Publications

Landahl, A.J. (2012). Homological Stabilizer Codes [Conference]. https://www.osti.gov/biblio/1145269

Lin, P.T., Shadid, J.N., & Shadid, J.N. (2012). Towards Massively Parallel Unstructured Mesh Drift-Diffusion Semiconductor Simulations [Conference]. https://www.osti.gov/biblio/1145362

Ray, J., Lefantzi, S., McKenna, S.A., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2012). BAYESIAN ESTIMATION OF MULTISCALE STRUCTURES IN A BINARY MEDIUM FROM SPARSE OBSERVATIONS [Conference]. https://www.osti.gov/biblio/1145349

Tucker, J.R., Magyar, R.J., & Magyar, R.J. (2012). The potential, limitations, and challenges of divide and conquer quantum electronic structure calculations on energetic materials. https://doi.org/10.2172/1038199

Ferreira, K.B., Brightwell, R.B., & Brightwell, R.B. (2012). FlipSphere: A Software-based DRAM Error Detection and Correction Library for HPC [Conference]. https://www.osti.gov/biblio/1145355

Wills, A.E. (2012). Requirements for Predictive Density Functional Theory Methods for Heavy Materials Equation of State [Conference]. https://www.osti.gov/biblio/1111409

Schultz, P.A. (2012). Retrofit of the HSE density functional [Conference]. https://www.osti.gov/biblio/1078708

Rajamanickam, S., Boman, E.G., & Boman, E.G. (2012). An Evaluation of the Zoltan Parallel Graph and Hypergraph Partitioners [Conference]. https://www.osti.gov/biblio/1078704

Littlewood, D.J., Mish, K.D., & Mish, K.D. (2012). Peridynamic Simulation of Damage Evolution for Structural Health Monitoring [Conference]. https://www.osti.gov/biblio/1145324

Littlewood, D.J., Tikare, V., & Tikare, V. (2012). Peridynamic Modeling of Void Collapse in Representative Plutonium Oxide Microstructures [Conference]. https://www.osti.gov/biblio/1145237

Landahl, A.J. (2012). Quantum Speedup by Quantum Apealing [Conference]. https://www.osti.gov/biblio/1118225

Pedretti, K. (2012). VM-based Emulation of Future Generation HPC Systems. International Journal of High Performance Computing, 26(2). https://doi.org/10.1177/1094342012436619

Schultz, P.A. (2012). Simple intrinsic defects in GaP and InP [Conference]. https://www.osti.gov/biblio/1145270

Hammond, S. (2012). LDPLFS: Improving I/O Performance Without Application Modification [Conference]. https://www.osti.gov/biblio/1078730

Rahman, R., Nielsen, E., Muller, R.P., Carroll, M.S., & Carroll, M.S. (2012). Effect of fixed charge gate oxide defects on the exchange energy of a multi-valley silicon double quantum dot [Conference]. https://www.osti.gov/biblio/1068439

Nielsen, E., Young, R.W., Muller, R.P., Salinger, A.G., Carroll, M.S., & Carroll, M.S. (2012). Optimization of Realistic Silicon Double Quantum Dots through Simulation [Presentation]. https://www.osti.gov/biblio/1688608

Hart, W.E., Siirola, J.D., & Siirola, J.D. (2012). Getting Started with Coopr 3.1 [Presentation]. https://www.osti.gov/biblio/1657411

Willenbring, J.M., Heroux, M.A., Devine, K., Boman, E.G., & Boman, E.G. (2012). The Trilinos Project - Enabling predictive science and engineering through software libraries for scalable computing [Presentation]. https://www.osti.gov/biblio/1657412

Wixom, R.R., Rodriguez, M.A., Schultz, P.A., Cowgill, D.F., & Cowgill, D.F. (2012). Effects of 3He in ErT2 [Conference]. https://www.osti.gov/biblio/1078698

Ang, J.A., Brightwell, R.B., Dosanjh, S., Hemmert, K.S., Rodrigues, A., & Rodrigues, A. (2012). Exascale Computing and the Role of Co-Design. Proposed for publication in Advances in Parallel Computing.. https://www.osti.gov/biblio/1068484

Watson, J., Hart, W.E., Woodruff, D.L., Murray, R., & Murray, R. (2012). Formulating and analyzing multi-stage sensor placement problems [Conference]. Water Distribution Systems Analysis 2010 - Proceedings of the 12th International Conference, WDSA 2010. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84856147575&origin=inward

