Publications

Ober, C.C. (2014). Development High-Performance Computing Capabilities for Non-Invasive Testing of Nuclear Weapons Systems - CCC6 [Presentation]. https://www.osti.gov/biblio/1682592

Spotz, W.F. (2014). Aeras: A Next Generation Atmosphere Model [Conference]. https://doi.org/10.1016/j.procs.2015.05.478

Sargsyan, K., Najm, H.N., Chowdhary, K., Debusschere, B.J., Swiler, L.P., Eldred, M., & Eldred, M. (2014). Uncertainty quantification methods for model calibration validation, and risk analysis [Conference]. 16th AIAA Non-Deterministic Approaches Conference. https://doi.org/10.2514/6.2014-1497

Foulk, J.W., Mota, A., Veilleux, M.G., Emery, J., Hansen, G., Salinger, A.G., & Salinger, A.G. (2014). Progress in Adaptive Computational Mechanics Applications Using the Albany AgileComponents Framework [Conference]. https://www.osti.gov/biblio/1140297

Lin, P.T. (2014). Sequoia CCC6: Enabling high fidelity simulations for ASC codes with the next-generation Trilinos solver stack Cielo CCC6: Improving the next generation solver stack for ASC codes with focus on abnormal thermal environment simulation [Presentation]. https://www.osti.gov/biblio/1684730

Jayaraj, J. (2014). Evaluating transformations for data locality and short SIMD vectorization in Computational Fluid Dynamics [Conference]. https://www.osti.gov/biblio/1140765

Moreland, K. (2014). 15 Years of Large-Scale Scientific Visualization (University of Oregon Colloquium Talk) [Presentation]. https://www.osti.gov/biblio/1684736

Bond, S.D. (2014). Multilevel summation methods for efficient evaluation of long-range pairwise interactions in atomistic and coarse-grained molecular simulation. https://doi.org/10.2172/1147669

Shadid, J.N., Pawlowski, R., Cyr, E.C., Wildey, T., & Wildey, T. (2014). Thermal hydraulic simulations, error estimation and parameter sensitivity studies in Drekar::CFD. https://doi.org/10.2172/1204072

Dosanjh, M.G.F., Kelly, S.M., Laros, J.H., Vaughan, C.T., & Vaughan, C.T. (2014). An Evaluation of BitTorrent's Performance In HPC Environments [Conference]. https://doi.org/10.1145/2612262.2612269

Ferreira, K.B., Stearley, J., & Stearley, J. (2014). Extra Bits on SRAM and DRAM Errors - More Data from the Field [Conference]. https://www.osti.gov/biblio/1140778

Ferreira, K.B., Widener, P., Levy, S.L.N., & Levy, S.L.N. (2014). Understanding the Effects of Communication on Uncoordinated Checkpointing at Scale [Conference]. https://www.osti.gov/biblio/1140761

Willenbring, J.M. (2014). Trilinos Framework Update [Presentation]. https://www.osti.gov/biblio/1682608

Moussa, J.E., Baczewski, A.D., & Baczewski, A.D. (2014). Comment on %22Self-Averaging Stochastic Kohn-Sham Density-Functional Theory%22. Physical Review Letters. https://www.osti.gov/biblio/1140704

Moreland, K. (2014). SDAV Highlight: Massively Threaded Visualization Algorithms for theNext Generation of High Performance Computing [Presentation]. https://www.osti.gov/biblio/1682610

Ferreira, K.B. (2014). FlipSphere: A Software-based DRAM Error Detection and Correction Library for HPC [Conference]. https://www.osti.gov/biblio/1140359

Davis, W.L., Dunlavy, D.M., & Dunlavy, D.M. (2014). Hybrid methods for cybersecurity analysis :. https://doi.org/10.2172/1147641

Bond, S.D., Lehoucq, R.B., & Lehoucq, R.B. (2014). Analysis and approximation of a finite-range jump process via radial basis function methods [Conference]. https://www.osti.gov/biblio/1140712

Hendrickson, B.A. (2014). The Need for Advanced Computing [Conference]. https://www.osti.gov/biblio/1140313

Robinson, A.C. (2014). Investigation of ALEGRA shock hydrocode algorithms using an exact free surface jet flow solution. https://doi.org/10.2172/1147601

Jayaraj, J. (2014). CFD Builder: A Library Builder for Computational Fluid Dynamics [Conference]. https://doi.org/10.1109/IPDPSW.2014.117

Doerfler, D.W. (2014). Division 1000 News Notes Submission Form [Presentation]. https://www.osti.gov/biblio/1694409

