Publications

Landahl, A.J. (2011). Adiabatic topological quantum computing [Presentation]. https://www.osti.gov/biblio/1671504

Ober, C.C., van Bloemen Waanders, B.G., Collis, S.S., & Collis, S.S. (2011). On water column effects on source signature inversion in marine seismic acquisition [Conference]. https://www.osti.gov/biblio/1289625

Shadid, J.N., Pawlowski, R., Cyr, E.C., & Cyr, E.C. (2011). Reactor core sub-assembly simulations using a stabilized finite element method [Conference]. https://www.osti.gov/biblio/1289784

Heroux, M.A. (2011). Fault-tolerant iterative methods [Conference]. https://www.osti.gov/biblio/1108509

Bernard, M., Verzi, S.J., Taylor, S.E., Dubicka, I., McClain, J.T., Vineyard, C.M., & Vineyard, C.M. (2011). Augmented Cognition Tool for Rapid Military Decision Making (ACORD) [Presentation]. https://www.osti.gov/biblio/1671500

Wagner, G.J., Deng, J., Plimpton, S.J., Thompson, A.P., Zimmerman, J.A., & Zimmerman, J.A. (2011). Long Timescale Atomistic Simulation Methods for Solid Materials [Presentation]. https://www.osti.gov/biblio/1671461

Peterson, K., Bochev, P., Ridzal, D., & Ridzal, D. (2011). Intrepid Functionality for Parvis [Presentation]. https://www.osti.gov/biblio/1671462

Dunlavy, D.M. (2011). What Can I Do With Math? [Presentation]. https://www.osti.gov/biblio/1671463

Moreland, K. (2011). Sort-Last Smackdown! [Conference]. https://www.osti.gov/biblio/1108378

Ferreira, K.B., Oldfield, R., Stearley, J., Laros, J.H., Pedretti, K.T.T., Brightwell, R.B., & Brightwell, R.B. (2011). rMPI : increasing fault resiliency in a message-passing environment. https://doi.org/10.2172/1012733

Scovazzi, G., Carnes, B., & Carnes, B. (2011). Weak Boundary Conditions for Wave Propagation Problems in Con?ned Domains. Coomputer Methods in Applied Mechanics and Engineering. https://www.osti.gov/biblio/1108375

Doerfler, D.W., Rajan, M., Epperson, M., Vaughan, C.T., Pedretti, K., Barrett, R.F., Barrett, B., & Barrett, B. (2011). A Comparison of the Performance Characteristics of Capability and Capacity Class HPC Systems [Conference]. https://www.osti.gov/biblio/1108395

Stubblefield, W.A., McNamara, L.A., Trucano, T.G., Shepherd, J.F., & Shepherd, J.F. (2011). Abstract: Activity Theory and artifact-mediated collaboration as a foundation for designing large-scale data analysis tools [Conference]. https://www.osti.gov/biblio/1108353

Moreland, K. (2011). Large Scale Visualization with ParaView - SC11 Tutorial Proposal [Presentation]. https://www.osti.gov/biblio/1671483

Littlewood, D.J. (2011). Recent Advancements in Peridynamics with Applications to Failure Modeling [Presentation]. https://www.osti.gov/biblio/1671482

Ferreira, K.B., Stearley, J., Laros, J.H., Oldfield, R., Pedretti, K., Brightwell, R.B., Bridges, P.G., & Bridges, P.G. (2011). Evaluating the Viability of Process Replication Reliability for Exascale Systems [Conference]. https://www.osti.gov/biblio/1108309

Hart, W.E. (2011). Rethinking Optimization Challenges for Molecular Docking Applications [Conference]. https://www.osti.gov/biblio/1120393

Hart, W.E. (2011). Pyomo: Modeling and Solving Mathematical Programs in Python [Conference]. https://www.osti.gov/biblio/1120436

Moreland, K., Fabian, N., & Fabian, N. (2011). The ParaView Coprocessing Library: A scalable general purpose in situ visualization library [Conference]. https://www.osti.gov/biblio/1120426

Moreland, K. (2011). UltraVis Research Overview - DOECGF 2011 [Presentation]. https://www.osti.gov/biblio/1671437

