization efficiency [Conference]. Proceedings of the 17th International Meshing Roundtable, IMR 2008. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84865266391&origin=inward

Rohrer, B.R. (2008). A unified architecture for cognition and motor control based on neuroanatomy, psychophysical experiments, and cognitive behaviors [Conference]. AAAI Fall Symposium - Technical Report. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=67449167552&origin=inward

Dornburg, C.C., Hendrickson, S.M., Davidson, G.S., & Davidson, G.S. (2008). Individual and group electronic brainstorming in an industrial setting [Conference]. Proceedings of the Human Factors and Ergonomics Society. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=70350588921&origin=inward

May, E., Leitao, A., Faulon, J.-L., Joo, J., Misra, M., Oprea, T.I., & Oprea, T.I. (2008). Understanding virulence mechanisms in M. tuberculosis infection via a circuit-based simulation framework [Conference]. Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology". https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=61849103491&origin=inward

Swiler, L.P., Adams, B.M., Eldred, M., & Eldred, M. (2008). Model calibration under uncertainty: Matching distribution information [Conference]. 12th AIAA/ISSMO Multidisciplinary Analysis and Optimization Conference, MAO. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=78049489285&origin=inward

Berry, J., Lin, H., Lauer, E., Phillips, C., & Phillips, C. (2007). Scheduling manual sampling for contamination detection in municipal water networks [Conference]. 8th Annual Water Distribution Systems Analysis Symposium 2006. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=40549084720&origin=inward

Bazilevs, Y., Calo, V.M., Cottrell, J.A., Hughes, T.J.R., Reali, A., Scovazzi, G., & Scovazzi, G. (2007). Variational multiscale residual-based turbulence modeling for large eddy simulation of incompressible flows. Computer Methods in Applied Mechanics and Engineering, 197(1-4), pp. 173-201. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=35348895586&origin=inward

Underwood, K.D., Levenhagen, M., Brightwell, R.B., & Brightwell, R.B. (2007). Evaluating NIC hardware requirements to achieve high message rate PGAS support on multi-core processors [Conference]. Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, SC'07. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=56749163672&origin=inward

Hart, W.E., Berry, J., Heaphy, R.T., Phillips, C.A., & Phillips, C.A. (2007). EXACT: The experimental algorithmics computational toolkit [Conference]. Proceedings of the 2007 Workshop on Experimental Computer Science. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=37849009349&origin=inward

Boccelli, D.L., Hart, W.E., & Hart, W.E. (2007). Optimal monitoring location selection for water quality issues [Conference]. Restoring Our Natural Habitat - Proceedings of the 2007 World Environmental and Water Resources Congress. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=80051634111&origin=inward

Murphy, R.C. (2007). On the effects of memory latency and bandwidth on supercomputer application performance [Conference]. Proceedings of the 2007 IEEE International Symposium on Workload Characterization, IISWC. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=47349098288&origin=inward

Robbins, J., Voth, T.E., & Voth, T.E. (2007). An extended finite element method formulation for modeling the response of polycrystalline materials to dynamic loading [Conference]. AIP Conference Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=71849096218&origin=inward

Diegert, K., Klenke, S.E., Paulsen, R., Pilch, M., Trucano, T.G., & Trucano, T.G. (2007). Toward a more rigorous application of margins and uncertainties within the nuclear weapons life cycle : a Sandia perspective. https://doi.org/10.2172/933214

Murphy, R.C. (2007). On the effects of memory latency and bandwidth on supercomputer application performance [Conference]. Proceedings of the 2007 IEEE International Symposium on Workload Characterization, IISWC. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=47349098288&origin=inward

Heroux, M.A. (2007). The changing scope of Trilinos. https://doi.org/10.2172/926369

Alvin, K.F. (2007). Selection of Journal Article for Special Section of SIAM Review [Presentation]. https://www.osti.gov/biblio/1713050

