Publications

Heroux, M.A. (2021). HPC Software Platform Trends:The Evolution of Trilinos from 2001 to 2026 [Presentation]. https://www.osti.gov/biblio/1900327

Willenbring, J.M., Heroux, M.A., Bernholdt, D., & Bernholdt, D. (2020). Agile Methodologies Redux [Presentation]. https://www.osti.gov/biblio/1812449

Willenbring, J.M., Heroux, M.A., Bernholdt, D., & Bernholdt, D. (2020). Agile Methodologies [Presentation]. https://www.osti.gov/biblio/1812857

Rajamanickam, S., Heroux, M.A., & Heroux, M.A. (2020). Exascale Node-Level Parallel Programming Environments: Overview and Deciding What's Right for You [Conference Poster]. https://www.osti.gov/biblio/1766696

Milewicz, R.M., Heroux, M.A., Gonsiorowski, E., Gupta, R., Moulton, J.D., Watson, G.R., Willenbring, J.M., Zamora, R.J., Raybourn, E.M., & Raybourn, E.M. (2020). Lightweight Software Process Improvement Using Productivity and Sustainability Improvement Planning (PSIP) [Conference Poster]. Communications in Computer and Information Science. 10.1007/978-3-030-44728-1_6

Heroux, M.A. (2019). SOFTWARE ENGINEERING BEST PRACTICES: Why What and How [Conference Poster]. https://www.osti.gov/biblio/1641822

Heroux, M.A. (2019). Trust me. QED. SIAM News. https://www.osti.gov/biblio/1544811

Heroux, M.A. (2019). Trilinos Overview [Conference Poster]. https://www.osti.gov/biblio/1640618

Heroux, M.A. (2019). The Extreme-Scale Scientific Software Stack (E4S) [Conference Poster]. https://www.osti.gov/biblio/1640619

Heroux, M.A. (2019). Making Reproducibility Indispensable [Conference Poster]. https://www.osti.gov/biblio/1639208

Heroux, M.A. (2019). Recent Trends and Challenges for High Performance Sparse Linear Algebra [Conference Poster]. https://www.osti.gov/biblio/1602105

Willenbring, J.M., Heroux, M.A., McInnes, L., & McInnes, L. (2018). ECP Software Technologies Software Development Kits (SDKs) [Conference Poster]. https://www.osti.gov/biblio/1639179

Heroux, M.A., Barba, L.A., Parashar, M., Stodden, V., Taufer, M., & Taufer, M. (2018). Toward a Compatible Reproducibility Taxonomy for Computational and Computing Sciences. 10.2172/1481626

Heroux, M.A. (2018). Better Scientific Software Tutorial [Conference Poster]. https://www.osti.gov/biblio/1525945

Heroux, M.A. (2018). Accelerated Sparse Linear Algebra: Some Lessons Challenges and Opportunities [Conference Poster]. https://www.osti.gov/biblio/1525946

Heroux, M.A. (2018). ECP Software Technology Overview [Conference Poster]. https://www.osti.gov/biblio/1525947

Heroux, M.A. (2018). Reproducibility in Scientific Software [Conference Poster]. https://www.osti.gov/biblio/1525948

Heroux, M.A. (2018). Parallel Programming Futures: What We Have and Will Have Will Not Be Enough [Conference Poster]. https://www.osti.gov/biblio/1806943

Moulton, D., Raybourn, E.M., McInnes, L., Heroux, M.A., & Heroux, M.A. (2018). Enhancing Productivity and Innovation in ECP with a Team of Teams Approach [Conference Poster]. https://www.osti.gov/biblio/1508895

Heroux, M.A. (2017). Numerical Linear Algebra Tutorial [Conference Poster]. https://www.osti.gov/biblio/1482490

Heroux, M.A. (2017). Better Scientific Software [Conference Poster]. https://www.osti.gov/biblio/1482489

Heroux, M.A. (2017). Research Methods [Conference Poster]. https://www.osti.gov/biblio/1482488