Moreland, K. (2011). Site Report DOECGF 2011 [Conference]. https://www.osti.gov/biblio/1108326

Brightwell, R.B. (2011). Porting Portals to OFED [Presentation]. https://www.osti.gov/biblio/1671441

Brightwell, R.B. (2011). A Perspective on Operating and Runtime Systems for Exascale Computing [Presentation]. https://www.osti.gov/biblio/1671442

Doerfler, D.W. (2011). Using LANL Applications for Performance Testing of Cielo Red Sky .. [Presentation]. https://www.osti.gov/biblio/1671448

Wixom, R.R., Mattsson, T., Wills, A.E., & Wills, A.E. (2011). Calculating Hugoniots for molecular crystals from First Principles [Conference]. https://www.osti.gov/biblio/1120382

Najm, H.N., Debusschere, B.J., Eldred, M., Phipps, E.T., & Phipps, E.T. (2011). SciDAC Institute QUEST (Quantification of Uncertainty in Extreme Scale Computations) [Presentation]. https://www.osti.gov/biblio/1671447

Wills, A.E., Hao, F., Mattsson, T., Wixom, R.R., Cragg, G., & Cragg, G. (2011). Density Functional Theory: The Bridge between Theoretical Condensed Matter Physics and Engineering [Presentation]. https://www.osti.gov/biblio/1671445

Heroux, M.A. (2011). Building the Next Generation of Parallel Applications: Co-Design Opportunities and Challenges [Conference]. https://www.osti.gov/biblio/1108313

Moreland, K. (2011). What's New in ParaView - DOECGF 2011 [Presentation]. https://www.osti.gov/biblio/1671449

Swiler, L.P., Urbina, A., & Urbina, A. (2011). Multiple Model Inference: Calibration and Selection with Multiple Models [Conference]. https://www.osti.gov/biblio/1108237

Wildey, T. (2011). Multiscale Mortar Methods for Flow and Mechanics in Porous Media [Conference]. https://www.osti.gov/biblio/1288934

Wolf, M.M., Heroux, M.A., Boman, E.G., & Boman, E.G. (2011). Factors impacting performance of multithreaded sparse riangular solvet [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=79952576488&origin=inward

Bond, B. (2011). Accelerated Simulation of Analog Systems Using Linear and Nonlinear Robust Compact Models [Presentation]. https://www.osti.gov/biblio/1671647

Moreland, K. (2011). Dax: Data Analysis at Extreme poster [Presentation]. https://www.osti.gov/biblio/1671644

Barrett, R.F., Drake, R.R., Robinson, A.C., & Robinson, A.C. (2011). Preparing Multi-physics Multi-scale Codes for Hybrid HPC [Conference]. https://www.osti.gov/biblio/1109140

Kelly, S.M., Brightwell, R.B., Ballance, R.A., & Ballance, R.A. (2011). Systems Software [Presentation]. https://www.osti.gov/biblio/1671593

Lin, P.T., Shadid, J.N., & Shadid, J.N. (2011). Implicit Newton-Krylov Drift-Diffusion Semiconductor Simulations on Multicore Architectures [Conference]. https://www.osti.gov/biblio/1109164

Lin, P.T. (2011). Dawn BG/P Critical for Improving Scaling of Algorithms to Prepare for Massively Parallel Future System [Presentation]. https://www.osti.gov/biblio/1671596

Adams, B.M., Eldred, M., & Eldred, M. (2011). Advanced Uncertainty Quantification for Optimization under Uncertainty [Conference]. https://www.osti.gov/biblio/1120636

Pawlowski, R., Belcourt, K., Schmidt, R., & Schmidt, R. (2011). Multiphysics coupling via LIME : [Conference]. https://www.osti.gov/biblio/1288932

Shadid, J.N. (2011). Fully-coupled AMG Preconditioned Newton-Krylov Solution Methods for Strongly-coupled Multiphysics Applications [Conference]. https://www.osti.gov/biblio/1120585

Collis, S.S., Ober, C.C., Overfelt, J.R., Young, J.G., & Young, J.G. (2011). Large Scale Inversion using a Discontinuous Galerkin Method for Geophysics [Conference]. https://www.osti.gov/biblio/1109159

