Publications

Scholten, T.L. (2015). Inaccuracy in Quantum State Tomography - What is To Be Done? [PowerPoint] [Conference Poster]. https://www.osti.gov/biblio/1338040

Ward, D.K., Zhou, X., Bartelt, N.C., Foster, M.E., Schultz, P.A., Wang, B.M., McCarty, K.F., & McCarty, K.F. (2015). Quantum mechanical studies of carbon structures. https://doi.org/10.2172/1227805

Robinson, A.C., Niederhaus, J.H.J., & Niederhaus, J.H.J. (2015). Statistically rigorous spatial variation and uncertainty quantification in ALEGRA [Presentation]. https://www.osti.gov/biblio/1334578

Gao, X., Mamaluy, D., Mickel, P.R., Marinella, M., & Marinella, M. (2015). Three-Dimensional Fully-Coupled Electrical and Thermal Transport Model of Dynamic Switching in Oxide Memristors [Conference Poster]. https://doi.org/10.1149/06905.0183ecst

Silling, S.A., Bobaru, F., Wang, Y., & Wang, Y. (2015). Three-Dimensional Simulation of Fractographic Features with Multiscale Peridynamics [Conference Poster]. https://www.osti.gov/biblio/1334070

Demeshko, I., Heroux, M.A., Salinger, A.G., & Salinger, A.G. (2015). Addressing sustainability and performance portability challenges in Albany [Conference Poster]. https://www.osti.gov/biblio/1334071

Moore, C.H., Moore, S.G., Hopkins, M.M., Boerner, J., Cartwright, K.L., Biedermann, L.B., & Biedermann, L.B. (2015). Timestep Constraints for Accurate PIC-DSMC Simulation of Breakdown: From Arc Initiation to Stable Arcs [Conference Poster]. https://www.osti.gov/biblio/1333479

Lin, P.T., Shadid, J.N., & Shadid, J.N. (2015). Performance of smoothers for algebraic multigrid preconditioners for finite element variational multiscale incompressible magnetohydrodynamics [Conference Poster]. https://www.osti.gov/biblio/1333482

Trott, C.R., Thompson, A.P., Plimpton, S.J., Moore, S.G., Shan, T., & Shan, T. (2015). Maintainability and Performance for LAMMPS [Conference Poster]. https://www.osti.gov/biblio/1338008

Ray, J., Lefantzi, S., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2015). Bayesian inference of the permeability field of a binary medium [Presentation]. https://www.osti.gov/biblio/1333266

Moore, S.G., Moore, C.H., Boerner, J., & Boerner, J. (2015). 2D vs 1D: A PIC/DSMC Model of Breakdown in Triggered Vacuum Spark Gaps [Conference Poster]. https://www.osti.gov/biblio/1333267

Wilson, A.T. (2015). Finding Needles in Airborne Haystacks [Presentation]. https://www.osti.gov/biblio/1332872

Wilson, A.T., Forsythe, J.C., Silva, A.R., Hopkins, S.E., & Hopkins, S.E. (2015). Facilitation of Forensic Analysis Using a Narrative Template [Conference Poster]. https://www.osti.gov/biblio/1332873

Rothganger, F., Follett, D., Naegle, J.H., Wang, F., Donaldson, J.W., Vineyard, C.M., James, C.D., Aimone, J.B., & Aimone, J.B. (2015). Neural circuit models on emulated hardware [Conference Poster]. https://www.osti.gov/biblio/1332881

Koniges, A., Candadai, J.A., Kaiser, H., Huck, K., Kemp, J., Heller, T., Anderson, M., Lumsdaine, A., Serio, A., Wolf, M., Lelbach, B., Brightwell, R.B., Sterling, T., & Sterling, T. (2015). HPX Applications and Performance Adaptation [Conference Poster]. https://www.osti.gov/biblio/1332791

Spotz, W.F. (2015). Aeras: A Next-Generation Global Atmosphere Model [Conference Poster]. https://doi.org/10.1016/j.procs.2015.05.478

Spotz, W.F. (2015). Aeras: A Next-Generation Global Atmosphere Model [Conference Poster]. https://doi.org/10.1016/j.procs.2015.05.478

Littlewood, D.J. (2015). Roadmap for Peridynamic Software Implementation. https://doi.org/10.2172/1226115

Woodbridge, D.M., Bachman, W.B., Wilson, A.T., Goldstein, R., & Goldstein, R. (2015). Time Series Discord Detection in Medical Data using a Parallel Relational Database [Conference Poster]. https://doi.org/10.1109/BIBM.2015.7359885