Gamell, M., Teranishi, K., Kolla, H., Mayo, J.R., Heroux, M.A., Chen, J.H., Parashar, M., & Parashar, M. (2017). Scalable Failure Masking for Stencil Computations using Ghost Region Expansion and Cell to Rank Remapping. SIAM Journal on Scientific Computing, 39(5). 10.1137/16m1081610

Gamell, M., Teranishi, K., Mayo, J.R., Kolla, H., Heroux, M.A., Chen, J.H., Parashar, M., & Parashar, M. (2017). Modeling and simulating multiple failure masking enabled by local recovery for stencil-based applications at extreme scales. IEEE Transactions on Parallel and Distributed Systems, 28(10), pp. 2881-2895. 10.1109/tpds.2017.2696538

Klinvex, A.M., Teranishi, K., Curfman McInnes, L., Heroux, M.A., & Heroux, M.A. (2017). Numerical Libraries: Community Achievements Challenges and Opportunities [Presentation]. https://www.osti.gov/biblio/1462631

Heroux, M.A., Bartlett, R., Demeshko, I., Gamblin, T., Johnson, J., Klinvex, A.M., Li, X., McInnes, L.C., Moulton, J.D., Osni-Kuffuor, D., Sarich, J., Smith, B., Willenbring, J.M., Yang, U.M., Hammond, G.E., & Hammond, G.E. (2017). xSDK Foundations: Toward an Extreme-scale Scientific Software Development Kit. Supercomputing frontiers and innovations, 4(1). 10.14529/jsfi170104

Teranishi, K., van der Wijngaart, R., Gamell, M., Valenzuela, E., Heroux, M.A., & Heroux, M.A. (2017). Fenix A Portable Flexible Fault Tolerance Programming Framework for MPI Applications [Conference Poster]. https://www.osti.gov/biblio/1427090

Heroux, M.A. (2017). Productive & Sustainable: More Effective CSE [Conference Poster]. https://www.osti.gov/biblio/1427433

Willenbring, J.M., Heroux, M.A., & Heroux, M.A. (2017). 15 Years of Trilinos: What Has Worked and Not [Conference Poster]. https://www.osti.gov/biblio/1424861

van der Wijngaart, R., Gamell, M., Teranishi, K., Valenzuela, E., Heroux, M.A., Parashar, M., & Parashar, M. (2016). Fenix A Portable Flexible Fault Tolerance Programming Framework for MPI Applications [Conference Poster]. https://www.osti.gov/biblio/1409884

van der Wijngaart, R., Gamell, M., Teranishi, K., Valenzuela, E., Heroux, M.A., Parashaar, M., & Parashaar, M. (2016). Fenix A Portable Flexible Fault Tolerance Programming Framework for MPI Applications [Conference Poster]. https://www.osti.gov/biblio/1406166

Gamell, M., Katz, D.S., Teranishi, K., Heroux, M.A., van der Wijngaart, R.F., Mattson, T.G., Parashar, M., & Parashar, M. (2016). Evaluating Online Global Recovery with Fenix Using Application-Aware In-Memory Checkpointing Techniques [Conference Poster]. Proceedings of the International Conference on Parallel Processing Workshops. 10.1109/ICPPW.2016.56

Heroux, M.A. (2016). Numerical Linear Algebra Tutorial [Presentation]. https://www.osti.gov/biblio/1514578

Heroux, M.A. (2016). It's About Software Now [Conference Poster]. https://www.osti.gov/biblio/1420851

Teranishi, K., Gamell, M., van der Vijngarrt, R., Heroux, M.A., Parashar, M., & Parashar, M. (2016). Fenix/LFLR: Scalable Online Failure Recovery Library for MPI Application [Presentation]. https://www.osti.gov/biblio/1514427

Leland, R.W., Rajan, M., Heroux, M.A., & Heroux, M.A. (2016). Performance Efficiency and Effectivness of Supercomputers. 10.2172/1561471