Wong, A., Young, J., Laird, C.D., Hart, W.E., McKenna, S.A., & McKenna, S.A. (2012). Optimal determination of grab sample locations and source inversion in large-scale water distribution systems [Conference]. Water Distribution Systems Analysis 2010 - Proceedings of the 12th International Conference, WDSA 2010. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84856142786&origin=inward

Knupp, P. (2012). Introducing the target-matrix paradigm for mesh optimization via node-movement [Conference]. Engineering with Computers. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84905506076&origin=inward

Fiala, D., Ferreira, K.B., Mueller, F., Engelmann, C., & Engelmann, C. (2012). A tunable, software-based DRAM error detection and correction library for HPC [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84882605687&origin=inward

Cyr, E.C., Shadid, J.N., Tuminaro, R.S., & Tuminaro, R.S. (2012). Stabilization and scalable block preconditioning for the Navier-Stokes equations. Journal of Computational Physics, 231(2), pp. 345-363. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=81455131488&origin=inward

Wills, A.E. (2012). New density functional theory approaches for enabling prediction of chemical and physical properties of plutonium and other actinides. https://doi.org/10.2172/1034888

Bond, S.D. (2012). On the estimation and correction of discretization error in molecular dynamics averages. Proposed for publication in Applied Numerical Mathematics.. https://www.osti.gov/biblio/1062764

Stewart, J. (2012). VUQ Focus Area [Conference]. https://www.osti.gov/biblio/1113291

Aimone, J.B. (2012). Pattern separation or Pattern Resolution - A critical look at DG and neurogenesis function [Conference]. https://www.osti.gov/biblio/1140366

van Bloemen Waanders, B.G. (2012). Low dimensional models for estimation of anthropogenic CO2 emissions from atmospheric observations [Presentation]. https://www.osti.gov/biblio/1660820

Oldfield, R. (2012). Supporting Integrated Data Services: A New Challenge for HPC Computing [Presentation]. https://www.osti.gov/biblio/1648458

Mattsson, T., Thompson, A.P., & Thompson, A.P. (2012). The Electron Dynamics of Shocked Polyethylene Crystal. Proposed for publication in Physical Review B.. https://www.osti.gov/biblio/1062940

Siirola, J.D., Watson, J., & Watson, J. (2012). Modeling and Optimization of Superstructure-based Stochastic Programs for Risk-aware Decision Support [Conference]. Computer Aided Chemical Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84864497341&origin=inward

Edwards, H.C., Sunderland, D., & Sunderland, D. (2012). A Library for Performance-Portable Multidimensional Array Computations on Manycore Nodes [Conference]. https://www.osti.gov/biblio/1062961

Nielsen, E., Salinger, A.G., Muller, R.P., Young, R.W., & Young, R.W. (2012). The QCAD Framework for Quantum Device Simulation [Presentation]. https://www.osti.gov/biblio/1688601

Crossno, P.J. (2012). Comparison of Open Source Visual Analytics Toolkits [Conference]. https://www.osti.gov/biblio/1078803

Moreland, K. (2012). A Survey of Visualization Pipelines. Proposed for publication in IEEE Transactions on Visualization and Computer Graphics.. https://www.osti.gov/biblio/1062850

Moreland, K. (2012). Dax Design/DeviceAdapter [Presentation]. https://www.osti.gov/biblio/1688603

Landahl, A.J. (2012). NASA QFT Conference: Adiabatic Quantum Computing at Sandia [Conference]. https://www.osti.gov/biblio/1118339

Turner, D.Z. (2012). Modeling reactive transport in deformable porous media using the theory of interacting continua. https://doi.org/10.2172/1038224

Mattsson, T., Root, S., Shulenburger, L., Cochrane, K.R., Wills, A.E., Wixom, R.R., Flicker, D., & Flicker, D. (2012). Modeling experiments on Z where chemistry matters: polymers CO2 and explosives [Conference]. https://www.osti.gov/biblio/1118347

Gray, G.A., Hart, W.E., Hough, P.D., Parekh, O., Phillips, C.A., Siirola, J.D., Swiler, L.P., Watson, J., & Watson, J. (2012). Optimization of large-scale heterogeneous system-of-systems models. https://doi.org/10.2172/1034869

