Publications

Deveci, M., Rajamanickam, S., Devine, K., Catalyurek, U.V., & Catalyurek, U.V. (2016). Multi-Jagged: A Scalable Parallel Spatial Partitioning Algorithm. IEEE Transactions on Parallel and Distributed Systems, 27(3), pp. 803-817. https://doi.org/10.1109/TPDS.2015.2412545

Schultz, P.A. (2016). Discriminating a deep gallium antisite defect from shallow acceptors in GaAs using supercell calculations. Physical Review B, 93(12). https://doi.org/10.1103/PhysRevB.93.125201

Staid, A., Verhulst, C., Guikema, S.D., & Guikema, S.D. (2016). Data mining to assess power output in non-uniform onshore wind farms [Conference Poster]. https://www.osti.gov/biblio/1422151

Bachman, W.B., Wilson, A.T., Valicka, C.G., Newton, B., & Newton, B. (2016). Trajectory prediction using feature vectors [Conference Poster]. https://www.osti.gov/biblio/1422158

Stracuzzi, D.J., Robinson, D.G., Peterson, M.G., Dauphin, S.M., Chen, M.G., Riley, R.M., & Riley, R.M. (2016). Multimodal data integration under uncertainty [Conference Poster]. https://www.osti.gov/biblio/1422161

Watson, J., Singh, B., & Singh, B. (2016). Probabilistic Forecasting Stochastic Optimization & The Progressive Hedging Algorithm [Conference Poster]. https://www.osti.gov/biblio/1346110

Adams, B.M., Stephens, J.A., & Stephens, J.A. (2016). Dakota: Algorithms for Design Exploration and Simulation Credibility; Data Analysis Capabilities [Conference Poster]. https://www.osti.gov/biblio/1346113

Bachman, W.B., Jacobson, N.T., Muller, R.P., Nielsen, E., Carr, S.M., Carroll, M.S., Curry, M., Harvey-Collard, P., Jock, R.M., Rudolph, M., & Rudolph, M. (2016). Full Controllability of a Singlet-Triplet Qubit Coupled to a Nuclear Spin Qubit [Conference Poster]. https://www.osti.gov/biblio/1346119

Abbott, R.G. (2016). Modeling behavior data in security and defense applications [Conference Poster]. https://www.osti.gov/biblio/1422140

Tracy, L.A., Luhman, D.R., Carr, S.M., Borchardt, J., Bishop, N.C., Ten Eyck, G.A., Pluym, T., Wendt, J.R., Witzel, W., Blume-Kohout, R.J., Nielsen, E., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2016). ESR Experiments on a Single Donor Electron in Isotopically Enriched Silicon [Conference Poster]. https://www.osti.gov/biblio/1346320

Tracy, L.A., Luhman, D.R., Carr, S.M., Borchardt, J., Bishop, N.C., Ten Eyck, G.A., Pluym, T., Wendt, J.R., Witzel, W., Blume-Kohout, R.J., Nielsen, E., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2016). ESR Experiments on a Single Donor Electron in Isotopically Enriched Silicon [Presentation]. https://www.osti.gov/biblio/1346321

Rudinger, K.M. (2016). Certifying Fault Tolerance with Gate Set Tomography [Presentation]. https://www.osti.gov/biblio/1346322

Teranishi, K., Gamell, M., van der Wijngaart, R., Parashar, M., Heroux, M.A., & Heroux, M.A. (2016). Fenix: An Online Failure Recovery Library for MPI applications [Presentation]. https://www.osti.gov/biblio/1346325

Silling, S.A. (2016). Peridynamic modeling of impact damage and erosion [Presentation]. https://www.osti.gov/biblio/1346449

Severa, W., Parekh, O., James, C.D., Aimone, J.B., & Aimone, J.B. (2016). A Combinatorial Model of Dentate Gyrus Sparse Coding and Pattern Separation [PowerPoint] [Conference Poster]. https://www.osti.gov/biblio/1346453

Silling, S.A. (2016). Using peridynamics to understand fracture [Presentation]. https://www.osti.gov/biblio/1346455

Aimone, J.B. (2016). Modulating Neural Computation [Conference Poster]. https://www.osti.gov/biblio/1346463