Teranishi, K., Gamell, M., van der Wijngaart, R., Parashar, M., Heroux, M.A., & Heroux, M.A. (2016). Fenix: An Online Failure Recovery Library for MPI applications [Presentation]. https://www.osti.gov/biblio/1346325

Teranishi, K., Gmaell, M., van der Wijngarrt, R., Parashar, M., Heroux, M.A., & Heroux, M.A. (2016). Fenix/LFLR: Scalable Online Failure Recovery Library for MPI Applications [Presentation]. https://www.osti.gov/biblio/1514419

Heroux, M.A., Dongarra, J., Luszczek, P., & Luszczek, P. (2016). High-performance conjugate-gradient benchmark: A new metric for ranking high-performance computing systems. International Journal of High Performance Computing Applications, 30(1), pp. 3-10. https://doi.org/10.1177/1094342015593158

Heroux, M.A. (2016). Sustainable & productive: Improving incentives for quality software [Conference Poster]. CEUR Workshop Proceedings. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84991113236&origin=inward

Heroux, M.A. (2015). Strategies for Next Generation HPC Applications and Systems [Presentation]. https://www.osti.gov/biblio/1514282

Rajamanickam, S., Yamazaki, I., Boman, E.G., Prokopenko, A., Heroux, M.A., Dongarra, J., & Dongarra, J. (2015). Preconditioning Communication-Avoiding Krylov Methods [Conference Poster]. https://www.osti.gov/biblio/1338145

Gamell, M., Teranishi, K., Heroux, M.A., Mayo, J.R., Kolla, H., Chen, J.H., Parashar, M., & Parashar, M. (2015). Local recovery and failure masking for stencil-based applications at extreme scales [Conference Poster]. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1145/2807591.2807672

Teranishi, K., Heroux, M.A., & Heroux, M.A. (2015). LFLR for MPI+X [Presentation]. https://www.osti.gov/biblio/1331765

Demeshko, I., Heroux, M.A., Salinger, A.G., & Salinger, A.G. (2015). Addressing sustainability and performance portability challenges in Albany [Conference Poster]. https://www.osti.gov/biblio/1334071

Rajamanickam, S., Yamazaki, I., Boman, E.G., Hoemmen, M.F., Heroux, M.A., Tomov, S., Dongarra, J., & Dongarra, J. (2015). Preconditioning Communication-Avoiding Krylov Methods [Conference Poster]. https://www.osti.gov/biblio/1530668

Gamell Balmana, M., Teranishi, K., Heroux, M.A., Mayo, J.R., Kolla, H., Chen, J.H., Parashar, M., & Parashar, M. (2015). Local Recovery and Failure Masking for Stencil-based Applications at Extreme Scales [Conference Poster]. https://www.osti.gov/biblio/1291974

Lin, P.T., Heroux, M.A., Williams, A.B., Barrett, R.F., & Barrett, R.F. (2015). Assessing a mini-application as a performance proxy for a finite element method engineering application. Concurrency and Computation. Practice and Experience, 27(17), pp. 5374-5389. https://doi.org/10.1002/cpe.3587

Gamell Balmana, M., Teranishi, K., Heroux, M.A., Mayo, J.R., Kolla, H., Chen, J.H., Parashar, M., & Parashar, M. (2015). Exploring failure recovery for stencil-based applications at extreme scales [Conference Poster]. HPDC 2015 - Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84987732402&origin=inward

Heroux, M.A. (2015). ACM TOMS replicated computational results initiative. ACM Transactions on Mathematical Software, 41(3). 10.1145/2743015

Demeshko, I., Salinger, A.G., Heroux, M.A., & Heroux, M.A. (2015). Addressing sustainability and performance portability challenges in Albany [Conference Poster]. https://www.osti.gov/biblio/1261055

