Publications

Nicholson, B.L., Siirola, J.D., & Siirola, J.D. (2016). Optimization Modeling with Pyomo [Conference Poster]. https://www.osti.gov/biblio/1408668

Moreland, K. (2016). SDAV Progress Report (2016-11) [Presentation]. https://www.osti.gov/biblio/1408670

Najm, H.N., Debusschere, B.J., Safta, C., Sargsyan, K., Huan, X., Oefelein, J., Lacaze, G., Vane, Z.P., Eldred, M., Geraci, G., Knio, O., Sraj, I., Scovazzi, G., Colomes, O., Marzouk, Y., Zahm, O., Menhorn, F., Ghanem, R., Tsilifis, P., & Tsilifis, P. (2016). Uncertainty Quantification in LES Computations of Turbulent Multiphase Combustion in a Scramjet Engine ? ScramjetUQ ? [Conference Poster]. https://www.osti.gov/biblio/1420843

Nicholson, B.L., Siirola, J.D., Laird, C., Zavala, V., Watson, J., Biegler, L., & Biegler, L. (2016). Pyomo.dae: A Framework Enabling Rapid Development of Optimization Problems Constrained by Differential Equations [Conference Poster]. https://www.osti.gov/biblio/1420844

Sanchez, J.J., Niederhaus, J.H.J., Rodriguez, A.E., & Rodriguez, A.E. (2016). Modeling Cone Cracking in ALEGRA [Presentation]. https://www.osti.gov/biblio/1526841

Edwards, H.C., Trott, C.R., Sunderland, D., & Sunderland, D. (2016). Kokkos: Performance Portability and Productivity for C++ Applications [Conference Poster]. https://www.osti.gov/biblio/1420842

Vineyard, C.M., Aimone, J.B., Verzi, S.J., Donaldson, J.W., Smith, M.R., Rothganger, F., Follet, D.R., James, C.D., Naegle, J.H., & Naegle, J.H. (2016). A neurally inspired spiking temporal processing unit computational architecture [Conference Poster]. https://www.osti.gov/biblio/1526843

Kramer, S., Reu, P.L., Turner, D.Z., Bonk, S., & Bonk, S. (2016). A Speckle Patterning Study For Laboratory-Scale DIC Experiments [Conference Poster]. https://doi.org/10.1007/978-3-319-51439-0_8

Mazumdar, Y.C., Guba, O., Brooks, C.F., Roberts, C., van Bloemen Waanders, B.G., Nemer, M., & Nemer, M. (2016). Wireless Temperature Sensing Through Opaque Media and Enclosed Metal Vessels [Conference Poster]. https://www.osti.gov/biblio/1408946

Aimone, J.B. (2016). What are new neurons good for: both in your brain and on your cell phone? [Conference Poster]. https://www.osti.gov/biblio/1408948

Carlson, K.D., Aimone, J.B., & Aimone, J.B. (2016). Applying Uncertainty Quantification and Sensitivity Analysis to Spiking Neural Network Models of Asynchronous Irregular Firing Activity [Conference Poster]. https://www.osti.gov/biblio/1408952

Moreland, K. (2016). The ParaView Tutorial Slides (Version 5.2) [Presentation]. https://www.osti.gov/biblio/1408957

Carroll, M.S., Rochette, S., Rudolph, M., Roy, A., Curry, M., Ten Eyck, G.A., Dominguez, J., Manginell, R., Pluym, T., Bachman, W.B., Lilly, M.P., Bureau-Oxton, C., Pioro-Ladriere, M., & Pioro-Ladriere, M. (2016). A split accumulation gate architecture for silicon MOS quantum dots [Conference Poster]. https://www.osti.gov/biblio/1408958

Carroll, M.S., Rochette, S., Rudolph, M., Roy, A., Curry, M., Ten Eyck, G.A., Dominguez, J., Manginell, R., Pluym, T., Bachman, W.B., Lilly, M.P., Bureau-Oxton, C., Pioro-Ladriere, M., & Pioro-Ladriere, M. (2016). A split accumulation gate architecture for silicon MOS quantum dots [Conference Poster]. https://www.osti.gov/biblio/1408959

