dfi.h File Reference

#include "Array1D.h"
#include "Array2D.h"
#include "Array3D.h"
#include "mcmc.h"
#include "amcmc.h"
#include "quad.h"
#include "math.h"
#include "arrayio.h"
#include "dsfmt_add.h"
#include <sys/time.h>
#include "arraytools.h"
#include <string>
#include <iostream>
#include <iomanip>
#include "sampling.hpp"
#include "tools.h"
#include "PCSet.h"
#include <stdlib.h>
#include <sstream>

Go to the source code of this file.

Classes
class	DFIsurr
class	dataPosteriorInformation
class	parameterPosteriorInformation
class	DFI

Macros
#define	__wsu

Functions
void	userRunModel (Array1D< double > &modelDataY, Array1D< double > &modelDataX, Array1D< double > &parameters, Array1D< double > &hyperparameters)
double	userComputeParamLogPosterior (parameterPosteriorInformation *paramPostInfo, Array1D< double > parameters)
double	userComputeParamLogLikelihood (parameterPosteriorInformation *paramPostInfo, Array1D< double > modelDataOut, Array1D< double > parameters, Array1D< double > hyperparameters)
void	userComputeStatistics (Array1D< double > &parameterStatistics, Array1D< MCMC::chainstate > &parameterChain)
void	userDefineData (dataPosteriorInformation &dataPostInfo)
void	userDefineConstraints (dataPosteriorInformation &dataPostInfo)
void	userSpecifyNominalParams (dataPosteriorInformation &dataPostInfo)
double	dataInferenceLogPosterior (Array1D< double > &m, void *info)
double	parameterInferenceLogPosterior (Array1D< double > &beta, void *info)
void	parameterInference (dataPosteriorInformation *dataPostInfo, Array1D< double > &m, Array1D< MCMC::chainstate > &parameterChainEntries)
double	computeParamLogPosterior (parameterPosteriorInformation *paramPostInfo, Array1D< double > parameters)
double	computeParamLogLikelihood (parameterPosteriorInformation *paramPostInfo, Array1D< double > modelDataOut, Array1D< double > parameters, Array1D< double > hyperparameters)
void	computeStatistics (Array1D< double > &parameterStatistics, Array1D< MCMC::chainstate > &parameterChain)

Macro Definition Documentation

__wsu

#define __wsu

Function Documentation

computeParamLogLikelihood()

double computeParamLogLikelihood	(	parameterPosteriorInformation *	paramPostInfo,
		Array1D< double >	modelDataOut,
		Array1D< double >	parameters,
		Array1D< double >	hyperparameters
	)

computeParamLogPosterior()

double computeParamLogPosterior	(	parameterPosteriorInformation *	paramPostInfo,
		Array1D< double >	parameters
	)

computeStatistics()

void computeStatistics	(	Array1D< double > &	parameterStatistics,
		Array1D< MCMC::chainstate > &	parameterChain
	)

dataInferenceLogPosterior()

double dataInferenceLogPosterior	(	Array1D< double > &	m,
		void *	info
	)

parameterInference()

void parameterInference	(	dataPosteriorInformation *	dataPostInfo,
		Array1D< double > &	m,
		Array1D< MCMC::chainstate > &	parameterChainEntries
	)

parameterInferenceLogPosterior()

double parameterInferenceLogPosterior	(	Array1D< double > &	beta,
		void *	info
	)

userComputeParamLogLikelihood()

double userComputeParamLogLikelihood	(	parameterPosteriorInformation *	paramPostInfo,
		Array1D< double >	modelDataOut,
		Array1D< double >	parameters,
		Array1D< double >	hyperparameters
	)

userComputeParamLogPosterior()

double userComputeParamLogPosterior	(	parameterPosteriorInformation *	paramPostInfo,
		Array1D< double >	parameters
	)

userComputeStatistics()

void userComputeStatistics	(	Array1D< double > &	parameterStatistics,
		Array1D< MCMC::chainstate > &	parameterChain
	)

userDefineConstraints()

void userDefineConstraints

(

dataPosteriorInformation &

dataPostInfo

)

userDefineData()

void userDefineData

(

dataPosteriorInformation &

dataPostInfo

)

userRunModel()

void userRunModel	(	Array1D< double > &	modelDataY,
		Array1D< double > &	modelDataX,
		Array1D< double > &	parameters,
		Array1D< double > &	hyperparameters
	)

userSpecifyNominalParams()

void userSpecifyNominalParams

(

dataPosteriorInformation &

dataPostInfo

)