Romero, L., Torczynski, J.R., & Torczynski, J.R. (2014). On the Stability of Stochastic Parametrically Forced Equations with Rank One Forcing. SIAM Journal of Control and Optimization. https://www.osti.gov/biblio/1140325

Curry, M.L., Ward, H.L., Martinez, D., & Martinez, D. (2014). I/O Systems and Power in the Exascale Era [Presentation]. https://www.osti.gov/biblio/1684748

Wilson, A.T. (2014). US Civilian Air Traffic April 4 2013 [Presentation]. https://www.osti.gov/biblio/1684752

Keiter, E., Warrender, C., Mei, T., Russo, T.V., Schiek, R.L., Thornquist, H., Verley, J.C., Coffey, T.S., Pawlowski, R., & Pawlowski, R. (2014). Xyce parallel electronic simulator users' guide, Version 6.0.1. https://doi.org/10.2172/1147554

Keiter, E., Mei, T., Russo, T.V., Pawlowski, R., Schiek, R.L., Coffey, T.S., Thornquist, H., Verley, J.C., Warrender, C., & Warrender, C. (2014). Xyce parallel electronic simulator reference guide, Version 6.0.1. https://doi.org/10.2172/1147677

Blume-Kohout, R.J., Gamble, J.K., Nielsen, E., Sterk, J.D., Mizrahi, J.A., Maunz, P.L.W., & Maunz, P.L.W. (2014). Quantum Graph Analysis and Gate Set Tomography [Conference]. https://www.osti.gov/biblio/1140335

Hammond, S. (2014). Application Memory Analysis [Presentation]. https://www.osti.gov/biblio/1684764

Salinger, A.G., Perego, M., Tuminaro, R.S., & Tuminaro, R.S. (2014). The Albany/FELIX First Order Stokes Dycore [Conference]. https://www.osti.gov/biblio/1140556

Carr, R.D. (2014). Ramsey Theory and Integrality Gap for the Independent Set Problem. Operations Research Letters, 42(2). https://doi.org/10.1016/j.orl.2014.01.007

Levy, S.L.N., Ferreira, K.B., Widener, P., & Widener, P. (2014). Using simulation to evaluate the performance of resilience strategies and process failures. https://doi.org/10.2172/1204092

Lofstead, G.F. (2014). Efficient Transactions and Failure Detection for Parallel and Distributed Computing [Conference]. https://www.osti.gov/biblio/1140344

Debenedictis, E., Aidun, J.B., & Aidun, J.B. (2014). Sandia Helps Reboot Computing [Presentation]. https://www.osti.gov/biblio/1684784

Berry, J., Phillips, C.A., Plimpton, S.J., Shead, T.M., & Shead, T.M. (2014). Maintaining Connected Components for Infinite Graph Streams [Presentation]. https://doi.org/10.1145/2501221.2501234

Sunderland, D. (2014). Portable Manycore Sparse Linear System Assembly Algorithms and Performance Tradeoffs [Conference]. https://www.osti.gov/biblio/1140450

Heroux, M.A. (2014). System Software: A Necessary but Ill-prepared Hero [Conference]. https://www.osti.gov/biblio/1140697

Trott, C.R., Hammond, S., Thompson, A.P., & Thompson, A.P. (2014). SNAP: Strong scaling high fidelity molecular dynamics simulations on leadership-class computing platforms [Conference]. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). https://doi.org/10.1007/978-3-319-07518-1_2

Reed, T., Abbott, R.G., Anderson, B., Nauer, K., & Nauer, K. (2014). Simulation of workflow and threat characteristics for cyber security incident response teams [Conference]. Proceedings of the Human Factors and Ergonomics Society. https://doi.org/10.1177/1541931214581089

Stark, D., Barrett, R.F., Grant, R., Olivier, S.L., Bachman, W.B., Vaughan, C.T., & Vaughan, C.T. (2014). Early Experiences Co-Scheduling Work and Communication Tasks for Hybrid MPI+X Applications [Conference Poster]. Proceedings of ExaMPI 2014: Exascale MPI 2014 - held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis. https://doi.org/10.1109/ExaMPI.2014.6

Cyr, E.C., Chaudhry, J.H., Liu, K., Manteuffel, T.A., Olson, L.N., Tang, L., & Tang, L. (2014). Enhancing least-squares finite element methods through a quantity-of-interest. SIAM Journal on Numerical Analysis, 52(6), pp. 3085-3105. https://doi.org/10.1137/13090496X