Willenbring, J.M., Heroux, M.A., & Heroux, M.A. (2012). TriBITS lifecycle model. Version 1.0, a lean/agile software lifecycle model for research-based computational science and engineering and applied mathematical software. https://doi.org/10.2172/1038225

Hackebeil, G.A., Mann, A.V., Hart, W.E., Klise, K.A., Laird, C.D., & Laird, C.D. (2012). A Stochastic Programming Formulation for Disinfectant Booster Station Placement to Protect Large-Scale Water Distribution Systems [Conference]. Computer Aided Chemical Engineering. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84864519224&origin=inward

Peterson, K. (2012). A parameter-free stabilized finite element method for scalar advection-diffusion problems. Central European Journal of Mathematics. https://www.osti.gov/biblio/1078823

Shadid, J.N. (2012). Fast Plasmoid Instabilities in the Island Coalescence Problem [Conference]. https://www.osti.gov/biblio/1069021

Scovazzi, G., Collis, S.S., Gerstenberger, A., & Gerstenberger, A. (2012). Computing gravity-driven viscous fingering flows in complex subsurface geometries: A high-order discontinuous Galerkin approach [Conference]. https://www.osti.gov/biblio/1118333

Shadid, J.N. (2012). Scalable Implicit Solution Methods for Multiple-time-scale Multiphysics Systems: Applications from CFD Transport/Reaction and MHD [Conference]. https://www.osti.gov/biblio/1118324

Shadid, J.N. (2012). Scalable Fully-implicit Fully-coupled Solution Methods for Multiple-time-scale Multiphysics Systems [Conference]. https://www.osti.gov/biblio/1118340

Moreland, K. (2012). Dax Design/Error Management [Presentation]. https://www.osti.gov/biblio/1688604

Moreland, K., Fabian, N., & Fabian, N. (2012). Next-Generation Capabilities for Large-Scale Scientific Visualization [Presentation]. https://www.osti.gov/biblio/1648486

Spotz, W.F. (2012). PyTrilinos: Recent Advances in the Python Interface to Trilinos. Scientific Programming, 20(3), pp. 311-325. https://doi.org/10.1155/2012/965812

Pawlowski, R., Phipps, E.T., Salinger, A.G., & Salinger, A.G. (2012). Automating embedded analysis capabilities and managing software complexity in multiphysics simulation, Part I: Template-based generic programming. Scientific Programming, 20(2), pp. 197-219. https://doi.org/10.1155/2012/202071

Littlewood, D.J., Mish, K.D., Pierson, K.H., & Pierson, K.H. (2012). Peridynamic simulation of damage evolution for structural health monitoring [Conference]. ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE). https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84887275056&origin=inward

Moreland, K., Ayachit, U., Geveci, B., Ma, K.-L., & Ma, K.-L. (2011). Dax toolkit: A proposed framework for data analysis and visualization at extreme scale [Conference]. 1st IEEE Symposium on Large-Scale Data Analysis and Visualization 2011, LDAV 2011 - Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84055189992&origin=inward

Schultz, P.A. (2011). First principles predictions of intrinsic defects in aluminum arsenide, AlAs [Conference]. Materials Research Society Symposium Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=83755183854&origin=inward

Urbina, A., Swiler, L.P., & Swiler, L.P. (2011). Decision making under epistemic uncertainty for a complex mechanical system [Conference]. Collection of Technical Papers - AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84872470429&origin=inward

Romero, V., Swiler, L.P., Urbina, A., & Urbina, A. (2011). An initial comparison of methods for representing and aggregating experimental uncertainties involving sparse data [Conference]. Collection of Technical Papers - AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics and Materials Conference. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84872436691&origin=inward

Rajamanickam, S., Boman, E.G., Heroux, M.A., & Heroux, M.A. (2011). A hybrid-hybrid solver for manycore platforms [Conference]. SC'11 - Proceedings of the 2011 High Performance Computing Networking, Storage and Analysis Companion, Co-located with SC'11. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84859044055&origin=inward

Mitchell, S.A., Day, D.M., & Day, D.M. (2011). Flexible approximate counting [Conference]. ACM International Conference Proceeding Series. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84855319031&origin=inward

Bova, S.W., Kirk, B.S., & Kirk, B.S. (2011). On the preservation of total enthalpy in SUPG methods [Conference]. 20th AIAA Computational Fluid Dynamics Conference 2011. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84880614011&origin=inward

