Sandia Simple Particle Tracking (Sandia SPT) v 1.0

Download (Matlab Code)

Sandia SPT is intended to provide an easy to use single particle tracking implementation, including source code for all the required steps (spot detection, localization, and linking observations). This software was developed as part of a book chapter1 introducing the reader to techniques to fluorescently label individual proteins in living cells and extract their quantitative dynamics. As such, algorithms were selected for their ease of use and understandability, not necessarily to represent the state of the art. Please see the book chapter for more detailed information and instructions on how to use Sandia SPT.

  1. Anthony, S.M.; Carroll-Portillo, A.; Timlin, J.A., Dynamics and Interactions of Individual Proteins in the Membrane of Living Cells. In Anup K. Singh (Ed.) Single Cell Protein Analysis Methods in Molecular Biology. Springer 2015, 185-207

License Info

Copyright 2014 National Technology & Engineering Solutions of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with NTESS, the U.S. Government retains certain rights in this software.

Sandia SPT is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. Sandia SPT is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with Sandia SPT. If not, visit the GNU Operating System website.