Marinella, M., Mickel, P.R., Lohn, A.J., Hughart, D.R., Bondi, R.J., Mamaluy, D., Hjalmarson, H.P., Stevens, J.E., Decker, S., Apodaca, R., Evans, B.R., Aimone, J.B., Rothganger, F., James, C.D., Debenedictis, E., & Debenedictis, E. (2014). Development, characterization, and modeling of a TaOx ReRAM for a neuromorphic accelerator [Conference Poster]. ECS Transactions. https://doi.org/10.1149/06414.0037ecst

Marinella, M., Mickel, P.R., Lohn, A.J., Hughart, D.R., Bondi, R.J., Mamaluy, D., Hjalmarson, H.P., Stevens, J.E., Decker, S., Apodaca, R., Evans, B.R., Aimone, J.B., Rothganger, F., James, C.D., Debenedictis, E., & Debenedictis, E. (2014). Development, characterization, and modeling of a TaOx ReRAM for a neuromorphic accelerator [Conference Poster]. ECS Transactions. https://doi.org/10.2172/1241888

Slota, G.M., Madduri, K., Rajamanickam, S., & Rajamanickam, S. (2014). PuLP: Scalable multi-objective multi-constraint partitioning for small-world networks [Conference Poster]. Proceedings - 2014 IEEE International Conference on Big Data, IEEE Big Data 2014. https://doi.org/10.1109/BigData.2014.7004265

Deveci, M., Rajamanickam, S., Leung, V.J., Pedretti, K., Olivier, S.L., Bunde, D.P., Catalyurek, U.V., Devine, K., & Devine, K. (2014). Exploiting geometric partitioning in task mapping for parallel computers [Conference]. Proceedings of the International Parallel and Distributed Processing Symposium, IPDPS. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84906673534&origin=inward

Dalbey, K., Swiler, L.P., & Swiler, L.P. (2014). Gaussian process adaptive importance sampling [Conference]. International Journal for Uncertainty Quantification. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84926154240&origin=inward

Lindsay, S., Woodbridge, D.M., & Woodbridge, D.M. (2014). Spacecraft state-of-health (SOH) analysis via data mining [Conference]. 13th International Conference on Space Operations, SpaceOps 2014. https://doi.org/10.2514/6.2014-1733

Barrett, R.F., Vaughan, C.T., Hammond, S., & Hammond, S. (2013). Reducing the bulk of the bulk synchronous parallel model. Parallel Processing Letters, 23(04). https://doi.org/10.1142/S0129626413400100

Moreland, K. (2013). SDAV Progress Reports - 2013 [Presentation]. https://www.osti.gov/biblio/1675154

Moreland, K. (2013). SDAV Progress Reports - 2012 [Presentation]. https://www.osti.gov/biblio/1675155

Robbins, J., Dingreville, R.P.M., Voth, T.E., Furnish, M.D., & Furnish, M.D. (2013). LDRD final report : mesoscale modeling of dynamic loading of heterogeneous materials. https://doi.org/10.2172/1121927

Stewart, J. (2013). 2013 Dakota releases provide users an array of new features [Presentation]. https://www.osti.gov/biblio/1675176

Love, E., Robinson, A.C., Ridzal, D., & Ridzal, D. (2013). Edge remap for solids. https://doi.org/10.2172/1200671

Mitchell, J.A., Silling, S.A., & Silling, S.A. (2013). Towards Addressing Surface Effects in Ordinary Isotropic Peridynamic Models Position Aware Linear Solid (PALS) [Conference]. https://www.osti.gov/biblio/1121945

Parks, M.L. (2013). Quadrature Methods for Peridynamics [Presentation]. https://www.osti.gov/biblio/1675250

Blume-Kohout, R.J. (2013). "Implications of Analog Simulation for Computation and Complexity" [Conference]. https://www.osti.gov/biblio/1122366

Young, C.J., Heck, S., Eckert, R., & Eckert, R. (2013). Multi-Station Broad Regional Event Detection using Waveform Correlation [Conference]. https://www.osti.gov/biblio/1122380

Mickel, P.R., Aimone, J.B., Marinella, M., & Marinella, M. (2013). Memristors as Synapses in Artificial Neural Networks: Biomimicry Beyond Weight Change [Presentation]. https://doi.org/10.1007/978-3-319-10374-7_9