Pawlowski, R.P., Shadid, J.N., Smith, T.M., Cyr, E.C., & Cyr, E.C. (2011). Scalable stabilized fe formulations for simulating turbulent reacting flows in light water reactors [Conference]. 11AIChE - 2011 AIChE Annual Meeting, Conference Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84857223524&origin=inward

Stracuzzi, D.J. (2011). A plausibility-based approach to incremental inference [Conference]. AAAI Fall Symposium - Technical Report. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84856408617&origin=inward

Lofstead, J., Oldfield, R., Kordenbrock, T., Reiss, C., & Reiss, C. (2011). Extending scalability of collective IO through nessie and staging [Conference]. PDSW'11 - Proceedings of the 6th Parallel Data Storage Workshop, Co-located with SC'11. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84859809132&origin=inward

Peterson, K. (2011). The Anisotropic Elastic-Decohesive Constitutive Model in CICE [Conference]. https://www.osti.gov/biblio/1143878

Hsieh, M.N., Rodrigues, A., & Rodrigues, A. (2011). A framework for architecture-level power area and thermal simulation and its application to network-on-chip design exploration. SIGMETRICS Performance Evaluation Review. https://www.osti.gov/biblio/1143900

Hsieh, M.N., Rodrigues, A., & Rodrigues, A. (2011). System Implications of Memory Reliability in Exascale Computing [Conference]. https://www.osti.gov/biblio/1143850

Adams, B.M., Bohnhoff, W.J., Dalbey, K., Eddy, J.P., Eldred, M., Hough, P.D., Lefantzi, S., Swiler, L.P., Vigil, D., & Vigil, D. (2011). DAKOTA : a multilevel parallel object-oriented framework for design optimization, parameter estimation, uncertainty quantification, and sensitivity analysis. https://doi.org/10.2172/1031910

Landahl, A.J. (2011). Fault-tolerant quantum computing QEC 2011 tutorial [Conference]. https://www.osti.gov/biblio/1143838

Doerfler, D.W., Hemmert, K.S., & Hemmert, K.S. (2011). Trinity Architecture & Design [Presentation]. https://www.osti.gov/biblio/1661440

Safta, C., Sargsyan, K., Bambha, R., Michelsen, H.A., Debusschere, B.J., Najm, H.N., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2011). Efficient Source Inversion Methodologies using Regional Transport Models [Conference]. https://www.osti.gov/biblio/1106861

Hendry, G., Hammond, S., & Hammond, S. (2011). Coarse-Grain Simulation of Networks-on-Chip using SST/Macro [Conference]. https://www.osti.gov/biblio/1143907

Phipps, E.T., Red-Horse, J.R., & Red-Horse, J.R. (2011). Uncertainty segregation and tensor-product-type approximation in reduced-dimensional stochastic analysis of coupled systems. International Journal for Numerical Methods in Engineering. https://www.osti.gov/biblio/1143849

Moreland, K. (2011). Dax Design/Basic Vector Classes [Presentation]. https://www.osti.gov/biblio/1690348

Root, S., Haill, T.A., Lane, J.M.D., Thompson, A.P., Grest, G.S., Mattsson, T., & Mattsson, T. (2011). Shock compression of hydrocarbon foam to 200 GPa: experiments mesoscale modeling and atomistic simulations. Physical Review B. https://www.osti.gov/biblio/1113327

Rider, W., Love, E., Scovazzi, G., & Scovazzi, G. (2011). A high resolution Lagrangian method using nonlinear hybridization and hyperviscosity. Proposed for publication in Computers & Fluids.. https://www.osti.gov/biblio/1055888

Landahl, A.J. (2011). QIP 2012: Fault-tolerant quantum computing with color codes [Conference]. https://www.osti.gov/biblio/1118362

Schultz, P.A. (2011). Nuclear Energy Advanced Modeling and Simulation Waste Integrated Performance and Safety Codes (NEAMS Waste IPSC). https://doi.org/10.2172/1034882

Moreland, K. (2011). Large-Scale Interactive Visualization with ParaView. International Journal of Computational Science and Engineering (IJCSE). https://www.osti.gov/biblio/1113292

Pawlowski, R., Shadid, J.N., Wildey, T., & Wildey, T. (2011). Embedded UQ and QoI/Adjoints in Drekar: New Directions [Conference]. https://www.osti.gov/biblio/1113265