Curry, M.L. (2015). An Overview of Sirocco [Presentation]. https://www.osti.gov/biblio/1514222

Trott, C.R., Edwards, H.C., & Edwards, H.C. (2015). Kokkos: Enabling Performance Portablility [Conference Poster]. https://www.osti.gov/biblio/1530664

Hammond, S. (2015). SoC4HPC - An On-Ramp for Applications at Exascale [Conference Poster]. https://www.osti.gov/biblio/1332048

Booth, J.D., Rajamanickam, S., Thornquist, H., & Thornquist, H. (2015). Basker: A Threaded Sparse LU Factorization Utilizing Hierarchical Parallelism and Data Layouts [Conference Poster]. https://doi.org/10.1109/IPDPSW.2016.92

Fekete, S., Huang, K., Mitchell, J.S.B., Parekh, O., Phillips, C.A., & Phillips, C.A. (2015). Geometric hitting set for segments of few orientations [Conference Poster]. https://doi.org/10.1007/978-3-319-28684-6_13

Mitchell, J.A. (2015). Ordinary Isotropic Constitutive Models for Peridynamics [Conference Poster]. https://www.osti.gov/biblio/1506748

Costa, T., Bond, S.D., Littlewood, D.J., Moore, S.G., & Moore, S.G. (2015). Peridynamic Multiscale Finite Element Method [Conference Poster]. https://www.osti.gov/biblio/1506749

Kouri, D.P. (2015). A Data-Driven Approach to PDE-Constrained Optimization under Uncertainty [Presentation]. https://www.osti.gov/biblio/1514225

Bradley, A.M. (2015). HTS: A Multithreaded Direct Sparse Triangular Solver Combining Level Scheduling and Recursive Blocking [Conference Poster]. https://www.osti.gov/biblio/1332637

Brightwell, R.B. (2015). Hardware Support for OS/Runtime and Interconnect [Conference Poster]. https://www.osti.gov/biblio/1576133

Siirola, J.D. (2015). Developing practical stochastic programming approaches to power grid operations and planning [Presentation]. https://www.osti.gov/biblio/1576136

Brandt, J.M., Devine, K., Gentile, A.C., & Gentile, A.C. (2015). Infrastructure for In Situ System Monitoring and Application Data Analysis [Conference Poster]. https://doi.org/10.1145/2828612.2828621

Tracy, L.A., Luhman, D.R., Carr, S.M., Borchardt, J., Bishop, N., Ten Eyck, G.A., Pluym, T., Wendt, J.R., Witzel, W., Blume-Kohout, R.J., Nielsen, E., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2015). ESR Experiments on a Single Donor Electron in Isotopically Enriched Silicon [Presentation]. https://www.osti.gov/biblio/1576150

Kim, K., Rajamanickam, S., Edwards, H.C., Olivier, S.L., Stelle, G.W., & Stelle, G.W. (2015). Task-parallel Sparse Incomplete Cholesky Factorization using Kokkos Portable APIs [Conference Poster]. https://www.osti.gov/biblio/1530666

Lehoucq, R.B., Garavito-Gazon, C., & Garavito-Gazon, C. (2015). Nonlocal Constitutive Relations [Conference Poster]. https://www.osti.gov/biblio/1530667

Lehoucq, R.B., Turner, D.Z., Garavito, C., & Garavito, C. (2015). PDE constrained optimization for digital image correlation [Conference Poster]. https://www.osti.gov/biblio/1576153

Bond, S.D., Costa, T., & Costa, T. (2015). A Finite Element Method for Nonlocal Mechanics [Conference Poster]. https://www.osti.gov/biblio/1332646

Devine, K. (2015). Meshes Load Balancing Graph Algorithms [Conference Poster]. https://www.osti.gov/biblio/1332651

Rodrigues, A., Jayaraj, J., Hammond, S., Voskuilen, G.R., & Voskuilen, G.R. (2015). The Potentials and Perils of Multi-Level Memory [Conference Poster]. https://www.osti.gov/biblio/1332655

Silling, S.A. (2015). Predictivity in fracture modeling [Conference Poster]. https://www.osti.gov/biblio/1332658

Littlewood, D.J. (2015). Progress and Challenges in Computational Peridynamics [Conference Poster]. https://www.osti.gov/biblio/1332659

Wiesner, T.A., Hu, J.J., Kelley, B., Siefert, C., & Siefert, C. (2015). A new MATLAB interface to MueLu [Presentation]. https://www.osti.gov/biblio/1331844

Hu, J.J. (2015). Linear and Eigen-Solver Capability Update [Presentation]. https://www.osti.gov/biblio/1331926