Siefert, C., Niederhaus, J.H.J., & Niederhaus, J.H.J. (2016). Modeling permanent magnets in ALEGRA [Conference Poster]. https://www.osti.gov/biblio/1806986

Carleton, J.B., Niederhaus, J.H.J., Hensinger, D.M., & Hensinger, D.M. (2016). Sierra/SM-ALEGRA Solution Import [Conference Poster]. https://www.osti.gov/biblio/1420804

Littlewood, D.J., Silling, S.A., Demmie, P.N., & Demmie, P.N. (2016). Identification of Fragments in a Meshfree Peridynamic Simulation [Conference Poster]. https://doi.org/10.1115/IMECE2016-65400

Turner, D.Z. (2016). What the ill-posed problem in DIC means for practitioners [Conference Poster]. https://www.osti.gov/biblio/1415712

Moreland, K. (2016). What's New in ParaView (SC Booth Presentation) [Presentation]. https://www.osti.gov/biblio/1415713

Rothganger, F. (2016). N2A [Conference Poster]. https://www.osti.gov/biblio/1415725

Bachman, W.B. (2016). Simulating silicon qubits using effective mass theory [Presentation]. https://www.osti.gov/biblio/1415728

Nicholson, B.L., Wan, W., Kameswaran, S., Badgwell, T., Biegler, L., & Biegler, L. (2016). A Parallel Interior Point Solver with Cyclic Reduction for Solving Large-Scale Dynamic Optimization Problems [Conference Poster]. https://www.osti.gov/biblio/1410208

Adams, B.M., Coleman, K., Hooper, R., Khuwaileh, B.A., Lewis, A., Smith, R.C., Swiler, L.P., Turinsky, P.J., Williams, B.W., & Williams, B.W. (2016). User Guidelines and Best Practices for CASL VUQ Analysis Using Dakota. https://doi.org/10.2172/1338015

van der Wijngaart, R., Gamell, M., Teranishi, K., Valenzuela, E., Heroux, M.A., Parashar, M., & Parashar, M. (2016). Fenix A Portable Flexible Fault Tolerance Programming Framework for MPI Applications [Conference Poster]. https://www.osti.gov/biblio/1409884

Staid, A. (2016). Predicting Wind Power Ramp Events [Conference Poster]. https://www.osti.gov/biblio/1409911

Jensen, R.P., Mitchell, S.A., Heath, J.E., Skryzalin, J., & Skryzalin, J. (2016). ?Fingerprinting? Microstructures of Rock [Presentation]. https://www.osti.gov/biblio/1409915

Watson, J., Arguello, B., Pierre, B.J., Staid, A., Laird, C., & Laird, C. (2016). A Stochastic Optimization Approach for Improving Power Systems Resilience through Operations and Planning [Conference Poster]. https://www.osti.gov/biblio/1410148

Olivier, S.L. (2016). OpenMP Tasks: New Features for TR4 [Conference Poster]. https://www.osti.gov/biblio/1410149

Trott, C.R. (2016). Early Experience with P100 on Power8 [Conference Poster]. https://www.osti.gov/biblio/1410151

Robinson, A.C. (2016). Multiphysics Shock Modeling with ALEGRA and Student Contributions [Presentation]. https://www.osti.gov/biblio/1410159

Sunderland, D. (2016). An Overview of the Performance Portability in the Uintah Runtime System Through the Use of Kokkos [Conference Poster]. https://doi.org/10.1109/ESPM2.2016.012

Kouri, D.P. (2016). Optimal Approximation of Spectral Risk Measures with Application to PDE-Constrained Optimization [Conference Poster]. https://www.osti.gov/biblio/1410220