Moreland, K. (2011). Dax Design/Basic Control Environment API [Presentation]. https://www.osti.gov/biblio/1688691

Ridzal, D., Valentin, M.A., & Valentin, M.A. (2011). Numerical study of a matrix-free trust-region SQP method for equality constrained optimization. https://doi.org/10.2172/1038211

Pawlowski, R., Summers, R.M., & Summers, R.M. (2011). How will VERA-CFD couple into VERA? [Conference]. https://www.osti.gov/biblio/1113270

Pawlowski, R., Belcourt, K., Hooper, R., Schmidt, R., & Schmidt, R. (2011). VERA MultiphysicsCoupling with LIME: Code Requirements [Conference]. https://www.osti.gov/biblio/1118361

Solberg, O.D., Misra, M., Schoeniger, J.S., & Schoeniger, J.S. (2011). Pathogen detection in clinical samples by high-throughput sequencing [Conference]. https://www.osti.gov/biblio/1289678

Parks, M.L., Heroux, M.A., Day, D.M., Frischknecht, A.L., & Frischknecht, A.L. (2011). Precision Neutral Computation Enables Efficient Robust Algorithms [Presentation]. https://www.osti.gov/biblio/1661574

Gao, X., Nielsen, E., Young, R.W., Salinger, A.G., Muller, R.P., & Muller, R.P. (2011). Semiclassical Poisson and Self-Consistent Poisson-Schrodinger Solvers in QCAD [Conference]. https://www.osti.gov/biblio/1113318

Muller, R.P., Bishop, N.C., Lu, T., Pluym, T., Bielejec, E.S., Lilly, M.P., Landahl, A.J., Carroll, M.S., Young, R.W., Nielsen, E., Rahman, R., Witzel, W., Gao, X., Tracy, L.A., Bussmann, E., & Bussmann, E. (2011). Development of few-electron Si quantum dots for use as qubits [Conference]. https://www.osti.gov/biblio/1113275

Witzel, W. (2011). Quantum control of hybrid nuclear-electronic qubits. Nature. https://www.osti.gov/biblio/1113298

Niederhaus, J.H.J., Voth, T.E., Mosso, S.J., & Mosso, S.J. (2011). Code verification for the extended finite element method: the compound cohesionless impact problem [Conference]. https://www.osti.gov/biblio/1288506

Hendrickson, B.A., Berry, J., & Berry, J. (2011). CHALLENGES IN PARALLEL GRAPH PROCESSING. Parallel Processing Letters, 17(01), pp. 5-20. https://doi.org/10.1142/s0129626407002843

Underwood, K.D., Coffman, J., Larsen, R., Hemmert, K.S., Barrett, B.W., Brightwell, R.B., Levenhagen, M., & Levenhagen, M. (2011). Enabling flexible collective communication offload with triggered operations [Conference]. Proceedings - Symposium on the High Performance Interconnects, Hot Interconnects. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=80555144336&origin=inward

Salinger, A.G. (2011). Embedded Nonlinear Analysis Tools Capability Area Overview [Conference]. https://www.osti.gov/biblio/1111696

Pawlowski, R., Cyr, E.C., Shadid, J.N., Smith, T.M., & Smith, T.M. (2011). Building an Open-source Multiphysics PDE Research Tool using Trilinos [Conference]. https://www.osti.gov/biblio/1118462

Devine, K. (2011). Meshes Load Balancing and Geometry Capability Area [Conference]. https://www.osti.gov/biblio/1111690

Devine, K. (2011). Architecture-aware Load Balancing and Ordering [Conference]. https://www.osti.gov/biblio/1118408

Oldfield, R. (2011). Data Services and Trilinos: A Brief Introduction to Trios Data Services [Presentation]. https://www.osti.gov/biblio/1661492

Schultz, P.A. (2011). Predicting radiation defect chemistry in III-V [Presentation]. https://www.osti.gov/biblio/1661498

Phipps, E.T., Pawlowski, R., Salinger, A.G., & Salinger, A.G. (2011). Embedded Algorithms through Template-based Generic Programming [Conference]. https://www.osti.gov/biblio/1111712

Willenbring, J.M. (2011). Trilinos Framework Update [Presentation]. https://www.osti.gov/biblio/1661499