Webster, C. (2007). The analysis of a sparse grid stochastic collocation method for partial differential equations with high-dimensional random input data. https://doi.org/10.2172/934852

Slepoy, A., Peters, M.D., Thompson, A.P., & Thompson, A.P. (2007). Searching for globally optimal functional forms for interatomic potentials using genetic programming with parallel tempering. Journal of Computational Chemistry, 28(15), pp. 2465-2471. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=35349019828&origin=inward

Robbins, J., Khraishi, T.A., Chaplya, P.M., & Chaplya, P.M. (2007). Microstructural modeling of ferroic switching and phase transitions in PZT [Conference]. Proceedings of SPIE - The International Society for Optical Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=35548944041&origin=inward

Edwards, H.C. (2007). A Programming Model for Hybrid Parallelism with Consistent Numerical Results [Presentation]. https://www.osti.gov/biblio/1719092

Schultz, P.A. (2007). Beyond Black Boxes - Moving From Science to Engineering [Presentation]. https://www.osti.gov/biblio/1719095

Hopkins, M.M., Pawlowski, R., Moffat, H.K., Carnes, B., Hooper, R., & Hooper, R. (2007). Final report on LDRD project : coupling strategies for multi-physics applications. https://doi.org/10.2172/1029797

Boman, E.G. (2007). A Nested Dissection Approach for Sparse Matrix Partitioning [Conference]. https://www.osti.gov/biblio/1147491

Siefert, C., Hu, J.J., Tuminaro, R.S., & Tuminaro, R.S. (2007). What's New in ML? New Features in Trilinos 8.0 [Conference]. https://www.osti.gov/biblio/1147372

Ridzal, D., Bochev, P., & Bochev, P. (2007). Intrepid [Presentation]. https://www.osti.gov/biblio/1720262

Pawlowski, R., Hill, J.C., Salinger, A.G., & Salinger, A.G. (2007). Theoretical Modeling of Singlet Oxygen Generators [Conference]. https://www.osti.gov/biblio/1147476

Boman, E.G. (2007). Efficient Partitioning and Load Balancing [Presentation]. https://www.osti.gov/biblio/1720266

Bartlett, R. (2007). Using Thyra and Stratimikos to build block composite solver capabilities [Conference]. https://www.osti.gov/biblio/1147380

Dunlavy, D.M. (2007). The Titan Project: Requirements for Data Mining & Analysis [Conference]. https://www.osti.gov/biblio/1147226

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2007). Statistical Coarse-graining of Classical Mechanics into Peridynamics [Presentation]. https://www.osti.gov/biblio/1720270

Bartlett, R. (2007). Daily Integration and Testing of the Development Versions of Applications and Trilinos: A stronger foundation for enhanced collaboration in application and algorithm research and development [Conference]. https://www.osti.gov/biblio/1147448

Bartlett, R. (2007). New Teuchos Utility Classes for Safer Memory Management in C++ [Conference]. https://www.osti.gov/biblio/1147211

Ridzal, D. (2007). An Inexact Trust-Region SQP Method with Applications to PDE-Constrained Optimization [Presentation]. https://www.osti.gov/biblio/1720272

Owen, S.J., Clark, B.W., Melander, D., Shepherd, J.F., Brewer, M., & Brewer, M. (2007). Immersive Topology Environment for Meshing [Conference]. https://www.osti.gov/biblio/1146840

Lehoucq, R.B. (2007). Dynamical systems and Iterative Eigensolvers [Presentation]. https://www.osti.gov/biblio/1720276

Ward, H.L. (2007). Scalable IO Requirements at Petascale [Conference]. https://www.osti.gov/biblio/1147191

Murphy, R.C., Rodrigues, A., & Rodrigues, A. (2007). Sandia Memory and Network Research - November 2007 [Presentation]. https://www.osti.gov/biblio/1720291

Pedretti, K. (2007). Characterization of Intra-node Topology and Locality [Presentation]. https://www.osti.gov/biblio/1720279