Gallis, M.A., Koehler, T.P., Torczynski, J.R., Plimpton, S.J., & Plimpton, S.J. (2016). Three-Dimensional DSMC Simulations of the Rayleigh-Taylor Instability in Gases [Conference Poster]. https://www.osti.gov/biblio/1410234

Severa, W., Carlson, K.D., Parekh, O., Vineyard, C.M., Aimone, J.B., & Aimone, J.B. (2016). Can we be formal in assessing the strengths and weaknesses of neural architectures? A case study using a spiking cross-correlation algorithm [Conference Poster]. https://www.osti.gov/biblio/1410236

Nicholson, B.L., Siirola, J.D., & Siirola, J.D. (2016). A Framework for Modeling and Optimizing Dynamic Systems Under Uncertainty [Conference Poster]. https://doi.org/10.1016/j.compchemeng.2017.11.003

Musson, L.C., Hennigan, G., Gao, X., Mamaluy, D., & Mamaluy, D. (2016). RAMSES / Charon Progress and Code Collaboration Overview [Conference Poster]. https://www.osti.gov/biblio/1410250

Ebeida, M., Mitchell, S.A., Swiler, L.P., Romero, V., Rushdi, A.A., & Rushdi, A.A. (2016). POF-Darts: Geometric adaptive sampling for probability of failure. Reliability Engineering and System Safety, 155(C), pp. 64-77. https://doi.org/10.1016/j.ress.2016.05.001

Levy, S.L.N., Ferreira, K., Bridges, P.G., & Bridges, P.G. (2016). Improving Application Resilience to Memory Errors with Lightweight Compression [Conference Poster]. https://doi.org/10.1109/SC.2016.27

mc Jones, E., Reu, P.L., Carroll, J.D., Karlson, K.N., Kramer, S., Lehoucq, R.B., Turner, D.Z., & Turner, D.Z. (2016). Identifying and Validating Material Models with Non-Unique Parameter Sets [Conference Poster]. https://www.osti.gov/biblio/1410752

Wills, A.E. (2016). Multiscale by Focusing on Bridging between Established Fields and Codes [Conference Poster]. https://www.osti.gov/biblio/1410771

Rudolph, M., Harvey-Collard, P., Jock, R.M., Jacobson, N.T., Wendt, J.R., Pluym, T., Dominguez, J., Ten Eyck, G.A., Manginell, R., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2016). Coupling MOS Quantum Dot and Phosphorous Donor Qubit Systems [Conference Poster]. https://doi.org/10.1109/IEDM.2016.7838537

Deveci, M., Rajamanickam, S., Boman, E.G., & Boman, E.G. (2016). Sparse Matrix-matrix multiplication for modern manycore architecture [Conference Poster]. https://www.osti.gov/biblio/1422095

Boman, E.G., Patel, A., Chow, E., Rajamanickam, S., & Rajamanickam, S. (2016). FastILU: Finegrained ASynchronous iterative ILU [Conference Poster]. https://www.osti.gov/biblio/1422094

Rajamanickam, S., Deveci, M., Trott, C.R., & Trott, C.R. (2016). Performance Portable Sparse Matrix-Matrix Multiplication on Intel Knights Landing and NVIDIA GPUs [Conference Poster]. https://www.osti.gov/biblio/1524944

Verzi, S.J., Vineyard, C.M., Vugrin, E., Sahakian, M., James, C.D., Aimone, J.B., & Aimone, J.B. (2016). Optimization-based computation with spiking neurons [Conference Poster]. https://doi.org/10.1109/IJCNN.2017.7966098

Grant, R. (2016). The Portals Network API [Conference Poster]. https://www.osti.gov/biblio/1409891

Verzi, S.J., Vineyard, C.M., Vugrin, E., Sahakian, M., James, C.D., Aimone, J.B., & Aimone, J.B. (2016). Optimization-based computation with spiking neurons [Conference Poster]. https://doi.org/10.1109/IJCNN.2017.7966098

Curry, M.L. (2016). Sirocco - Motivation and Overview [Conference Poster]. https://www.osti.gov/biblio/1422123