Agarwal, S., Plimpton, S.J., Parekh, O., Hsia, A.W., Quach, T.T., Hughart, D.R., Richter, I., Debenedictis, E., James, C.D., Aimone, J.B., Marinella, M., & Marinella, M. (2016). Acceleration of Neural Algorithms using Nanoelectronic Resistive Memory Crossbars [Conference Poster]. https://www.osti.gov/biblio/1346466

Jacobson, N.T., Harvey-Collard, P., Baczewski, A.D., Bachman, W.B., Rudolph, M., Nielsen, E., Muller, R.P., Carroll, M.S., & Carroll, M.S. (2016). All-electrical control of a singlet/triplet qubit coupled to a single nuclear spin [Conference Poster]. https://www.osti.gov/biblio/1346489

Frees, A., Bachman, W.B., Mehl, S., Friesen, M., Coppersmith, S.N., & Coppersmith, S.N. (2016). Towards optimizing two-qubit operations in three-electron double quantum dots [Conference Poster]. https://www.osti.gov/biblio/1346495

Bachman, W.B., Harvey-Collard, P., Jacobson, N.T., Baczewski, A.D., Nielsen, E., Maurer, L.N., Montano, I., Rudolph, M., Carroll, M.S., Muller, R.P., & Muller, R.P. (2016). Predicting the valley splitting of silicon quantum dots directly from a device layout [Conference Poster]. https://www.osti.gov/biblio/1346496

Foote, R.H., Ward, D.R., Prance, J.R., Bachman, W.B., Nielsen, E., Throgrimsson, B., Savage, D.E., Saraiva, A.L., Friesen, M., Coppersmith, S.N., Eriksson, M.A., & Eriksson, M.A. (2016). Transport through an impurity tunnel coupled to a Si/SiGe quantum dot [Conference Poster]. https://doi.org/10.1063/1.4930909

Magyar, R.J. (2016). Finding Your Way in Computational Electronic Structure [Conference Poster]. https://www.osti.gov/biblio/1346785

Wiesner, T.A. (2016). Algebraic multigrid for contact problems in saddle point formulation [Conference Poster]. https://www.osti.gov/biblio/1346892

Landahl, A.J. (2016). APS March Meeting Invited Talk: Universal fault-tolerant adiabatic quantum computing with quantum dots or donors [Conference Poster]. https://www.osti.gov/biblio/1346900

Witzel, W., Rudinger, K.M., Sarovar, M., Carr, R., & Carr, R. (2016). Formal Computer Validation of the Quantum Phase Estimation Algorithm [Conference Poster]. https://www.osti.gov/biblio/1348125

Hastings, E., Rincon-Cruz, D., Spehlmann, M., Meyers, S., Xu, A., Bunde, D., Leung, V.J., & Leung, V.J. (2016). Comparing global link arrangements for Dragonfly networks [Conference Poster]. https://doi.org/10.1109/CLUSTER.2015.57

Wolf, M., Eisenhauer, G., Widener, P., & Widener, P. (2016). Rethinking streaming system construction for next-generation collaborative science [Conference Poster]. https://www.osti.gov/biblio/1347479

Klinvex, A.M., Wolf, M., Dunlavy, D.M., & Dunlavy, D.M. (2016). Clustering network data through effective use of eigensolvers and hypergraph models [Conference Poster]. https://www.osti.gov/biblio/1347490

Dosanjh, M.G.F., Groves, T.L., Grant, R., Brightwell, R.B., Bridges, P.G., & Bridges, P.G. (2016). RMA-MT: A Benchmark Suite for Assessing MPI Multi-threaded RMA Performance [Conference Poster]. https://doi.org/10.1109/CCGrid.2016.84

Moussa, J.E. (2016). Convex lower bounds for free energy minimization [Conference Poster]. https://www.osti.gov/biblio/1348141

Mattsson, T., Lemke, R.W., Bachman, W.B., Dalton, D., Brown, J.L., Tomlinson, K., Robertson, G.K., Knudson, M.D., Harding, E.C., Mattsson, A.E., Carpenter, J.H., Drake, R.R., Cochrane, K.R., Blue, B.E., Robinson, A.C., & Robinson, A.C. (2016). Probing off-Hugoniot states in Ta Cu and Al to 10 Mbar compression with magnetically driven liner implosions [Conference Poster]. https://www.osti.gov/biblio/1422061