Gamell, M., Teranishi, K., Heroux, M.A., Mayo, J.R., Kolla, H., Chen, J.H., Parashar, M., & Parashar, M. (2015). Exploring Failure Recovery for Stencil-based Applications at Extreme Scales [Conference Poster]. https://www.osti.gov/biblio/1246303

Teranishi, K., Heroux, M.A., Hoemmen, M.F., Chien, A., Balaji, P., Beckman, P., Dun, N., Fang, A., Fujita, H., Iskra, K., Rubenstein, Z., Zheng, Z., Schreiber, R., Hammond, J., Dinan, J., Laguna, I., Richards, D., Dubey, A., van Straalen, B., Siegel, A., & Siegel, A. (2015). Versioned Distributed Arrays for Resilience in Scientific Applications: Global View Resilience [Conference Poster]. https://www.osti.gov/biblio/1246304

Demeshko, I., Edwards, H.C., Heroux, M.A., Salinger, A.G., Pawlowski, R., Phipps, E.T., & Phipps, E.T. (2015). Towards Exascale Implementation of the Finite Element Based Application Development Environment [Conference Poster]. https://www.osti.gov/biblio/1241488

Rajamanickam, S., Yamazaki, I., Boman, E.G., Hoemmen, M.F., Heroux, M.A., Tomov, S., Dongarra, J., & Dongarra, J. (2015). Preconditioning Communication-Avoiding Krylov Methods [Conference Poster]. https://www.osti.gov/biblio/1883548

Demeshko, I., Bradley, A.M., Cyr, E.C., Edwards, H.C., Heroux, M.A., Phipps, E.T., Salinger, A.G., & Salinger, A.G. (2015). A Kokkos Implementation of Albany: A Performance Portable Multiphysics Simulation Code [Conference Poster]. https://www.osti.gov/biblio/1331664

Heroux, M.A., Manish, P., Gamell, M., & Gamell, M. (2015). Local Failure Local Recovery for large scale SPMD applications [Presentation]. https://www.osti.gov/biblio/1513989

Barrett, R.F., Crozier, P., Doerfler, D.W., Heroux, M.A., Lin, P.T., Thornquist, H.K., Trucano, T.G., Vaughan, C.T., & Vaughan, C.T. (2015). Assessing the role of mini-applications in predicting key performance characteristics of scientific and engineering applications. Journal of Parallel and Distributed Computing, 75, pp. 107-122. https://doi.org/10.1016/j.jpdc.2014.09.006

Gamell, M., Teranishi, K., Heroux, M.A., Mayo, J.R., Kolla, H., Chen, J.H., Parashar, M., & Parashar, M. (2014). Failure Masking and Local Recovery for Stencil-based Applications at Extreme Scales [Conference Poster]. https://www.osti.gov/biblio/1244932

Heroux, M.A. (2014). Mantevo 3.0 Overview [Presentation]. https://www.osti.gov/biblio/1513939

Heroux, M.A. (2014). Toward the Next Generation of Portable Scalable HPC Applications [Conference Poster]. https://www.osti.gov/biblio/1505047

Demeshko, I., Edwards, H.C., Heroux, M.A., Phipps, E.T., Salinger, A.G., Pawlowski, R., & Pawlowski, R. (2014). Kokkos implementation of Albany: a performance-portable finite element application [Conference Poster]. https://www.osti.gov/biblio/1315262

Demeshko, I., Edwards, H.C., Heroux, M.A., Pawlowski, R., Phipps, E.T., Salinger, A.G., Trott, C.R., & Trott, C.R. (2014). Towards Architecture Aware Performance Portable Finite Element Code [Conference Poster]. https://www.osti.gov/biblio/1319761

Teranishi, K., Heroux, M.A., & Heroux, M.A. (2014). Toward local failure local recovery resilience model using MPI-ULFM [Conference Poster]. ACM International Conference Proceeding Series. 10.1145/2642769.2642774

Heroux, M.A. (2014). Toward Local Failure Local Recovery (LFLR) Resilience Model Using MPI-ULFM [Presentation]. https://www.osti.gov/biblio/1502623