Siirola, J.D., Laird, C., Nicholson, B.L., Watson, J., Hart, W.E., & Hart, W.E. (2016). Recent developments in Pyomo [Conference Poster]. https://www.osti.gov/biblio/1422111

Moreland, K. (2016). Current Practices to Manage Production-Quality Deployment: ParaView and VTK-m [Presentation]. https://www.osti.gov/biblio/1428146

Ling, J., Barone, M., Davis, W.L., Chowdhary, K., Fike, J., & Fike, J. (2016). Development of Machine Learning Models for Turbulent Wall Pressure Fluctuations [Conference Poster]. https://doi.org/10.2514/6.2017-0755

Agarwal, S., Plimpton, S.J., Hughart, D.R., Hsia, A.W., Richter, I., Cox, J.A., James, C.D., Marinella, M., & Marinella, M. (2016). Resistive memory device requirements for a neural algorithm accelerator [Conference Poster]. Proceedings of the International Joint Conference on Neural Networks. https://doi.org/10.1109/IJCNN.2016.7727298

Agarwal, S., Plimpton, S.J., Hughart, D.R., Hsia, A.W., Richter, I., Cox, J.A., James, C.D., Marinella, M., & Marinella, M. (2016). Resistive memory device requirements for a neural algorithm accelerator [Conference Poster]. Proceedings of the International Joint Conference on Neural Networks. https://doi.org/10.1109/IJCNN.2016.7727298

Vineyard, C.M., Verzi, S.J., James, C.D., Aimone, J.B., & Aimone, J.B. (2016). Quantifying neural information content: A case study of the impact of hippocampal adult neurogenesis. Proceedings of the International Joint Conference on Neural Networks. https://doi.org/10.2172/1561002

Moussa, J.E. (2016). Minimax rational approximation of the Fermi-Dirac distribution. Journal of Chemical Physics, 145(16). https://doi.org/10.1063/1.4965886

Moussa, J.E. (2016). Transversal Clifford gates on folded surface codes [Conference Poster]. Physical Review A. https://doi.org/10.1103/PhysRevA.94.042316

Moussa, J.E. (2016). Transversal Clifford gates on folded surface codes. Physical Review A, 94(4). https://doi.org/10.1103/PhysRevA.94.042316

Carnes, B., Kennon, S.R., & Kennon, S.R. (2016). Percept User Manual. https://doi.org/10.2172/1494324

Tuminaro, R.S., Perego, M., Tezaur, I.K., Salinger, A.G., Price, S., & Price, S. (2016). A matrix dependent/algebraic multigrid approach for extruded meshes with applications to ice sheet modeling. SIAM Journal on Scientific Computing, 38(5). https://doi.org/10.1137/15m1040839

Voskuilen, G.R., Rodrigues, A., Hammond, S., & Hammond, S. (2016). Analyzing allocation behavior for multi-level memory [Conference Poster]. ACM International Conference Proceeding Series. https://doi.org/10.1145/2989081.2989116

Dehollain, J.P., Muhonen, J.T., Blume-Kohout, R.J., Rudinger, K.M., Bachman, W.B., Nielsen, E., Laucht, A., Simmons, S., Kalra, R., Morello, A., & Morello, A. (2016). Optimization of a solid-state electron spin qubit using gate set tomography. New Journal of Physics, 18(10). https://doi.org/10.1088/1367-2630/18/10/103018

Decolvenaere, E., Thompson, A.P., Stephens, J.A., & Stephens, J.A. (2016). SNAP Update 2016 [Presentation]. https://www.osti.gov/biblio/1399191

Debenedictis, E., Williams, R.S., & Williams, R.S. (2016). Help Wanted: A Modern-Day Turing. Computer, 49(10), pp. 76-79. https://doi.org/10.1109/MC.2016.299