Kuberry, P., Bochev, P., & Bochev, P. (2016). An optimization-based approach to mesh tying and transmission problems [Conference Poster]. https://www.osti.gov/biblio/1422058

Siefert, C. (2016). Won't you be my neighbor? A look at neighbor discovery for algebraic multigrid [Conference Poster]. https://www.osti.gov/biblio/1422056

Agarwal, S., Parekh, O., Quach, T.T., Debenedictis, E., James, C.D., Marinella, M., Aimone, J.B., & Aimone, J.B. (2016). Energy Scaling Advantages of Resistive Memory Crossbar Based Computation [Conference Poster]. https://www.osti.gov/biblio/1422171

Hendrickson, B.A. (2016). Lessons (I) Learned at NICE16 [Conference Poster]. https://www.osti.gov/biblio/1422181

Hendrickson, B.A. (2016). Opportunities for Neural-Inspired Ideas in High Performance Computing [Conference Poster]. https://www.osti.gov/biblio/1422177

Tuminaro, R.S., Noble, D.R., Prokopenko, A., & Prokopenko, A. (2016). A Quasi-Algebraic Multigrid Approach to PDE systems with Variable Degrees-of-Freedom Per Node [Conference Poster]. https://www.osti.gov/biblio/1422052

Plimpton, S.J. (2016). Coarse-graining to the meso and continuum scales with molecular-dynamics-like models [Conference Poster]. https://www.osti.gov/biblio/1348096

Phillips, E., Shadid, J.N., Cyr, E.C., & Cyr, E.C. (2016). Block Solvers for Implicit Electromagnetic and Plasma Simulations [Conference Poster]. https://www.osti.gov/biblio/1348097

Vogler, T.J., Behzadinasab, M., Rahman, R., Foster, J.T., & Foster, J.T. (2016). Perturbation Decay Experiments on Granular Materials [Conference Poster]. https://www.osti.gov/biblio/1348102

Boman, E.G., Deveci, M., Rajamanickam, S., & Rajamanickam, S. (2016). Parallel Preconditioners and Solvers for Modern Architectures [Conference Poster]. https://www.osti.gov/biblio/1348103

Phipps, E.T., D'Elia, M., Edwards, H.C., Hoemmen, M.F., Hu, J.J., Rajamanickam, S., & Rajamanickam, S. (2016). Embedded Ensemble Propagation for Improving Performance Portability and Scalability of Uncertainty Quantification on Emerging Computational Architectures [Conference Poster]. https://www.osti.gov/biblio/1348104

van Bloemen Waanders, B.G., Wildey, T., Seidl, D.T., Li, H., & Li, H. (2016). Multiscale Optimization Under Uncertainty [Conference Poster]. https://www.osti.gov/biblio/1348106

Oden, J.T., Maupin, K.A., Faghihi, D., & Faghihi, D. (2016). Model Selection Under Uncertainty: Coarse-Graining Atomistic Models [Conference Poster]. https://www.osti.gov/biblio/1364798

Wendt, J.D., Field, R.V., Garcia, D., Quach, T.T., Wells, R., Zage, D.J., Phillips, C.A., Pinar, A., Soundarajan, S., & Soundarajan, S. (2016). Social-Media Network Collection Problems [Conference Poster]. https://www.osti.gov/biblio/1364805

Shulenburger, L., Baczewski, A.D., Desjarlais, M.P., Seagle, C.T., & Seagle, C.T. (2016). Highly Accurate Calculations of the Phase Diagram of Cold Lithium [Conference Poster]. https://www.osti.gov/biblio/1364813

Prokopenko, A., Lin, P.T., Shadid, J.N., Hu, J.J., & Hu, J.J. (2016). Speeding up multi-physics simulations through reuse of multigrid components [Conference Poster]. https://www.osti.gov/biblio/1364816

von Winckel, G., Cyr, E.C., Kouri, D.P., Ridzal, D., Gardiner, T.A., Shadid, J.N., & Shadid, J.N. (2016). Reduced and Full Space Methods in Topology Optimization: Applications in Linear Elasticity and Electrical Conduction [Conference Poster]. https://www.osti.gov/biblio/1364862