Teranishi, K., Heroux, M.A., Gamell Balmana, M., Parashar, M., & Parashar, M. (2014). Local Recovery of PDE Solvers from Hard Failures [Presentation]. https://www.osti.gov/biblio/1502624

Teranishi, K., Heroux, M.A., & Heroux, M.A. (2014). Toward Local Failure Local Recovery (LFLR) Resilience Model Using MPI-ULFM [Presentation]. https://www.osti.gov/biblio/1241722

Teranishi, K., Gamell Balmana, M., Heroux, M.A., Parashar, M.R., & Parashar, M.R. (2014). Local Recovery of PDE Solvers from Hard Failures [Conference Poster]. https://www.osti.gov/biblio/1315325

Demeshko, I., Edwards, H.C., Heroux, M.A., Phipps, E.T., Salinger, A.G., & Salinger, A.G. (2014). A performance-portable implementation of the Albany ice sheet model: Kokkos approach [Presentation]. https://www.osti.gov/biblio/1496705

Heroux, M.A., Teranishi, K., & Teranishi, K. (2014). Report for the ASC CSSE L2 Milestone (4873) - Demonstration of Local Failure Local Recovery Resilient Programming Model. 10.2172/1149352

Boman, E.G., Heroux, M.A., Hoemmen, M.F., Rajamanickam, S., & Rajamanickam, S. (2014). Domain Decomposition Preconditioners for Communication-Avoiding Krylov Methods on Distributed GPUs [Conference]. https://www.osti.gov/biblio/1142949

Yamazaki, I., Rajamanickam, S., Boman, E.G., Hoemmen, M.F., Heroux, M.A., Tomov, S., & Tomov, S. (2014). Domain Decomposition Preconditioners for Communication-Avoiding Krylov Methods on a Hybrid CPU/GPU Cluster [Conference]. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84936944369&origin=inward

Heroux, M.A. (2013). System Software: A Necessary but Ill-prepared Hero [Conference]. https://www.osti.gov/biblio/1140697

Heroux, M.A. (2013). Toward the Next Generation of Parallel and Resilient Algorithms [Conference]. https://www.osti.gov/biblio/1118736

Heroux, M.A. (2013). Scalable Manycore Computing for Sparse Computation [Conference]. https://www.osti.gov/biblio/1118721

Heroux, M.A. (2013). HPCG Benchmark Technical Specification. 10.2172/1113870

Heroux, M.A. (2013). Building the Next Generation of Parallel and Resilient Applications and Libraries [Conference]. https://www.osti.gov/biblio/1116596

Barrett, R.F., Heroux, M.A., & Heroux, M.A. (2013). The Mantevo ProjectMini-applications: Vehicles for Co-Design [Presentation]. https://www.osti.gov/biblio/1666329

Hemstad, J., Heroux, M.A., Hoekstra, R.J., & Hoekstra, R.J. (2013). Co-Design Through Mini-Apps: Advising The Future of Hardware & Software [Presentation]. https://www.osti.gov/biblio/1666024

Hemstad, J., Heroux, M.A., Hoekstra, R.J., & Hoekstra, R.J. (2013). Co-Design in Action: HPCCG and the Intel Phi [Presentation]. https://www.osti.gov/biblio/1666025

Heroux, M.A. (2013). Toward a New Metric for Ranking High Performance Computing Systems. 10.2172/1089988

Willenbring, J.M., Heroux, M.A., & Heroux, M.A. (2013). Trilinos Developers SQE Guide: ASC Software Quality Engineering Practices Version 3.0. 10.2172/1097202

Heroux, M.A. (2013). Toward Effective Parallel Programming: What We Need and Don't Need [Conference]. https://www.osti.gov/biblio/1079537

Heroux, M.A. (2013). Toward Resilient Algorithms and Applications [Conference]. 10.1145/2465813.2465814