Kim, K., Rajamanickam, S., Edwards, H.C., Dohrmann, C.R., & Dohrmann, C.R. (2016). Tacho: Two-level Task Parallel Cholesky Factorization [Conference Poster]. https://www.osti.gov/biblio/1526819

Kramer, R.M.J., Miller, S., Niederhaus, J.H.J., Radtke, G.A., Bettencourt, M.T., Cartwright, K.L., Cyr, E.C., Phillips, E., Robinson, A.C., Shadid, J.N., & Shadid, J.N. (2016). A Rigorous Verification Strategy for a Continuum Plasma Code [Conference Poster]. https://www.osti.gov/biblio/1399198

Phillips, C.A. (2016). Challenges in Data Mining and Optimization [Conference Poster]. https://www.osti.gov/biblio/1398846

Marinella, M., Hoekstra, R.J., & Hoekstra, R.J. (2016). Beyond Moore DOE Lab Workshop: Sandia National Laboratories Capabilities and Interests [Presentation]. https://www.osti.gov/biblio/1399319

Laird, C. (2016). Parallel Algorithms and Optimization for Protection of Critical Infrastructure [Presentation]. https://www.osti.gov/biblio/1399326

Wills, A.E., Decolvenaere, E., & Decolvenaere, E. (2016). DFT Applied to Transition Metal Elements and Binaries [Conference Poster]. https://www.osti.gov/biblio/1404768

Bachman, W.B., Alleman, C., Battaile, C., Lim, H., Littlewood, D.J., Mota, A., & Mota, A. (2016). Concurrent multiscale modeling of microstructural effects on localization behavior in finite deformation solid mechanics [Conference Poster]. https://www.osti.gov/biblio/1404783

Shadid, J.N., Phillips, E., Cyr, E.C., Pawlowski, R., Bettencourt, M.T., Cartwright, K.L., Lin, P.T., Kramer, R.M.J., Niederhaus, J.H.J., Radtke, G.A., Robinson, A.C., & Robinson, A.C. (2016). Towards Scalable and Efficient Solution of Full Maxwell Electromagnetics - Multifluid Plasma Systems [Conference Poster]. https://www.osti.gov/biblio/1404787

Bradley, A.M. (2016). A Hybrid Multithreaded Direct Sparse Triangular Solver [Conference Poster]. https://doi.org/10.1137/1.9781611974690.ch2

Turner, D.Z. (2016). A New Paradigm for Model Calibration: Opportunities and Challenges [Presentation]. https://www.osti.gov/biblio/1400029

Edwards, H.C. (2016). Kokkos: Performance Portability and Productivity for C++ Applications [Presentation]. https://www.osti.gov/biblio/1400036

Wills, A.E. (2016). Making Density Functional Theory work for ALL materials [Conference Poster]. https://www.osti.gov/biblio/1400039

Robbins, J. (2016). Using a common geometry description to enable optimization-based design [Conference Poster]. https://www.osti.gov/biblio/1400041

Wildey, T., Shadid, J.N., Cyr, E.C., Chaudry, J., & Chaudry, J. (2016). Adjoint Enhanced Methods for Uncertainty Quantification of Multiphysics Applications [Conference Poster]. https://www.osti.gov/biblio/1400047

Edwards, H.C. (2016). Kokkos Spaces: Expressing Locality in Heterogeneous Node Architectures [Conference Poster]. https://www.osti.gov/biblio/1400052

Rajamanickam, S. (2016). Scalable Incomplete Factorization Utilizing Combinatorial Methods to Reduce Overheads [Conference Poster]. https://www.osti.gov/biblio/1400053

Ebeida, M., Awad, M., Rushdi, A., Abbas, M., Mitchell, S., Mahmoud, A., Bajaj, C., & Bajaj, C. (2016). All-Hex Meshing of Multiple-Region Domains without Cleanup [Conference Poster]. https://www.osti.gov/biblio/1400055

Koester, J.J., Bishop, J.E., Ebeida, M., Mitchell, S.A., & Mitchell, S.A. (2016). Triangulation / Voronoi Cell Based RKPM [Conference Poster]. https://www.osti.gov/biblio/1400061