Sargsyan, K., Najm, H.N., Chowdhary, K., Debusschere, B.J., Swiler, L.P., Eldred, M., & Eldred, M. (2013). Uncertainty Quantification Methods for Model Calibration Validation and Risk Analysis [Conference]. https://doi.org/10.2514/6.2014-1497

Hjalmarson, H.P., Kensek, R.P., Magyar, R.J., Bondi, R.J., & Bondi, R.J. (2013). Low Energy Radiation Transport Applied to Secondary Electron Emission. Transport Theory and Statistical Physics. https://www.osti.gov/biblio/1122608

Ferreira, K.B. (2013). HPC Event Log Analysis: Method feasibility for event correlation and prediction [Conference]. https://www.osti.gov/biblio/1122625

Lofstead, G.F. (2013). Science Application Big Data Analytics and the Relations to Other Big Data Applications [Presentation]. https://www.osti.gov/biblio/1677540

Crossno, P.J., Shead, T.M., Hunt, W.L., Hsieh, M.N., & Hsieh, M.N. (2013). Ensemble Analysis of Electrical Circuit Simulations [Presentation]. https://doi.org/10.1007/978-3-662-44900-4_16

Jayaraj, J. (2013). CFD Builder: A Library Builder for Computational Fluid Dynamics [Presentation]. https://doi.org/10.1109/IPDPSW.2014.117

Pedretti, K. (2013). Kitten Lightweight Kernel Overview [Presentation]. https://www.osti.gov/biblio/1677583

Nielsen, E., Gao, X., Tezaur, I.K., Muller, R.P., Salinger, A.G., Young, R.W., & Young, R.W. (2013). QCAD simulation and optimization of semiconductor double quantum dots. https://doi.org/10.2172/1204068

Jakeman, J.D. (2013). Polynomial Chaos Methods in Dakota [Conference]. https://www.osti.gov/biblio/1123391

Leung, V.J. (2013). Simulation and Optimization of HPC Job Allocation for Reducing Communication and Cooling Costs. Sustainable Computing. https://www.osti.gov/biblio/1123560

Baczewski, A.D. (2013). Polaronic Relaxation by Three-Electron Bond Formation in Graphitic Carbon Nitrides. Journal of Physical Chemistry C. https://www.osti.gov/biblio/1123544

Bond, S.D., Lehoucq, R.B., & Lehoucq, R.B. (2013). A Galerkin Radial Basis Function Method for Nonlocal Diffusion [Presentation]. https://doi.org/10.1007/978-3-319-06898-5_1

Ward, H.L. (2013). Milestone 4746 Documentation - Sirroco File System Performance [Presentation]. https://www.osti.gov/biblio/1681133

Laros, J.H., Kelly, S.M., & Kelly, S.M. (2013). Power/energy use cases for high performance computing. https://doi.org/10.2172/1121915

Ridzal, D., Kouri, D.P., van Bloemen Waanders, B.G., & van Bloemen Waanders, B.G. (2013). Inexact Objective Function Evaluations in a Trust-Region Algorithm for PDE-Constrained Optimization under Uncertainty. SIAM Journal on Scientific Computing. https://www.osti.gov/biblio/1126754

Davis, W.L., Dixon, K.R., Martin, N., Wendt, J.D., & Wendt, J.D. (2013). Incremental learning for automated knowledge capture. https://doi.org/10.2172/1121921

Abbott, R.G. (2013). The relational blackboard [Conference]. 22nd Annual Conference on Behavior Representation in Modeling and Simulation, BRiMS 2013 - Co-located with the International Conference on Cognitive Modeling. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84887486132&origin=inward

Blume-Kohout, R.J. (2013). Screaming Quantum Algorithms [Presentation]. https://www.osti.gov/biblio/1673845

Parekh, O., Aidun, J.B., Dubicka, I., Landahl, A.J., Shulenburger, L., Tigges, C.P., Wendt, J.D., & Wendt, J.D. (2013). Evaluating Near-Term Adiabatic Quantum Computing. https://doi.org/10.2172/1465512

Baczewski, A.D., Yarrington, C.D., Bond, S.D., Erikson, W.W., Lehoucq, R.B., Mondy, L.A., Noble, D.R., Pierce, F., Roberts, C., van Swol, F.B., & van Swol, F.B. (2013). Computational Mechanics for Heterogeneous Materials. https://doi.org/10.2172/1325910

Parks, M.L., Littlewood, D.J., Silling, S.A., Turner, D.Z., & Turner, D.Z. (2013). Peridigm: A New Paradigm in Computational Peridynamics [Presentation]. https://www.osti.gov/biblio/1673906