Trott, C.R., Edwards, H.C., Ellingwood, N.D., Hammond, S., Deveci, M., Boman, E.G., Bradley, A.M., Hoemmen, M.F., Rajamanickam, S., & Rajamanickam, S. (2016). Performance Portability for Linear Algebra with Kokkos [Conference Poster]. https://www.osti.gov/biblio/1364826

Schultz, P.A. (2016). Discriminating a deep defect from shallow acceptors in supercell calculations: Gallium antisite in GaAs [Conference Poster]. https://doi.org/10.1103/PhysRevB.93.125201

Gearhart, J.L., Hobbs, J., Jones, S.T., Mulder, S.A., Naugle, A.B., Outkin, A.V., Phillips, C.A., Siirola, J.D., Tauritz, D., Verzi, S.J., & Verzi, S.J. (2016). A new scheduling problem motivated by moving-target cyberdefense [Conference Poster]. https://www.osti.gov/biblio/1364842

Tezaur, I.K., Jakeman, J.D., Eldred, M., Perego, M., Salinger, A.G., Price, S., & Price, S. (2016). Towards Uncertainty Quantification in 21st Century Sea-Level Rise Predictions: Efficient Methods for Bayesian Calibration and Forward Propagation of Uncertainty for Land-Ice Models [Conference Poster]. https://www.osti.gov/biblio/1364846

Carlberg, K.T., Forstall, V., Tuminaro, R.S., & Tuminaro, R.S. (2016). Applying model reduction to Krylov subspace recycling [Conference Poster]. https://www.osti.gov/biblio/1364864

Hastings, E., Rincon-Cruz, D., Spehlmann, M., Meyers, S., Xu, A., Bunde, D.P., Leung, V.J., & Leung, V.J. (2016). Comparing global link arrangements for Dragonfly networks [Conference Poster]. https://doi.org/10.1109/CLUSTER.2015.57

Najm, H.N., Debusschere, B.J., Safta, C., Sargsyan, K., Oefelein, J., Lacaze, G., Eldred, M., Knio, O., Scovazzi, G., Marzouk, Y., Ghanem, R., & Ghanem, R. (2016). Uncertainty Quantification in LES Computations of Turbulent Multiphase Combustion in a Scramjet Engine [Conference Poster]. https://www.osti.gov/biblio/1530652

Schultz, P.A., Snow, C., & Snow, C. (2016). Developing mechanical properties of metal triodes for models of agig [Conference Poster]. https://www.osti.gov/biblio/1365673

Perego, M., Price, S., Stadler, G., Salinger, A.G., Tezaur, I.K., Eldred, M., Jakeman, J.D., & Jakeman, J.D. (2016). Towards Uncertainty Quantification in 21st Century SeaLevel Rise Predictions: PDE Constrained Optimization as a First Step in Bayesian Calibration and Forward Propagation [Conference Poster]. https://www.osti.gov/biblio/1366599

Perego, M., Jakeman, J.D., Price, S., Salinger, A.G., Stadler, G., Tezaur, I.K., & Tezaur, I.K. (2016). Computational Challenges in Ice Sheet Modeling [Conference Poster]. https://www.osti.gov/biblio/1366600

Spotz, W.F., Fike, J., Tezaur, I.K., Salinger, A.G., Phipps, E.T., & Phipps, E.T. (2016). Uncertainty Quantification for the Global Atmosphere Using Concurrent Samples [Conference Poster]. https://www.osti.gov/biblio/1366603

Bochev, P., Ridzal, D., & Ridzal, D. (2016). "Optimization-based additive decomposition of weakly coercive problems with applications to iterative solver design [Conference Poster]. https://www.osti.gov/biblio/1366604

Stewart, J. (2016). Science-Based Computational Modeling: New Questions New Challenges and Big Data Problems [Presentation]. https://www.osti.gov/biblio/1618233