Silling, S.A. (2016). Meshfree peridynamics for soft materials [Conference Poster]. https://www.osti.gov/biblio/1400066

Peterson, K., Bochev, P., Kuberry, P., & Kuberry, P. (2016). Mortar Flux Recovery (MFR) Algorithm and Analysis [Conference Poster]. https://www.osti.gov/biblio/1400364

Abbott, L.J., Moore, S.G., & Moore, S.G. (2016). Multiscale Molecular Simulations of PV Encapsulants [Presentation]. https://www.osti.gov/biblio/1400365

Frank, M.P., Debenedictis, E., & Debenedictis, E. (2016). Chaotic Logic: Presenting the Paper "A Novel Operational Paradigm for Thermodynamically Reversible Logic" [Conference Poster]. https://www.osti.gov/biblio/1401927

Frischknecht, A.L., Cheung, J., Hong, B., Perego, M., Bochev, P., & Bochev, P. (2016). Electrokinetic Models beyond Mean-Field Theory [Presentation]. https://www.osti.gov/biblio/1401931

Vineyard, C.M. (2016). A Neurally Inspired Spiking Temporal Processing Unit Architecture [Presentation]. https://www.osti.gov/biblio/1401932

Vineyard, C.M. (2016). Overcoming the Static Learning Bottleneck ? The Need for Adaptive Neural Learning [Conference Poster]. https://doi.org/10.1109/ICRC.2016.7738692

Davis, W.L., Dunlavy, D.M., Vorobeychik, Y., Butler, K., Forsythe, C., Letter, M., Murchison, N., Nauer, K., & Nauer, K. (2016). Using Machine Learning in Adversarial Environments. https://doi.org/10.2172/1563076

Crossno, P.J., Bergeret, N., Brugger, E., Colin de Verdiere, G., Guilbaud, C., Patchett, J., & Patchett, J. (2016). NNSA/CEA Cooperation in Computer Science: Visualization Update November Update [Presentation]. https://www.osti.gov/biblio/1401935

Trask, N.A. (2016). Meshless methods and continuum simulation [Presentation]. https://www.osti.gov/biblio/1401943

Devine, K. (2016). The Zoltan2 Toolkit: Partitioning Task Placement Coloring and Ordering [Conference Poster]. https://www.osti.gov/biblio/1420147

Grant, R., Levenhagen, M., Olivier, S.L., Debonis, D., Bachman, W.B., Bachman, W.B., & Bachman, W.B. (2016). Standardizing Power Monitoring and Control at Exascale. Computer, 49(10), pp. 38-46. https://doi.org/10.1109/mc.2016.308

Pawlowski, R. (2016). Agile Components Update [Presentation]. https://www.osti.gov/biblio/1408345

Klinvex, A.M., Wolf, M., Dunlavy, D.M., & Dunlavy, D.M. (2016). TriData: Applying Trilinos to Data Analysis [Presentation]. https://www.osti.gov/biblio/1408343

Laird, C., Klise, K.A., Liu, J., & Liu, J. (2016). A Global Stochastic Programming Approach for the Optimal Placement of Gas Detectors with Nonuniform Unavailabilities [Conference Poster]. https://www.osti.gov/biblio/1420244

Kim, K., Perego, M., Ellingwood, N.D., & Ellingwood, N.D. (2016). Intrepid2: Towards Performance Portability [Conference Poster]. https://www.osti.gov/biblio/1526836

Wiesner, T.A. (2016). Docker for Trilinos [Conference Poster]. https://www.osti.gov/biblio/1406872

Ober, C.C., Pawlowski, R., Cyr, E.C., & Cyr, E.C. (2016). Tempus Time-Integration Package [Presentation]. https://www.osti.gov/biblio/1406860

Silling, S.A. (2016). Peridynamic energy balance with application to soft materials [Presentation]. https://www.osti.gov/biblio/1505442