Turner, D.Z. (2015). Nonlocal Digital Image Correlation [Conference Poster]. https://www.osti.gov/biblio/1331930

Rajamanickam, S., Boman, E.G., Bradley, A.M., Booth, J.D., Deveci, M., Kim, K., Dohrmann, C.R., Thornquist, H., Chow, E., Patel, A., & Patel, A. (2015). ShyLU and Thread Scalable Subdomain Solvers [Presentation]. https://www.osti.gov/biblio/1514218

Rajamanickam, S., Boman, E.G., Bradley, A.M., Booth, J.D., Kim, K., Deveci, M., & Deveci, M. (2015). ShyLU: On node Solvers and Kokkos-Kernels [Presentation]. https://www.osti.gov/biblio/1514219

Rajamanickam, S., Yamazaki, I., Boman, E.G., Hoemmen, M.F., Heroux, M.A., Tomov, S., Dongarra, J., & Dongarra, J. (2015). Preconditioning Communication-Avoiding Krylov Methods [Conference Poster]. https://www.osti.gov/biblio/1530668

Rajamanickam, S. (2015). Communication-Avoiding Preconditioners for s-step Krylov Methods [Presentation]. https://www.osti.gov/biblio/1331949

Turner, D.Z. (2015). Exascale DIC using Kokkos [Conference Poster]. https://www.osti.gov/biblio/1331952

Gao, X., Huang, A., Peterson, K., Hennigan, G., Musson, L.C., Bochev, P., & Bochev, P. (2015). Implementation of Different Stabilization Schemes in Charon Using Trilinos/Panzer [Conference Poster]. https://www.osti.gov/biblio/1331955

Voskuilen, G.R. (2015). HMC and Multi-level Memory [Presentation]. https://www.osti.gov/biblio/1331965

Spotz, W.F. (2015). Cool Stuff You Can Do with PyTrilinos DistArray and Jupiter [Conference Poster]. https://www.osti.gov/biblio/1331938

Ryan-Anderson, C., Landahl, A.J., Metodi, T.S., Moussa, J.E., & Moussa, J.E. (2015). Quantum Error Correcting Code Simulation [Presentation]. https://www.osti.gov/biblio/1331940

Jamieson, K., Davis, W.L., & Davis, W.L. (2015). Active Learning in the Era of Big Data. https://doi.org/10.2172/1225849

Booth, J.D., Rajamanickam, S., Boman, E.G., & Boman, E.G. (2015). Basker: A Scalable Sparse Direct Linear Solver for Many-Core Architectures [Conference Poster]. https://www.osti.gov/biblio/1331879

Shan, T. (2015). Reactive molecular dynamics simulations in LAMMPS [Conference Poster]. https://www.osti.gov/biblio/1331412

Stracuzzi, D.J., Gunning, D., & Gunning, D. (2015). Introduction to the Special Issue on Innovative Applications of Artificial Intelligence 2014. AI Magazine, 36(3), pp. 3-4. https://doi.org/10.1609/aimag.v36i3.2598

Rothganger, F., Evans, B.R., Aimone, J.B., Debenedictis, E., & Debenedictis, E. (2015). Training neural hardware with noisy components [Conference Poster]. Proceedings of the International Joint Conference on Neural Networks. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84951124061&origin=inward

Vineyard, C.M., Verzi, S.J., James, C.D., Aimone, J.B., Heileman, G.L., & Heileman, G.L. (2015). Repeated play of the SVM game as a means of adaptive classification [Conference Poster]. Proceedings of the International Joint Conference on Neural Networks. https://doi.org/10.1109/IJCNN.2015.7280729

Tikare, V., Weck, P.F., Mitchell, J.A., & Mitchell, J.A. (2015). Modeling of hydride precipitation and re-orientation. https://doi.org/10.2172/1332940

Jones, S.T., Outkin, A.V., Gearhart, J.L., Hobbs, J., Siirola, J.D., Phillips, C.A., Verzi, S.J., Tauritz, D., Mulder, S.A., Naugle, A.B., & Naugle, A.B. (2015). Evaluating Moving Target Defense with PLADD. https://doi.org/10.2172/1222986

Gao, X., Mamaluy, D., Mickel, P.R., Marinella, M., & Marinella, M. (2015). Three-dimensional fully-coupled electrical and thermal transport model of dynamic switching in oxide memristors. ECS Transactions (Online), 69(5), pp. 183-193. https://doi.org/10.1149/06905.0183ecst