Teranishi, K., Gmaell, M., van der Wijngarrt, R., Parashar, M., Heroux, M.A., & Heroux, M.A. (2016). Fenix/LFLR: Scalable Online Failure Recovery Library for MPI Applications [Presentation]. https://www.osti.gov/biblio/1514419

Robbins, J. (2016). Optimization-based design at SNL [Presentation]. https://www.osti.gov/biblio/1618212

Edwards, H.C., Trott, C.R., Amelang, J., & Amelang, J. (2016). Kokkos Tutorial [Conference Poster]. https://www.osti.gov/biblio/1617631

Blume-Kohout, R.J. (2016). Torture tests for small quantum computers [Conference Poster]. https://www.osti.gov/biblio/1618251

Edwards, H.C., Trott, C.R., & Trott, C.R. (2016). Kokkos: Manycore Programmability and Performance Portability [Conference Poster]. https://www.osti.gov/biblio/1366649

Hart, W.E., Watson, J., Siirola, J.D., Chen, R.L.Y., & Chen, R.L.Y. (2016). Modeling Bilevel Programs in Pyomo. https://doi.org/10.2172/1561200

Schultz, P.A., Snow, C., & Snow, C. (2016). Mechanical properties of metal dihydrides. Modelling and Simulation in Materials Science and Engineering, 24(3). https://doi.org/10.1088/0965-0393/24/3/035005

Widener, P., Levy, S.L.N., Ferreira, K., Hoefler, T., & Hoefler, T. (2016). On noise and the performance benefit of nonblocking collectives. International Journal of High Performance Computing Applications, 30(1), pp. 121-133. https://doi.org/10.1177/1094342015611952

Lehoucq, R.B., Rowe, S.T., & Rowe, S.T. (2016). A radial basis function Galerkin method for inhomogeneous nonlocal diffusion. Computer Methods in Applied Mechanics and Engineering, 299, pp. 366-380. https://doi.org/10.1016/j.cma.2015.10.021

Swiler, L.P. (2016). Approaches for representing and propagating uncertainty that will be useful for multi-scale modeling [Presentation]. https://www.osti.gov/biblio/1239361

Adams, B.M., Hough, P.D., Bauman, L.E., & Bauman, L.E. (2016). Dakota Software Training: Optimization [Presentation]. https://www.osti.gov/biblio/1239370

Trott, C.R., Edwards, H.C., Ellingwood, N.D., Hammond, S., & Hammond, S. (2016). Kokkos -- Portability Performance Productivity [PowerPoint] [Presentation]. https://www.osti.gov/biblio/1342987

Trott, C.R., Domino, S.P., Brunini, V., Lin, P.T., Agelastos, A.M., Fisher, T.C., Hammond, S., & Hammond, S. (2016). NALU Assembly ? Prototyping the NGP Transition [Presentation]. https://www.osti.gov/biblio/1342988

Hu, J.J. (2016). Recent Progress in Trilinos Linear Solvers [Presentation]. https://www.osti.gov/biblio/1342989

Rudinger, K.M., Blume-Kohout, R.J., Nielsen, E., Bachman, W.B., Maunz, P.L.W., Young, K.C., Lobser, D., & Lobser, D. (2016). Enabling fault tolerance with GST [Conference Poster]. https://www.osti.gov/biblio/1343372

Hammond, S., Dohrmann, C.R., Rajamanickam, S., & Rajamanickam, S. (2016). Dungeon Session Application: BDDC Solver Library [Presentation]. https://www.osti.gov/biblio/1343377

Lobser, D., Blain, M., Blume-Kohout, R.J., Fortier, K., Mizrahi, J., Nielsen, E., Rudinger, K.M., Sterk, J.D., Stick, D., Maunz, P.L.W., & Maunz, P.L.W. (2016). Realization of Robust High-Fidelity Gates for Single-Ion Qubits in a Surface Trap [Conference Poster]. https://www.osti.gov/biblio/1343792

Davis, W.L. (2016). Using Machine Learning in Adversarial Environments. https://doi.org/10.2172/1238101

Maunz, P.L.W., Blume-Kohout, R.J., & Blume-Kohout, R.J. (2016). High-Fidelity Two-Qubit Quantum Gates in a Scalable Surface Ion Trap [Conference Poster]. https://www.osti.gov/biblio/1343808