Lin, P.T., Rajamanickam, S., Siefert, C., Bettencourt, M.T., Cyr, E.C., Domino, S.P., Fisher, T.C., Hoemmen, M.F., Hu, J.J., Phipps, E.T., Prokopenko, A., & Prokopenko, A. (2013). Enabling extreme-scale simulations with next-generation Trilinos for Sierra low Mach fluid application code [Conference]. https://www.osti.gov/biblio/1121283

Bond, S.D. (2013). Numerical methods for the Extended Variable Generalized Langevin Equation [Conference]. https://www.osti.gov/biblio/1121372

Gao, X., Mamaluy, D., Nielsen, E., Young, R.W., Muller, R.P., Bishop, N.C., Lilly, M.P., Carroll, M.S., & Carroll, M.S. (2013). Efficient self-consistent quantum transport simulator for quantum devices. Journal of Applied Physics. https://www.osti.gov/biblio/1121374

Peterson, K., Bochev, P., & Bochev, P. (2013). Efficient Parallel Algorithms for Climate Data Analysis [Conference]. https://www.osti.gov/biblio/1121648

Kramer, R.M.J., Bochev, P., Siefert, C., Voth, T.E., & Voth, T.E. (2013). An extended finite element method with algebraic constraints (XFEM-AC) for problems with weak discontinuities. Computer Methods in Applied Mechanics and Engineering, 266, pp. 70-80. https://doi.org/10.1016/j.cma.2013.07.013

Aimone, J.B. (2013). Neurogenesis inspired computing [Conference]. https://www.osti.gov/biblio/1117399

Kelly, S.M., Laros, J.H., & Laros, J.H. (2013). A Use Case Approach to Deriving Power API Requirements [Presentation]. https://www.osti.gov/biblio/1673672

Eldred, M., Jakeman, J.D., Wildey, T., & Wildey, T. (2013). Deployment of Scalable UQ Methods for High-Fidelity Simulation-based Applications within the DOE [Presentation]. https://www.osti.gov/biblio/1673675

Moreland, K. (2013). The ParaView Tutorial (Version 4.1) [Presentation]. https://www.osti.gov/biblio/1673690

Pedretti, K. (2013). Kitten Lightweight Kernel Overview [Presentation]. https://www.osti.gov/biblio/1673692

Mattsson, T., Cochrane, K.R., Root, S., Carpenter, J.H., & Carpenter, J.H. (2013). Molecular systems under shock compression into the dense plasma regime: carbon dioxide and hydrocarbon polymers [Conference]. https://www.osti.gov/biblio/1118163

Laros, J.H., Pedretti, K., & Pedretti, K. (2013). Qualification for PowerInsight accuracy of power measurements. https://doi.org/10.2172/1121972

Boman, E.G. (2013). A Nested Dissection Partitioning Method for Parallel Sparse Matrix-Vector Multiplication [Conference]. https://doi.org/10.1109/HPEC.2013.6670333

Moreland, K. (2013). A Classification of Scientific Visualization Algorithms for Massive Threading (slides) [Presentation]. https://www.osti.gov/biblio/1673701

Levy, S.L.N., Ferreira, K.B., & Ferreira, K.B. (2013). Predicting the Impact of Failure Avoidance on Checkpoint/Restart in Extreme-Scale Systems [Conference]. https://www.osti.gov/biblio/1118703

Heroux, M.A. (2013). Toward the Next Generation of Parallel and Resilient Algorithms [Conference]. https://www.osti.gov/biblio/1118736

Heroux, M.A. (2013). Scalable Manycore Computing for Sparse Computation [Conference]. https://www.osti.gov/biblio/1118721

Devine, K., Boman, E.G., Rajamanickam, S., & Rajamanickam, S. (2013). Using 2D Matrix Distributions in Trilinos [Conference]. https://www.osti.gov/biblio/1120216

Brost, R., Chow, J.G., Rintoul, M.D., McNamara, L.A., Stracuzzi, D.J., Wilson, A.T., Moya, M., & Moya, M. (2013). Harnessing the Full Potential of Geospatial Data [Presentation]. https://www.osti.gov/biblio/1673719

Gamble, J.K. (2013). Robust self-consistent closed-form quantum tomography [Presentation]. https://www.osti.gov/biblio/1673720

Littlewood, D.J., Silling, S.A., & Silling, S.A. (2013). Variable Nonlocal Length Scale in a Peridynamic Body with Applications to Local-Nonlocal Coupling [Conference]. https://www.osti.gov/biblio/1106272