Bond, S.D. (2011). Goal-Oriented Adaptivity for the Poisson-Boltzmann Equation [Conference]. https://www.osti.gov/biblio/1109179

Backus, G.A., Trucano, T.G., Robinson, D.G., Adams, B.M., Richards, E.H., Siirola, J.D., Boslough, M., Taylor, M.A., Conrad, S.H., Kelic, A., Roach, J.D., Warren, D.E., Ballantine, M.D., Stubblefield, W.A., Snyder, L., Finley, R., Horschel, D.S., Ehlen, M., Klise, G.T., … Zagonel, A. (2011). Assessing the Near-Term Risk of Climate Uncertainty:Interdependencies among the U.S. States [Conference]. https://www.osti.gov/biblio/1120834

Hoekstra, R.J. (2011). SEMS [Presentation]. https://www.osti.gov/biblio/1671609

Pawlowski, R., Red-Horse, J.R., & Red-Horse, J.R. (2011). Uncertainty Quantification and Stochastic Dimension Reduction for Complex Coupled Systems [Conference]. https://www.osti.gov/biblio/1109175

Bernard, M., Backus, G.A., Glickman, M.R., Verzi, S.J., & Verzi, S.J. (2011). Using a Hybrid Cognitive-System Dynamics Model to Anticipate the Influence of Events and Actions on Human Behaviors [Conference]. https://www.osti.gov/biblio/1109155

Tuminaro, R.S., Gaidamour, J., Gerstenberger, A., Hu, J.J., Siefert, C., & Siefert, C. (2011). Leveraging flexibility in energy minimization algebraic multigrid [Conference]. https://www.osti.gov/biblio/1288862

Hemmert, K.S. (2011). Exascale Interconnect Requirements [Conference]. https://www.osti.gov/biblio/1109158

Shadid, J.N. (2011). Towards a Scalable Fully-implicit Fully-coupled Resistive MHD Formulation with Stabilized FE Methods [Conference]. https://www.osti.gov/biblio/1109151

Ridzal, D., Young, J.G., & Young, J.G. (2011). Optimization--based modeling with applications to transport. Part 1. Abstract formulation [Conference]. https://www.osti.gov/biblio/1109035

Rogers, D. (2011). The Bigger the Data the Harder it Falls: Current Problems in Large Data Analysis [Presentation]. https://www.osti.gov/biblio/1671571

Taylor, M.A., Overfelt, J.R., & Overfelt, J.R. (2011). The Variable Resolution Spectral Element Dynamical Core in the Community Atmospheric Model (CAM) [Conference]. https://www.osti.gov/biblio/1109007

Madison, J., Tikare, V., Holm, E.A., Plimpton, S.J., & Plimpton, S.J. (2011). Simulation of Recrystallization in Uranium Dioxide Nuclear Fuels [Conference]. https://www.osti.gov/biblio/1120579

Guba, O., Taylor, M.A., & Taylor, M.A. (2011). Quasi-Monotone Advection Methods for Spectral Elements [Conference]. https://www.osti.gov/biblio/1109028

Jayaraman, S. (2011). Alchemy in MD [Conference]. https://www.osti.gov/biblio/1141205

Shadid, J.N., Pawlowski, R., Tuminaro, R.S., & Tuminaro, R.S. (2011). Approximate Block Factorization Preconditioners for Primitive Variable Incompressible Resistive MHD [Conference]. https://www.osti.gov/biblio/1108774

Witzel, W., Carroll, M.S., & Carroll, M.S. (2011). Copy of Noisy (spin) neighbors of a solid state (spin) qubit [Conference]. https://www.osti.gov/biblio/1140901

Rahman, R., Nielsen, E., Muller, R.P., Carroll, M.S., & Carroll, M.S. (2011). Atomistic simulations of valley splitting in silicon quantum dots in the presence of disorder [Conference]. https://www.osti.gov/biblio/1108825

Lin, P.T., Shadid, J.N., & Shadid, J.N. (2011). Large-Scale Parallel Stabilized Finite Element Simulation of the Drift-Diffusion Model for Semiconductor Devices [Conference]. https://www.osti.gov/biblio/1108780