Moore, B., Voskuilen, G.R., Rodrigues, A., Hammond, S., Hemmert, K.S., & Hemmert, K.S. (2015). Structural Simulation Toolkit. Lunch & Learn. https://doi.org/10.2172/1227913

Czuchlewski, K.R., Hart, W.E., & Hart, W.E. (2015). PANTHER. Pattern ANalytics To support High-performance Exploitation and Reasoning. https://doi.org/10.2172/1228822

Shulenburger, L., Baczewski, A.D., Guan, J., Zhu, Z., Tomanek, D., & Tomanek, D. (2015). Is few-layer phosphorene a true van der Waals Material? [Conference Poster]. https://www.osti.gov/biblio/1324243

Siirola, J.D. (2015). Pyomo: expressing mathematical programs and developing optimization solutions in Python [Conference Poster]. https://www.osti.gov/biblio/1323032

Shan, T. (2015). Reactive molecular dynamics simulations of hot spot growth in shocked energetic materials CCC8-133. https://doi.org/10.2172/1214250

Phipps, E.T., Red-Horse, J.R., Wildey, T., Constantine, P., Ghanem, R., Arnst, M., & Arnst, M. (2015). Stochastic Dimension Reduction of Multiphysics Systems through Measure Transformation [Conference Poster]. https://www.osti.gov/biblio/1321810

Valicka, C.G., Hart, W.E., Bachman, W.B., Mitchell, S.A., Pollard, E.L., Zou, S., Rowe, S., & Rowe, S. (2015). Mixed-Integer Formulations for Constellation Scheduling [Conference Poster]. https://www.osti.gov/biblio/1321814

Wildey, T., Shadid, J.N., Cyr, E.C., Jakeman, J.D., Butler, T., & Butler, T. (2015). Adjoint-Based a Posteriori Error Estimation and Uncertainty Quantification for Transient Nonlinear Problems with Discontinuous Solutions [Conference Poster]. https://www.osti.gov/biblio/1323036

Shan, T., Thompson, A.P., & Thompson, A.P. (2015). Nanostructure-enhanced Chemical Reactivity and Detonation in Energetic Materials. https://doi.org/10.2172/1214609

Shan, T., Thompson, A.P., & Thompson, A.P. (2015). Nanostructure-enhanced Chemical Reactivity and Detonation in Energetic Materials: End of Year Summary. https://doi.org/10.2172/1214610

Devine, K. (2015). The Zoltan2 Toolkit: Partitioning Task Placement Coloring and Ordering [Presentation]. https://www.osti.gov/biblio/1324417

Deveci, M., Devine, K., Leung, V.J., Prokopenko, A., Rajamanickam, S., & Rajamanickam, S. (2015). Architecture-aware Task Placement [Presentation]. https://www.osti.gov/biblio/1324418

Hammond, S. (2015). Tools for Next Generation Platforms: Multicore Assembly Working Group [Presentation]. https://www.osti.gov/biblio/1324424

Gallis, M.A., Koehler, T.P., Torczynski, J.R., Plimpton, S.J., & Plimpton, S.J. (2015). Direct Simulation Monte Carlo Investigation of the Rayleigh-Taylor Instability [Conference Poster]. https://doi.org/10.1103/PhysRevFluids.1.043403

Koehler, T.P., Gallis, M.A., Torczynski, J.R., Plimpton, S.J., & Plimpton, S.J. (2015). Direct Simulation Monte Carlo Investigation of the Richtmyer-Meshkov Instability [Conference Poster]. https://www.osti.gov/biblio/1324601

Vaughan, C.T. (2015). Enabling Tractable Exploration of the Performance of Adaptive Mesh Refinement [Conference Poster]. https://doi.org/10.1109/CLUSTER.2015.129

Cartwright, K.L., Radtke, G.A., Cyr, E.C., & Cyr, E.C. (2015). Uncertainty Estimation Applied to Verification and Validation (V&V) [Conference Poster]. https://www.osti.gov/biblio/1506761

Plimpton, S.J., Gallis, M.A., & Gallis, M.A. (2015). Adaptive Gridding in Parallel with the SPARTA DSMC Code [Conference Poster]. https://www.osti.gov/biblio/1506762

Magyar, R.J. (2015). Time-Dependent Density Functional Calculations for Argon-Argon Cross-Sections [Conference Poster]. https://www.osti.gov/biblio/1325521

Hastings, E., Rincon-Cruz, D., Spehlmann, M., Meyers, S., Xu, A., Bunde, D., Leung, V.J., & Leung, V.J. (2015). Comparing global link arrangements for Dragonfly networks [Presentation]. https://doi.org/10.1109/CLUSTER.2015.57