Brien, M.J.'., Clark, B.G., Foiles, S.M., & Foiles, S.M. (2016). Insights into the Thermal Stability of Nanocrystalline PtAu films [Conference Poster]. https://www.osti.gov/biblio/1343810

Moreland, K. (2016). XVis VTK-m and the ECP [Presentation]. https://www.osti.gov/biblio/1343811

Brien, M.J.'., Foiles, S.M., & Foiles, S.M. (2016). Implications of Molecular Dynamics descriptions of H segregation to analytical descriptions [Conference Poster]. https://www.osti.gov/biblio/1343812

Alvin, K.F., Klitsner, T., & Klitsner, T. (2016). Update on Sandia?s ASC CSSE and FOUS Programs [Presentation]. https://www.osti.gov/biblio/1514358

Adams, B.M., Hough, P.D., Stephens, J.A., & Stephens, J.A. (2016). Dakota Software Training: Uncertainty Quantification [Presentation]. https://www.osti.gov/biblio/1239352

Palaviccini, M., Turner, D.Z., Herzberg, M., & Herzberg, M. (2016). Digital Image Correlation for Performance Monitoring. https://doi.org/10.2172/1238316

Silling, S.A. (2016). Metrics for the Complexity of Material Models. https://doi.org/10.2172/1560988

Magyar, R.J., Gallis, M.A., & Gallis, M.A. (2016). Argon-Argon Cross-Sections for Supersonic and Hypersonic Flows [Conference Poster]. https://www.osti.gov/biblio/1344721

Preece, D., Silling, S.A., & Silling, S.A. (2016). Ore Loss and Dilution Studies of Surface Mineral Blasting with 3D Distinct Element Heave Models [Conference Poster]. https://www.osti.gov/biblio/1344685

Silling, S.A. (2016). Peridynamic modeling of impact damage and erosion [Presentation]. https://www.osti.gov/biblio/1344686

Hammond, S., Prokopenko, A., & Prokopenko, A. (2016). Dungeon Session Application: MueLu [Presentation]. https://www.osti.gov/biblio/1344692

Scholten, T.L. (2016). Towards a Model Selection Rule for Quantum State Tomography [Conference Poster]. https://www.osti.gov/biblio/1344699

Draelos, T.J., Miner, N.E., Cox, J.A., Lamb, C., James, C.D., Aimone, J.B., & Aimone, J.B. (2016). Neurogenic Deep Learning [Conference Poster]. https://www.osti.gov/biblio/1344833

Bachman, W.B., Baczewski, A.D., Jacobson, N.T., Muller, R.P., Nielsen, E., Harvey-Collard, P., Carroll, M.S., & Carroll, M.S. (2016). Controlling a singlet-triplet qubit coupled to a nuclear spin qubit [Conference Poster]. https://www.osti.gov/biblio/1344836

Hough, P.D., Stephens, J.A., & Stephens, J.A. (2016). Dakota: Algorithms for Design Exploration and Simulation Credibility [Conference Poster]. https://www.osti.gov/biblio/1344843

Hastings, E., Rincon-Cruz, D., Spehlmann, M., Meyers, S., Xu, A., Bunde, D.P., Leung, V.J., & Leung, V.J. (2016). Comparing global link arrangements for Dragonfly networks [Presentation]. https://doi.org/10.1109/CLUSTER.2015.57

Ferreira, K. (2016). An Examination of the Impact of the Failure Distribution on Coordinated Checkpoint/Restart [Conference Poster]. https://www.osti.gov/biblio/1345094

Wildey, T., Cyr, E.C., Shadid, J.N., van Bloemen Waanders, B.G., Kouri, D.P., Bishop, J.E., Tavener, S., Butler, T., Prudhomme, S., Dawson, C., & Dawson, C. (2016). Utilizing Adjoint-Based Techniques to Improve the Accuracy and Reliability in Uncertainty Quantification [Conference Poster]. https://www.osti.gov/biblio/1345103

Moreland, K. (2016). SDAV Progress Report (2016-24) [Presentation]. https://www.osti.gov/biblio/1345299