Bartlett, R. (2007). FY07 ASC Vertical Integration Milestone: Overview Lessons Learned and Next Steps [Conference]. https://www.osti.gov/biblio/1147605

Crozier, P., Plimpton, S.J., & Plimpton, S.J. (2007). Substructured Molecular Dynamics using Multibody Dynamics Algorithm. International Journal of Nonlinear Mechanics. https://www.osti.gov/biblio/1147588

Lin, P.T. (2007). From CFD to FEM Modeling of Semiconductor Devices [Presentation]. https://www.osti.gov/biblio/1720300

Hart, W.E., Phillips, C.A., Watson, J., & Watson, J. (2007). Testing LP/MIP Solvers with EXACT [Conference]. https://www.osti.gov/biblio/1146348

Astuto Gribble, L., Gaudioso, J.M., & Gaudioso, J.M. (2007). The acquisition of dangerous biological materials: Technical facts sheets to assist risk assessments of 46 potential BW agents. https://doi.org/10.2172/1177072

Love, E., Scovazzi, G., & Scovazzi, G. (2007). The Details of the ALEGRA Lagrangian Hydrodynamics Method [Conference]. https://www.osti.gov/biblio/1146308

Love, E., Scovazzi, G., & Scovazzi, G. (2007). A Stability Analysis of the ALEGRA Lagrangian Hydrodynamics Method%10%10%10 [Conference]. https://www.osti.gov/biblio/1146412

Siefert, C. (2007). Introduction to Multilevel Solvers for the Physical Sciences [Presentation]. https://www.osti.gov/biblio/1713149

Backus, G.A., Strip, D.R., & Strip, D.R. (2007). Behavior-aware decision support systems : LDRD final report. https://doi.org/10.2172/934860

Backus, G.A., Strip, D.R., Siirola, J.D., Bastian, M.S., Schoenwald, D.A., Braithwaite, K.R., & Braithwaite, K.R. (2007). Accommodating complexity and human behaviors in decision analysis. https://doi.org/10.2172/1097201

Moreland, K. (2007). Porter and Duff Compositing and Volume Rendering [Presentation]. https://www.osti.gov/biblio/1713164

Bishop, J.E., Crawford, D.A., Edwards, H.C., & Edwards, H.C. (2007). An overview of the new CTH-PRESTO coupling for modeling blast effects on structures [Conference]. https://www.osti.gov/biblio/946280

Rohrer, B.R. (2007). BECCA general presentation [Conference]. https://www.osti.gov/biblio/1146569

Trucano, T.G., Pilch, M., Oberkampf, W.L., & Oberkampf, W.L. (2007). On the Intersection of V&V and SQE [Presentation]. https://www.osti.gov/biblio/1713166

Heroux, M.A. (2007). Trilinos Strategic Planning [Conference]. https://www.osti.gov/biblio/1146935

Bartlett, R., Hoekstra, R.J., & Hoekstra, R.J. (2007). Large-scale transient sensitivity analysis of a radiation damaged bipolar junction transistor [Conference]. https://www.osti.gov/biblio/946268

Siefert, C., Bochev, P., Tuminaro, R.S., Hu, J.J., & Hu, J.J. (2007). Algebraic Multigrid and a Compatible Gauge Reformulation of Maxwell's Equations [Conference]. https://www.osti.gov/biblio/1146660

Jacobs, B.W., Ayres, V.M., Stallcup, R.E., Hartman, A., Tupta, M.A., Baczewski, A.D., Crimp, M.A., Halpern, J.B., He, M., Shaw, H.C., & Shaw, H.C. (2007). Electron transport in zinc-blende wurtzite biphasic gallium nitride nanowires and GaNFETs. Nanotechnology, 18(47), pp. 1-7. https://doi.org/10.1088/0957-4484/18/47/475710

Pilch, M., Oberkampf, W.L., Trucano, T.G., & Trucano, T.G. (2007). Predictive Capability Maturity Model for computational modeling and simulation. https://doi.org/10.2172/976951