Hoemmen, M.F., Heroux, M.A., & Heroux, M.A. (2013). Next-generation programming models: What we need and do not need [Conference]. https://www.osti.gov/biblio/1064255

Hammond, S., Rajamanickam, S., Ang, J.A., Barrett, R.F., Doerfler, D.W., Heroux, M.A., Laros, J.H., & Laros, J.H. (2013). Experiences with Xeon Phi [Conference]. https://www.osti.gov/biblio/1067550

Barrett, R.F., Hammond, S., Vaughan, C.T., Doerfler, D.W., Heroux, M.A., & Heroux, M.A. (2012). Navigating an evolutionary fast path to exascale [Conference]. Proceedings - 2012 SC Companion: High Performance Computing, Networking Storage and Analysis, SCC 2012. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84876572991&origin=inward

Barrett, R.F., Crozier, P., Doerfler, D.W., Hammond, S., Heroux, M.A., Lin, P.T., Trucano, T.G., Vaughan, C.T., Williams, A.B., & Williams, A.B. (2012). Assessing the predictive capabilities of mini-applications [Conference]. Proceedings - 2012 SC Companion: High Performance Computing, Networking Storage and Analysis, SCC 2012. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84876551353&origin=inward

Rajamanickam, S., Boman, E.G., Heroux, M.A., & Heroux, M.A. (2012). ShyLU: A hybrid-hybrid solver for multicore platforms [Conference]. Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium, IPDPS 2012. https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=84866879886&origin=inward

Hammond, S., Ang, J.A., Barrett, R.F., Doerfler, D.W., Heroux, M.A., Laros, J.H., & Laros, J.H. (2012). Early Experiences with Co-Design [Conference]. https://www.osti.gov/biblio/1062279

Rajamanickam, S., Boman, E.G., Heroux, M.A., Thornquist, H.K., & Thornquist, H.K. (2012). ShyLU: A Hybrid-Hybrid Solver [Conference]. https://www.osti.gov/biblio/1072647

Heroux, M.A. (2012). Building the Next Generation of Parallel Applications & Libraries [Presentation]. https://www.osti.gov/biblio/1647947

Heroux, M.A. (2012). Riding the new commodity curves for scientific computing. Proposed for publication in SIAM News.. https://www.osti.gov/biblio/1061109

Barrett, R.F., Dosanjh, S., Heroux, M.A., & Heroux, M.A. (2012). Toward Codesign in High Performance Computing Systems [Conference]. https://www.osti.gov/biblio/1061146

Lin, P.T., Heroux, M.A., Williams, A.B., Barrett, R.F., & Barrett, R.F. (2012). Miniapplications: a Promising Approach to Improve the Performance of Computational Mechanics Codes [Conference]. https://www.osti.gov/biblio/1140936

Spotz, W.F., Heroux, M.A., & Heroux, M.A. (2012). Introduction to Usability Capability Area [Conference]. https://www.osti.gov/biblio/1067682

Hammond, S., Ang, J.A., Barrett, R.F., Laros, J.H., Doerfler, D.W., Heroux, M.A., Trott, C.R., Crozier, P., & Crozier, P. (2012). Early Experiences with Heterogeneous Compute [Conference]. https://www.osti.gov/biblio/1064134

Barrett, R.F., Hammond, S., Vaughan, C.T., Doerfler, D.W., Heroux, M.A., & Heroux, M.A. (2012). Navigating An Evolutionary Fast Path to Exascale. https://www.osti.gov/biblio/1067805

Hoemmen, M.F., Ferreira, K.B., Heroux, M.A., Brightwell, R.B., & Brightwell, R.B. (2012). Cooperative application/OS DRAM fault recovery. 10.2172/1044954

Rajamanickam, S., Boman, E.G., Heroux, M.A., & Heroux, M.A. (2012). ShyLU: A Hybrid-hybrid Solver for Multicore Platforms [Conference]. https://www.osti.gov/biblio/1073487