Sandia National Laboratories
Michael L. Parks
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RESEARCH

Research Affiliations

I am an affiliated faculty member in the Department of Scientific Computing at Florida State University.

Research Interests

My current research interests include numerical analysis, numerical linear algebra, linear solvers, multiscale modeling, and domain decomposition methods. A description of some current and past projects appears below.


Mesoscopic Material Modeling

I am the Sandia Co-PI for the Collaboratory on Mathematics for Mesoscopic Modeling of Materials (CM4), led by George Karniadakis (PNNL / Brown University). The Sandia research team includes Pavel Bochev, Jonathan Hu, and Christopher Siefert. This project focuses on developing rigorous mathematical foundations for understanding and controlling fundamental mechanisms in mesoscale processes to enable scalable synthesis of complex materials, through the design of efficient modeling methods and corresponding scalable algorithms. This large multi-institution project is funded by the DOE Office of Advanced Scientific Computing Research (ASCR) as one of the Mathematical Multifaceted Integrated Capabilities Centers (MMICCs). Drs. Sandy Landsberg and Steven Lee are the program managers.


Peridynamics

The peridynamic theory of continuum mechanics is a nonlocal extension of classical mechanics which allows direct interactions between points separated by a finite distance. The maximum interaction distance between any two points defines a length scale, making peridynamics suitable for multiscale modeling. Peridynamics is based upon integral equations, and was developed to allow discontinuous media (e.g., fracture and fragmentation). Peridynamics was first proposed by Stewart Silling.

Computational Peridynamics
Computational peridynamics is a special variety of of computational mechanics, and is an active area of research and development. Known optimal methods and algorithms for classical (local) computational mechanics frequently do not map directly onto a nonlocal setting. I am interested in the development of algorithms and computational methods for nonlocal models.

A particular discretization of the peridynamic model has the same computational structure as classical molecular dynamics. I am the principal author of the peridynamic model implemented within Sandia's massively parallel molecular dynamics code, LAMMPS. This is the only open-source peridynamic code, and was developed jointly with Pablo Seleson and Steve Plimpton. Visit my software page for more information.

I develop for the Sandia Peridynamic code, Peridigm. Peridigm is a based upon an agile components methodology to enable massively parallel multiphysics peridynamic simulations. Peridigm provides for optimization, UQ, error estimation, and calibration through an interface to Sandia's DAKOTA project. This is joint work with Dave Littlewood, John Mitchell, and Stewart Silling.

Publications
Pablo Seleson and Michael L. Parks, On the Role of the Influence Function in the Peridynamic Theory, International Journal for Multiscale Computational Engineering, To appear, 2010.
Michael L. Parks, Pablo Seleson, Steven J. Plimpton, Richard B. Lehoucq, and Stewart A. Silling, Peridynamics with LAMMPS: A User Guide, Technical Report SAND2010-5549, Sandia National Laboratories, August 2010.
Michael L. Parks, Richard B. Lehoucq, Steven J. Plimpton, and Stewart A. Silling, Implementing Peridynamics within a Molecular Dynamics Code, Computer Physics Communications, 179(11), pp. 777-783, 2008.

Peridynamics as a Multiscale Model
Peridynamics is a nonlocal formulation of continuum mechanics. The maximum interaction distance between any two points defines a length scale, making peridynamics suitable for multiscale modeling. Much of my work has been in the development of peridynamics as a continualization of molecular dynamics.

Publications
Pablo Seleson, Michael L. Parks, Max Gunzburger, and Richard B. Lehoucq, Peridynamics as an Upscaling of Molecular Dynamics, Multiscale Modeling and Simulation, 8(1), pp. 204-227, 2009.


Linear Solvers

My research in iterative methods focuses primarily on the development of robust solvers and preconditioners for ill-conditioned linear systems.

Scalable Solvers for Fluid-DFTs
Fluid density functional theories (Fluid-DFTs) enable modeling and simulation of a wide range of applications, including fluids at interfaces, colloidal fluids, wetting, porous media, and biological mechanisms at the cellular level. Fluid-DFT problems result in a collection of highly nonlinear problems that usually require continuation algorithms around a fully-coupled Newton solver. As most of the computation time is spent in the linear solver, and because problem scalability is ultimately determined by the scalability of the linear solver, scalable preconditioned iterative solvers are a critical capability for Fluid-DFT problems and is the key to enabling realistic solutions for important problems.