Bochev, P., Collis, S.S., Jones, R.E., Lehoucq, R.B., Parks, M.L., Scovazzi, G., Silling, S.A., Templeton, J.A., Wagner, G.J., & Wagner, G.J. (2007). A mathematical framework for multiscale science and engineering : the variational multiscale method and interscale transfer operators. https://doi.org/10.2172/922756

Ridzal, D. (2007). Rehabilitation of the lowest-order Raviart-Thomas element on quadrilateral grids. SIAM J. Numerical Analysis. https://www.osti.gov/biblio/1146565

Myers, D.S., Gonzales, A., Rothganger, F., Larson, K., & Larson, K. (2007). Implementing wide baseline matching algorithms on a graphics processing unit. https://doi.org/10.2172/921737

Moreland, K., Wylie, B.N., & Wylie, B.N. (2007). Massive graph visualization : LDRD final report. https://doi.org/10.2172/921736

Watson, J., Strip, D.R., & Strip, D.R. (2007). Deployment of Enterprise-Scale Systems Sustainability Optimization on Commodity Compute Clusters. INFORMS Journal on Computing. https://www.osti.gov/biblio/1146681

Gaudioso, J.M., Caskey, S.A., & Caskey, S.A. (2007). UNDERSTANDING CURRENT LABORATORY BIOSAFETY AND BIOSECURITY PRACTICES AROUND THE WORLD [Conference]. https://www.osti.gov/biblio/1141838

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2007). A Mathematical Theory for Peridynamics: Force Flux and the Peridynamic Stress Tensor [Conference]. https://www.osti.gov/biblio/1142255

Moreland, K. (2007). Large Scale Visualization with ParaView 3 (Supercomputing Tutorial Slides for Handouts) [Presentation]. https://www.osti.gov/biblio/1716615

Lehoucq, R.B., Silling, S.A., & Silling, S.A. (2007). Statistical coarse-graining of molecular dynamics into peridynamics. https://doi.org/10.2172/922771

Edwards, H.C. (2007). An HPC Component for Parallel Heterogeneous and Dynamic unstructured Meshes (phdMesh) [Conference]. https://www.osti.gov/biblio/1142020

Banks, J.W. (2007). High Speed Flow Solvers for Overlapping Grids [Conference]. https://www.osti.gov/biblio/1146595

Parks, M.L. (2007). The Fast Solution of Sequences of Linear Systems via Subspace Recycling [Presentation]. https://www.osti.gov/biblio/1716603

Heroux, M.A. (2007). Software Engineering in the Trilinos Project: Then Now and To Come [Presentation]. https://www.osti.gov/biblio/1716621

Wills, A.E., Mattsson, T., & Mattsson, T. (2007). The AM05 functional applied to solids. Journal of Chemical Physics. https://www.osti.gov/biblio/1146874

Laviolette, R.A., Hendrickson, B.A., Leung, V.J., Phillips, C.A., & Phillips, C.A. (2007). Community Detection vis Facility Location. Phycisal Review Letters. https://www.osti.gov/biblio/1146883

Gill, D.D., Atwood, C.J., Robbins, J., Voth, T.E., & Voth, T.E. (2007). Titanium cholla : lightweight, high-strength structures for aerospace applications. https://doi.org/10.2172/922082

Silling, S.A., Lehoucq, R.B., & Lehoucq, R.B. (2007). Atoms and Peridynamic Continua [Conference]. https://www.osti.gov/biblio/1146475

Ridzal, D. (2007). Analysis and Control of Numerical Uncertainty in PDE-Constrained Optimization [Presentation]. https://www.osti.gov/biblio/1719031

Hart, W.E., Boman, E.G., Riesen, L., Berry, J., Phillips, C.A., Watson, J., & Watson, J. (2007). Limited-Memory Techniques for Sensor Placement in Water Distribution Networks [Conference]. https://www.osti.gov/biblio/1146836