Schultz, P.A. (2011). First Principles Defect Chemistry for Modeling Irradiated GaAs and III-V's [Conference]. https://www.osti.gov/biblio/1108804

Hough, P.D., Swiler, L.P., & Swiler, L.P. (2011). Mixed Variable Surrogate Models for Engineering Analysis [Conference]. https://www.osti.gov/biblio/1108818

Ray, J., van Bloemen Waanders, B.G., McKenna, S.A., & McKenna, S.A. (2011). Multiscale spatial models for representing anthropogenic CO2 emissions [Conference]. https://www.osti.gov/biblio/1120629

Pinar, A., Watson, J., Hough, P.D., Siirola, J.D., Gray, G.A., & Gray, G.A. (2011). Computational Challenges in Optimization for Electrical Grid Operations and Planning [Conference]. https://www.osti.gov/biblio/1108806

Gaudioso, J.M., Pinard, W.J., & Pinard, W.J. (2011). Overview of Current Biorisk Training and Capacity Building Activities [Conference]. https://www.osti.gov/biblio/1108785

Taylor, M.A. (2011). The Spectral Element Dynamical Core in the Community Climate System Model [Conference]. https://www.osti.gov/biblio/1108797

Ridzal, D., Young, J.G., Bochev, P., & Bochev, P. (2011). Optimization-based modeling with applications to transport. Part 2. The optimization algorithm [Conference]. https://www.osti.gov/biblio/1108772

Gerstenberger, A., Tuminaro, R.S., & Tuminaro, R.S. (2011). Algebraic multigrid techniques for the extended finite element method [Conference]. https://www.osti.gov/biblio/1120570

Adams, B.M., Eldred, M., Swiler, L.P., & Swiler, L.P. (2011). Managing Complexity in Simulation-Based Uncertainty Quantification [Conference]. https://www.osti.gov/biblio/1120645

Wildey, T. (2011). A Dirichlet-to-Neumann (DtN) multigrid algorithm for locally conservative methods [Conference]. https://www.osti.gov/biblio/1288632

Swiler, L.P., Urbina, A., Urbina, A., & Urbina, A. (2011). Multiple Model Inference: Calibration Selection and Prediction with Multiple Models [Conference]. https://www.osti.gov/biblio/1120608

Magyar, R.J. (2011). Exact Time-Dependent Kohn-Sham Potential for an Interacting Few-Body System [Conference]. https://www.osti.gov/biblio/1108627

Alvin, K.F. (2011). Overview of Verification Validation Uncertainty Quantification and QMU [Conference]. https://www.osti.gov/biblio/1108655

Heroux, M.A. (2011). Self-similarity of parallel machines. Parallel Computing. https://www.osti.gov/biblio/1108670

Curry, M.L., Ward, H.L., Brightwell, R.B., & Brightwell, R.B. (2011). Gibraltar RAID - 2011 R&D 100 Awards Entry Form [Presentation]. https://www.osti.gov/biblio/1671516

Gaudioso, J.M., Heegaard, E.D., & Heegaard, E.D. (2011). BioICE - Biopreparedness [Conference]. https://www.osti.gov/biblio/1120590

Murphy, R.C. (2011). Getting Ready for Hybrid Multicore Computing or On Data Movement Pico Joules and Codesign (oh my!) [Conference]. https://www.osti.gov/biblio/1108654

Murphy, R.C. (2011). Graph 500: Creating an International Benchmark (and competition!) for Data Intensive Computing [Conference]. https://www.osti.gov/biblio/1108641

Spotz, W.F. (2011). Exascale Co-design and Climate Modeling [Conference]. https://www.osti.gov/biblio/1108629

Cheng, S., Lechman, J.B., Plimpton, S.J., Grest, G.S., & Grest, G.S. (2011). Evaporation of Lennard-Jones Fluids and Evporation-Induced Nanoparticle Assembly: Molecular Dynamics Studies [Conference]. https://www.osti.gov/biblio/1108622

Niederhaus, J.H.J., Garasi, C.J., Robinson, A.C., & Robinson, A.C. (2011). Contribution to Department of Energy Office of Science DE-FOA-0000508 FY 2011 SBIR/STTR Phase II proposal titled "ALEGRA-MHD Applications to Solid Liner MTF/MIF Confinement Concepts" [Presentation]. https://www.osti.gov/biblio/1671526