I develop for Sandia's Tramonto Fluid-DFT code. My work is funded by ASCR, in collaboration with David Day, Amalie Frischknecht, Mike Heroux and Laurie Frink.

Krylov Subspace Recycling
Many problems in engineering and physics require the solution of a large sequence of linear systems. We can reduce the cost of solving subsequent systems in the sequence by recycling information from previous systems. I develop a family of solvers based upon a technique known as "Krylov Subspace Recycling". The Belos package in Trilinos currently contains a recycling GMRES solver (GCRODR) and a recycling CG solver (RCG). For some problems, the iteration count required to solve a linear system can be cut by a factor of two.

For Matlab and Trilinos implementations of recycling solvers, please see my software page.

Publications
Michael L. Parks, Eric de Sturler, Greg Mackey, Duane Johnson, and Spandan Maiti, Recycling Krylov Subspaces for Sequences of Linear Systems, SIAM Journal on Scientific Computing, 28(5), pp. 1651-1674, 2006.


Multiscale Modeling

Multiscale modeling refers to the use of models capturing information at multiple spatial and temporal scales. Such models are particularly important when, for example, microscale phenomena dictate macroscale response.

Peridynamics as a Multiscale Model
The maximum interaction distance between any two points in a peridynamic model induces a length scale, making peridynamics suitable for multiscale modeling. See above for more.

Atomistic-to-Continuum Coupling
The deformation and failure of many engineering materials are inherently multiscale processes. Models for such processes frequently call for decomposition of the material domain into atomistic and continuum subdomains, where the continuum subdomain is modeled via a finite element analysis. This coupling enables a continuum calculation to be performed over the majority of a domain while limiting the more expensive atomistic simulation to some small subset of the domain. The treatment of the interface between these subdomains is what distinguishes one atomistic-to-continuum coupling method from another. Along with Santiago Badia, Pavel Bochev, Jacob Fish, Max Gunzburger, Rich Lehoucq, and Mark Shephard, I developed an atomistic-to-continuumm coupling method called blending.

Recognizing atomistic-to-continuum coupling as heterogeneous domain decomposition, it makes sense to apply conventional domain decomposition methods to this problem. I developed a method for atomistic-to-continuum coupling based upon alternating Schwartz.

With Greg Wagner, Reese Jones, and Jeremy Templeton I also developed a methodology for atomistic-to-continuum thermal coupling. This was deployed in LAMMPS by Reese Jones, Jeremy Templeton, and Jon Zimmerman.

Publications
Pavel Bochev, Richard Lehoucq, Michael Parks, Santiago Badia, and Max Gunzburger, Blending methods for coupling atomistic and continuum models, in Multiscale Methods: Bridging the Scales in Science and Engineering, ed. by Jacob Fish, Oxford University Press, pp. 165-191, 2009.
Santiago Badia, Pavel B. Bochev, Max Gunzburger, Richard B. Lehoucq, Michael L. Parks, Bridging Methods for Coupling Atomistic and Continuum Models, in Large-Scale Scientific Computing 6th International Conference, Sozopol, Bulgaria, June 5-9, 2007, I. Lirkov, S. Margenov, and J. Wasniewski, eds., vol. 4818 of Lecture Notes in Computer Science, pp. 16-27, 2009.
Michael L. Parks, Pavel B. Bochev, and Richard B. Lehoucq, Connecting Atomistic-to-Continuum Coupling and Domain Decomposition, Multiscale Modeling and Simulation, 7, pp. 362-380, 2008.
Santiago Badia, Michael L. Parks, Pavel B. Bochev, Max Gunzburger, and Richard B. Lehoucq, On Atomistic-to-Continuum Coupling by Blending, Multiscale Modeling and Simulation, 7, pp. 381-406, 2008.
Santiago Badia, Pavel. B. Bochev, Jacob Fish, Max D. Gunzburger, Richard B. Lehoucq, Mohan. A. Nuggehally, Michael. L. Parks, A Force-Based Blending Model for Atomistic-to-Continuum Coupling, International Journal for Multiscale Computational Engineering, 5, pp. 387-406, 2007.
Jacob Fish, Mohan A. Nuggehally, Mark S. Shephard, Catalin R. Picu, Santiago Badia, Michael L. Parks, and Max Gunzburger, Concurrent AtC coupling based on a blend of the continuum stress and the atomistic force, Computer Methods in Applied Mechanics and Engineering, 196, pp. 4548-4560, 2007.
Gregory J. Wagner, Reese E. Jones, Jeremy A. Templeton, and Michael L. Parks, An Atomistic-to-Continuum Coupling Method for Heat Transfer in Solids, Computer Methods in Applied Mechanics and Engineering, 197, pp. 3351-3365, 2008.