Moreland, K. (2015). The ParaView Tutorial Slides (Version 4.4) [Presentation]. https://www.osti.gov/biblio/1531115

Munn, S.J. (2015). Marching Cubes Mantevo Miniapp [Presentation]. https://www.osti.gov/biblio/1325530

Dosanjh, M.G.F., Grant, R., Bridges, P.G., Brightwell, R.B., & Brightwell, R.B. (2015). Re-evaluating Network Onload vs. Offload for the Many-Core Era [Conference Poster]. https://doi.org/10.1109/CLUSTER.2015.55

Trott, C.R., Hammond, S., Dinge, D., Lin, P.T., Vaughan, C.T., Cook, J., Rajan, M., Edwards, H.C., Hoekstra, R.J., & Hoekstra, R.J. (2015). ASC Trilab L2 Codesign Milestone 2015. https://doi.org/10.2172/1221176

Kroeger, T., Xu, H., Donoghue, N.P., Hahn, B., Zage, D.J., & Zage, D.J. (2015). Track Network Events with Write Optimized Data Structures [Conference Poster]. https://www.osti.gov/biblio/1325904

Bartelt, N.C., McCarty, K.F., Foster, M.E., Schultz, P.A., Zhou, X., Ward, D.K., & Ward, D.K. (2015). Predicting growth of graphene nanostructures using high-fidelity atomistic simulations. https://doi.org/10.2172/1221517

Mitchell, S.A., Ebeida, M., Romero, V., Swiler, L.P., Rushdi, A.A., Abdelkader, A., & Abdelkader, A. (2015). Efficient Probability of Failure Calculations for QMU using Computational Geometry LDRD 13-0144 Final Report. https://doi.org/10.2172/1221522

Silling, S.A. (2015). Peridynamics: What it is what it does [Presentation]. https://www.osti.gov/biblio/1326202

Jakeman, J.D., Chen, Y., Xiu, D., Gittelson, C., & Gittelson, C. (2015). Dimension reduction for PDE using local Karhunen Loeve expansions. https://doi.org/10.2172/1221524

Littlewood, D.J., Silling, S.A., Mitchell, J.A., Seleson, P.D., Bond, S.D., Parks, M.L., Turner, D.Z., Burnett, D.J., Ostien, J.T., Gunzburger, M., & Gunzburger, M. (2015). Strong Local-Nonlocal Coupling for Integrated Fracture Modeling. https://doi.org/10.2172/1221526

Wildey, T., Jakeman, J.D., & Jakeman, J.D. (2015). Adaptive Bayesian Inference for Prediction. https://doi.org/10.2172/1221574

Hammond, S. (2015). Towards Accurate Application Characterization for Exascale (APEX). https://doi.org/10.2172/1221578

Hastings, E., Rincon-Cruz, D., Spehlmann, M., Meyers, S., Xu, A., Bunde, D.P., Leung, V.J., & Leung, V.J. (2015). Comparing global link arrangements for Dragonfly networks [Presentation]. https://doi.org/10.1109/CLUSTER.2015.57

Bielejec, E.S., Singh, M., Pacheco, J.L., Jacobson, N.T., Bachman, W.B., Nielsen, E., Muller, R.P., Luhman, D.R., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2015). fabrication of counted donor devices using top-down ion implantation [Conference Poster]. https://www.osti.gov/biblio/1326572

Stracuzzi, D.J., Brost, R., Chen, M.G., Malinas, R., Peterson, M.G., Phillips, C.A., Robinson, D.G., Woodbridge, D.M., & Woodbridge, D.M. (2015). Preliminary Results on Uncertainty Quantification for Pattern Analytics. https://doi.org/10.2172/1221712

Bachman, W.B. (2015). From Facility to Component Level - A High Performance Computing Power Application Programming Interface [Conference Poster]. https://www.osti.gov/biblio/1326778

Bachman, W.B., Wilson, A.T., Valicka, C.G., Kegelmeyer, W.P., Shead, T.M., Czuchlewski, K.R., Newton, B.D., & Newton, B.D. (2015). PANTHER. Trajectory Analysis. https://doi.org/10.2172/1221864

Edwards, H.C. (2015). Kokkos: Enabling Productivity and Performance Portability Across Next Generation Platforms [Presentation]. https://www.osti.gov/biblio/1514178

Rodrigues, A., Jagan, J., Hammond, S., Voskuilen, G.R., & Voskuilen, G.R. (2015). The Potentials and Perils of Multi-Level Memory [Conference Poster]. https://www.osti.gov/biblio/1327241