Gaidamour, J., Hu, J.J., Siefert, C., Tuminaro, R.S., & Tuminaro, R.S. (2011). Designing an extensible framework for multigrid algorithm research [Conference]. https://www.osti.gov/biblio/1120626

Debenedictis, E. (2011). Comments on TA 11.1.1 Flight Computing [Conference]. https://www.osti.gov/biblio/1120616

Lofstead, G.F. (2011). Scientific Simulations are Dead! Long Live Scientific Simulations! [Conference]. https://www.osti.gov/biblio/1108532

Wilson, A.T., Dunlavy, D.M., & Dunlavy, D.M. (2011). TopicView: Visually Comparing Semantic Models [Conference]. https://www.osti.gov/biblio/1108535

Murphy, R.C. (2011). X-caliber National HPCC Conference UHPC Panel [Conference]. https://www.osti.gov/biblio/1108505

Bartlett, R., Belcourt, K., Hooper, R., Schmidt, R., & Schmidt, R. (2011). A theory manual for multi-physics code coupling in LIME. https://doi.org/10.2172/1011710

Hjalmarson, H.P., Magyar, R.J., Crozier, P., Hartman, F., & Hartman, F. (2011). Physics of intense, high energy radiation effects. https://doi.org/10.2172/1008110

Minnich, R.G., Brightwell, R.B., Kelly, S.M., Ballance, R.A., & Ballance, R.A. (2011). System Software Report from ASC/CSSE-FOUS Exascale Planning [Presentation]. https://www.osti.gov/biblio/1671729

Rohrer, B.R. (2011). An implemented architecture for feature creation and general reinforcement learning [Conference]. https://www.osti.gov/biblio/1120855

Salerno, R.M., Gaudioso, J.M., Caskey, S.A., Williams, C.V., & Williams, C.V. (2011). Laboratory Biosecurity [Presentation]. https://doi.org/10.1002/0471686786.ebd0167

Salerno, R.M., Gaudioso, J.M., Caskey, S.A., & Caskey, S.A. (2011). Biorisk Management: Summary [Presentation]. https://www.osti.gov/biblio/1671909

Salerno, R.M., Gaudioso, J.M., Caskey, S.A., & Caskey, S.A. (2011). Biorisk Mitigation [Presentation]. https://www.osti.gov/biblio/1671910

Salerno, R.M., Gaudioso, J.M., Caskey, S.A., Williams, C.V., & Williams, C.V. (2011). Biorisk Assessment [Presentation]. https://www.osti.gov/biblio/1671686

Salerno, R.M., Gaudioso, J.M., Caskey, S.A., Williams, C.V., & Williams, C.V. (2011). Biorisk Management [Presentation]. https://www.osti.gov/biblio/1671687

Gaidamour, J., Tuminaro, R.S., Siefert, C., & Siefert, C. (2011). A General AMG Strategy for Addressing the Near Null-space Based on Energy Minimization [Conference]. https://www.osti.gov/biblio/1120893

Crozier, P., Magyar, R.J., & Magyar, R.J. (2011). A two-temperature model of radiation damage in a-quartz [Conference]. https://www.osti.gov/biblio/1109383

Creighton, J., Pawlowski, R., Coltrin, M.E., Figiel, J.J., & Figiel, J.J. (2011). The Search for True Chemicurrent from Catalytic Nanodiodes [Presentation]. https://www.osti.gov/biblio/1671695

Edwards, H.C., Coffey, T.S., Sunderland, D., Williams, A.B., & Williams, A.B. (2011). STK-mesh tutorial minisymposium [Conference]. https://www.osti.gov/biblio/1289949

Freeze, G., Arguello, J.G., Bouchard, J.F., Criscenti, L., Dewers, T., Edwards, H.C., Sassani, D., Schultz, P.A., Wang, Y., & Wang, Y. (2011). Nuclear Energy Advanced Modeling and Simulation (NEAMS) Waste Integrated Performance and Safety Codes (IPSC) : FY10 development and integration. https://doi.org/10.2172/1011208