Shadid, J.N., Banks, J.W., & Banks, J.W. (2007). A Magnetic Drive JxB Source Term for Developing Prototype Z-pinch Shock-Hydro Problems. Physics of Plasmas. https://www.osti.gov/biblio/1146505

Doerfler, D.W., Rajan, M., Pedretti, K., & Pedretti, K. (2007). Benchmarking Multicore Processors [Presentation]. https://www.osti.gov/biblio/1719046

Dunlavy, D.M. (2007). Multilinear Algebra for Analyzing Data with Multiple Linkages [Presentation]. https://www.osti.gov/biblio/1719014

Dunlavy, D.M. (2007). Applying Mathematics: Solving Problems at a National Laboratory [Presentation]. https://www.osti.gov/biblio/1719015

Schultz, P.A. (2007). Roles of Oxygen in Crystalline GST and at the GST/TiAlN INterface [Conference]. https://www.osti.gov/biblio/1146518

Hetmaniuk, U., Knupp, P., & Knupp, P. (2007). An R-adaptive Mesh Optimization Algorithm Based on Interpolation Error Bounds [Conference]. https://www.osti.gov/biblio/1146642

Grest, G.S., In 't Veld, P.J., Lechman, J.B., & Lechman, J.B. (2007). Molecular Simulations of Nanoparticles in an ExplicitSolvent [Conference]. https://www.osti.gov/biblio/1146784

Edwards, H.C. (2007). Parallel Heterogeneous Dynamic unstructured Mesh (phdMesh) A new package in Trilinos [Presentation]. https://www.osti.gov/biblio/1719087

Hoekstra, R.J., Castro, J.P., Shadid, J.N., Fixel, D.A., & Fixel, D.A. (2007). Simulation of neutron radiation damage in silicon semiconductor devices. https://doi.org/10.2172/934581

Olsson, R.H., Wojciechowski, K.E., Yepez, E., Novick, D., Peterson, K.A., Turner, T., Wheeler, J.W., Rohrer, B.R., Kholwadwala, D.K., & Kholwadwala, D.K. (2007). Portable, chronic neural interface system design for sensory augmentation [Conference]. Proceedings of the 3rd International IEEE EMBS Conference on Neural Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=34548782701&origin=inward

Voth, T.E., Mosso, S.J., Robbins, J., & Robbins, J. (2007). Coupling volume-of-fluid based interface reconstructions with the extended finite element method. Computer Methods in Applied Mechanics and Engineering, 197(5), pp. 439-447. https://doi.org/10.1016/j.cma.2007.08.010

Weirs, G., Lemke, R.W., Robinson, A.C., Ober, C.C., Banks, J.W., Love, E., Scovazzi, G., Shadid, J.N., Hanshaw, H., & Hanshaw, H. (2007). Algorithm developments in alegra guided by testing [Conference]. https://www.osti.gov/biblio/1266291

Swiler, L.P., Vugrin, K.E.W., & Vugrin, K.E.W. (2007). Calibration under Uncertainty: Comparison of Least-Squares and Bayesian methods [Conference]. https://www.osti.gov/biblio/1147402

Robinson, A.C., Mosso, S.J., Siefert, C., Hu, J.J., & Hu, J.J. (2007). Consequences for scalability arising from multi-material modeling [Conference]. https://www.osti.gov/biblio/1266907

Dornburg, C.C., Davidson, G.S., Forsythe, J.C., & Forsythe, J.C. (2007). Yellow sticky, PHP software for an electronic brainstorming experiment. https://doi.org/10.2172/920454

Schultz, P.A. (2007). Is the density functional theory band gap problem truly a problem? - Defects in silicon [Presentation]. https://www.osti.gov/biblio/1721371

Gray, G.A., Williams, P.J., Hough, P.D., Howle, V.E., & Howle, V.E. (2007). Analysis Tools for Detection Systems and Assessments [Presentation]. https://www.osti.gov/biblio/1724557