Domain Decomposition

Domain decomposition is the method of splitting a mathematical and computational problem into coupled problems on smaller subdomains that partition the original domain. This is a necessary process to map a computational problem onto a parallel computer.

Mesh-Tying
In the case where two domains sharing a common curved interface are meshed independently, the domains will generally have an inconsistent description of that boundary. A minimal requirement for any proposed mechanism to tie these two meshes together is that the resulting finite element formulation pass a first-order patch test, whether or not the two discretizations of the shared boundary coincide. Along with Pavel Bochev and Louis Romero, I developed a novel computationally efficient Lagrange-multiplier method for tying together independently meshed subdomains with non-coincident contact boundaries in two dimensions.

Publications
Michael L. Parks, Louis A. Romero, and Pavel B. Bochev, A Novel Lagrange-Multiplier Based Method for Consistent Mesh Tying, Computer Methods in Applied Mechanics and Engineering, 196, pp. 3335-3347, 2007.

KKT Preconditioners for FETI Methods
Preconditioners for KKT (Karush-Kuhn-Tucker) linear systems have been studied extensively. The one-level finite element tearing and interconnecting (FETI) method produces a linear system of this form. In the fourth chapter of my Ph.D. dissertation, I show new connections between recently proposed KKT preconditioners and solvers and the one-level FETI method. These connections provide a new perspective on the analysis of FETI preconditioners by leveraging work for KKT systems. In particular, they provide a means of bounding the eigenvalues of preconditioned FETI systems, and thus the rate of convergence of an iterative solver. This theoretical framework gives a means to analyze the usefulness of improvements to FETI preconditioners.


Chromatography

Chromatography is a family of analytical chemistry techniques for the separation of mixtures. In gas chromatography, a chemical sample separates into its constituent components as it travels along a long thin column. In a traditional chromatograph, the column has a circular cross section. With the advent of MEMS technology, columns can be miniaturized to fit on a single chip. Unfortunately, these columns cannot be manufactured to have a circular cross-section. With Louis Romero, Joshua Whiting, and Joe Simonson, I analyzed the effects of non-circular cross-sectional geometry on column performance.

Publications
Michael L. Parks, Louis A. Romero, and Joshua Whiting, A Reduced Order Model for the Study of Asymmetries in Linear Gas Chromatography for Homogeneous Tubular Columns, Technical Report SAND2005-4868, Sandia National Laboratories, August 2005.
Michael L. Parks, Louis A. Romero, Taylor-Aris Dispersion in High Aspect Ratio Columns of Nearly Rectangular Cross-Section, Mathematical and Computer Modelling, 46, pp. 699-717, 2007.


Previous Research

As a masters student in the Department of Computer Science at Virginia Tech, my work was interdisciplinary between the physics and computer science departments.
Masters Thesis: An Efficient Numeric Computation of a Phase Diagram in the Biased Diffusion of Two Species (Advisor: Cal Ribbens) (2000)

As an undergraduate at Virginia Tech earning dual degrees in the departments of computer science and physics, I participated in undergraduate research in both departments.
Undergraduate Thesis: The Construction and Analysis of Factorial Experiments: Application to Tribochemical Vapor Deposition (1998)
Tribochemical Vapor Deposition - A New Deposition Technique: Poster at the 1997 Gordon Research Conference on Solid State Studies in Ceramics (with Jimmy Ritter) (1997)
Virginia Tech Physics Department: Tribochemical Vapor Deposition (TCVD) Experiment (1996-98) Virginia Tech Computer Science Department: Learning in Networked Communities Project on Collaborative Education (1996)

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Michael L. Parks


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